Wall clock time and date at job start Tue Mar 31 2020 06:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08990 * 109.47225 * 2 1 4 4 C 1.50707 * 109.47027 * 239.99708 * 2 1 3 5 5 O 1.21284 * 119.99908 * 240.00225 * 4 2 1 6 6 N 1.34768 * 119.99811 * 60.00460 * 4 2 1 7 7 C 1.40156 * 120.00143 * 179.97438 * 6 4 2 8 8 C 1.40411 * 125.97049 * 0.03124 * 7 6 4 9 9 C 1.35241 * 107.86611 * 179.75956 * 8 7 6 10 10 N 1.34965 * 107.86302 * 0.38043 * 9 8 7 11 11 C 1.46495 * 125.97869 * 179.87777 * 10 9 8 12 12 C 1.50702 * 109.47571 * 124.71943 * 11 10 9 13 13 H 1.08002 * 119.99446 * 359.97438 * 12 11 10 14 14 C 1.37871 * 120.00072 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99826 * 179.72119 * 14 12 11 16 16 Si 1.86800 * 120.00406 * 359.97438 * 14 12 11 17 17 H 1.48501 * 109.46758 * 269.72576 * 16 14 12 18 18 H 1.48499 * 109.47026 * 29.72423 * 16 14 12 19 19 H 1.48496 * 109.47474 * 149.72459 * 16 14 12 20 20 N 1.31221 * 125.97787 * 180.02562 * 7 6 4 21 21 N 1.46499 * 109.46701 * 119.99986 * 2 1 3 22 22 C 1.34435 * 126.82584 * 35.00172 * 21 2 1 23 23 N 1.30825 * 108.07749 * 179.97438 * 22 21 2 24 24 C 1.33243 * 109.83073 * 0.02562 * 23 22 21 25 25 N 1.30707 * 108.94573 * 359.75004 * 24 23 22 26 26 H 1.09002 * 109.47371 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47202 * 300.00557 * 1 2 3 28 28 H 1.09004 * 109.46559 * 60.00086 * 1 2 3 29 29 H 0.97004 * 120.00026 * 359.97438 * 6 4 2 30 30 H 1.07998 * 126.06914 * 0.02562 * 8 7 6 31 31 H 1.08000 * 126.06933 * 180.24554 * 9 8 7 32 32 H 1.09000 * 109.47378 * 4.71603 * 11 10 9 33 33 H 1.09001 * 109.47153 * 244.71723 * 11 10 9 34 34 H 0.96999 * 120.00128 * 180.27192 * 15 14 12 35 35 H 1.08000 * 125.95901 * 359.92496 * 22 21 2 36 36 H 1.07998 * 125.52626 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2305 5 8 2.7296 -1.6966 -1.1191 6 7 1.7068 -0.2500 -2.4545 7 6 2.1744 -0.9104 -3.5989 8 6 2.9849 -2.0569 -3.6163 9 6 3.2113 -2.3854 -4.9085 10 7 2.5779 -1.4797 -5.6830 11 6 2.5639 -1.4596 -7.1478 12 6 1.1384 -1.4590 -7.6367 13 1 0.3243 -1.4726 -6.9271 14 6 0.8736 -1.4421 -8.9896 15 7 -0.3704 -1.4471 -9.4163 16 14 2.2818 -1.4192 -10.2168 17 1 2.6441 -0.0132 -10.5282 18 1 3.4569 -2.1159 -9.6348 19 1 1.8638 -2.1104 -11.4629 20 7 1.9312 -0.5656 -4.8414 21 7 2.0183 -0.6906 1.1962 22 6 1.4557 -1.7519 1.7999 23 7 2.1936 -2.0700 2.8323 24 6 3.2308 -1.2381 2.9201 25 7 3.1698 -0.3786 1.9372 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3632 0.5139 -0.8901 29 1 1.1489 0.5385 -2.5435 30 1 3.3574 -2.5853 -2.7512 31 1 3.7970 -3.2226 -5.2585 32 1 3.0781 -2.3423 -7.5282 33 1 3.0704 -0.5625 -7.5037 34 1 -0.5567 -1.4392 -10.3682 35 1 0.5518 -2.2538 1.4876 36 1 3.9993 -1.2712 3.6781 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319660184.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:17 Heat of formation + Delta-G solvation = 129.057243 kcal Electronic energy + Delta-G solvation = -22019.304151 eV Core-core repulsion = 18542.382508 eV Total energy + Delta-G solvation = -3476.921643 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.123 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.15192 -42.29318 -40.78880 -36.40297 -36.17211 -35.21657 -33.18173 -32.35338 -31.19982 -30.83498 -29.02995 -26.44537 -24.82007 -23.75579 -22.90916 -22.45319 -21.66866 -20.93381 -19.12990 -18.90467 -18.19732 -17.97242 -16.99345 -16.84818 -16.40402 -16.24114 -15.84327 -15.60681 -15.16811 -15.02687 -14.83555 -14.46534 -13.94940 -13.92785 -13.74049 -13.38932 -13.30685 -12.99188 -12.68506 -12.51695 -12.22452 -11.84014 -11.73846 -11.55297 -11.36899 -11.05524 -10.88284 -10.79132 -10.61092 -9.84012 -9.19470 -8.38191 -6.48443 0.50301 0.78544 1.05063 1.30930 1.35471 1.38914 1.45098 1.50559 2.00610 2.10834 2.25053 2.28174 2.94622 3.21237 3.42511 3.47310 3.73951 3.87932 3.96075 4.16126 4.25339 4.56461 4.58316 4.64409 4.68598 4.83159 4.83743 5.03485 5.05764 5.22934 5.24556 5.45691 5.76838 5.80025 5.96663 6.10735 6.36457 6.57027 6.80563 6.98594 7.08047 7.14576 8.78579 Molecular weight = 290.12amu Principal moments of inertia in cm(-1) A = 0.041133 B = 0.002972 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.551345 B = 9419.458803 C = 9761.575819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.155 3.845 3 H 0.157 0.843 4 C 0.510 3.490 5 O -0.539 6.539 6 N -0.613 5.613 7 C 0.265 3.735 8 C -0.295 4.295 9 C 0.062 3.938 10 N -0.342 5.342 11 C 0.238 3.762 12 C -0.546 4.546 13 H 0.030 0.970 14 C 0.016 3.984 15 N -0.941 5.941 16 Si 0.953 3.047 17 H -0.265 1.265 18 H -0.231 1.231 19 H -0.279 1.279 20 N -0.339 5.339 21 N -0.370 5.370 22 C 0.272 3.728 23 N -0.573 5.573 24 C 0.196 3.804 25 N -0.346 5.346 26 H 0.080 0.920 27 H 0.105 0.895 28 H 0.112 0.888 29 H 0.429 0.571 30 H 0.162 0.838 31 H 0.208 0.792 32 H 0.082 0.918 33 H 0.045 0.955 34 H 0.272 0.728 35 H 0.246 0.754 36 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.365 2.995 19.648 20.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.048 3.952 3 H 0.174 0.826 4 C 0.296 3.704 5 O -0.413 6.413 6 N -0.263 5.263 7 C 0.011 3.989 8 C -0.326 4.326 9 C -0.087 4.087 10 N -0.124 5.124 11 C 0.119 3.881 12 C -0.584 4.584 13 H 0.048 0.952 14 C -0.183 4.183 15 N -0.580 5.580 16 Si 0.774 3.226 17 H -0.190 1.190 18 H -0.154 1.154 19 H -0.204 1.204 20 N -0.170 5.170 21 N -0.160 5.160 22 C -0.025 4.025 23 N -0.300 5.300 24 C -0.106 4.106 25 N -0.173 5.173 26 H 0.099 0.901 27 H 0.124 0.876 28 H 0.130 0.870 29 H 0.268 0.732 30 H 0.180 0.820 31 H 0.225 0.775 32 H 0.100 0.900 33 H 0.063 0.937 34 H 0.081 0.919 35 H 0.262 0.738 36 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 4.609 3.475 18.763 19.631 hybrid contribution 0.082 -0.272 -0.621 0.683 sum 4.691 3.203 18.142 19.011 Atomic orbital electron populations 1.22335 0.86538 1.05822 1.07225 1.21330 0.98631 0.97694 0.77557 0.82561 1.21394 0.79984 0.84717 0.84349 1.90703 1.37382 1.26969 1.86221 1.42387 1.51419 1.31043 1.01500 1.19405 0.97833 0.94728 0.86979 1.21688 1.11307 1.02132 0.97494 1.23214 0.98500 0.96287 0.90650 1.48533 1.36816 1.19997 1.07053 1.19921 0.97418 0.99689 0.71116 1.21216 0.91374 1.53028 0.92814 0.95211 1.25878 0.98958 0.93259 1.00190 1.70037 1.21292 1.50607 1.16021 0.85657 0.79352 0.79617 0.78003 1.19042 1.15368 1.20429 1.77319 1.22861 1.17933 0.98869 1.50190 1.18726 1.25192 1.21881 1.26592 0.99643 0.87143 0.89072 1.70595 1.08033 1.29318 1.22068 1.26606 0.97484 0.89368 0.97152 1.77992 1.03686 1.26666 1.08951 0.90074 0.87596 0.86986 0.73198 0.82035 0.77521 0.90028 0.93678 0.91866 0.73774 0.74031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.11 8.75 71.98 0.63 -0.48 16 2 C 0.15 2.28 3.77 44.25 0.17 2.44 16 3 H 0.16 1.68 8.14 -2.39 -0.02 1.66 16 4 C 0.51 12.24 7.19 87.66 0.63 12.87 16 5 O -0.54 -17.55 13.55 -3.04 -0.04 -17.59 16 6 N -0.61 -15.79 5.34 -307.52 -1.64 -17.43 16 7 C 0.27 9.77 8.11 133.33 1.08 10.85 16 8 C -0.30 -10.81 9.61 22.11 0.21 -10.60 16 9 C 0.06 2.21 11.44 83.52 0.96 3.16 16 10 N -0.34 -14.76 3.67 -351.85 -1.29 -16.05 16 11 C 0.24 10.68 5.33 85.63 0.46 11.14 16 12 C -0.55 -30.63 9.79 25.60 0.25 -30.37 16 13 H 0.03 1.94 8.06 -2.91 -0.02 1.92 16 14 C 0.02 0.90 5.47 84.65 0.46 1.36 16 15 N -0.94 -56.76 13.96 21.45 0.30 -56.47 16 16 Si 0.95 39.79 27.47 68.60 1.88 41.68 16 17 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 18 H -0.23 -8.33 6.54 99.48 0.65 -7.68 16 19 H -0.28 -11.53 7.11 99.48 0.71 -10.83 16 20 N -0.34 -14.84 12.42 -54.45 -0.68 -15.52 16 21 N -0.37 -7.35 3.04 -335.02 -1.02 -8.37 16 22 C 0.27 5.08 11.77 180.36 2.12 7.20 16 23 N -0.57 -12.94 11.19 -204.01 -2.28 -15.22 16 24 C 0.20 4.14 13.03 180.77 2.36 6.50 16 25 N -0.35 -8.26 12.70 -61.25 -0.78 -9.04 16 26 H 0.08 0.56 7.22 -2.39 -0.02 0.54 16 27 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 28 H 0.11 0.48 7.56 -2.38 -0.02 0.46 16 29 H 0.43 8.05 8.24 -92.71 -0.76 7.28 16 30 H 0.16 5.88 5.92 -2.91 -0.02 5.86 16 31 H 0.21 5.51 8.06 -2.91 -0.02 5.49 16 32 H 0.08 3.20 7.12 -2.39 -0.02 3.18 16 33 H 0.05 1.95 7.57 -2.39 -0.02 1.94 16 34 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 35 H 0.25 2.60 7.32 -2.91 -0.02 2.58 16 36 H 0.24 3.19 8.06 -2.91 -0.02 3.17 16 Total: -1.00 -83.81 318.05 4.09 -79.72 By element: Atomic # 1 Polarization: 19.90 SS G_CDS: 0.31 Total: 20.21 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: 9.32 Total: 14.07 kcal Atomic # 7 Polarization: -130.71 SS G_CDS: -7.39 Total: -138.09 kcal Atomic # 8 Polarization: -17.55 SS G_CDS: -0.04 Total: -17.59 kcal Atomic # 14 Polarization: 39.79 SS G_CDS: 1.88 Total: 41.68 kcal Total: -83.81 4.09 -79.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319660184.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 208.781 kcal (2) G-P(sol) polarization free energy of solvation -83.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds