Wall clock time and date at job start Tue Mar 31 2020 06:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09006 * 109.46895 * 2 1 4 4 C 1.50696 * 109.47347 * 120.00415 * 2 1 3 5 5 O 1.21290 * 120.00012 * 119.99774 * 4 2 1 6 6 N 1.34777 * 119.99736 * 299.99663 * 4 2 1 7 7 C 1.40159 * 119.99983 * 179.97438 * 6 4 2 8 8 C 1.40409 * 125.97033 * 0.02562 * 7 6 4 9 9 C 1.35241 * 107.86602 * 179.73843 * 8 7 6 10 10 N 1.34966 * 107.86079 * 0.39163 * 9 8 7 11 11 C 1.46500 * 125.97782 * 179.87198 * 10 9 8 12 12 C 1.50706 * 109.47299 * 124.71059 * 11 10 9 13 13 H 1.07998 * 119.99503 * 0.02562 * 12 11 10 14 14 C 1.37871 * 120.00434 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99826 * 359.72891 * 14 12 11 16 16 Si 1.86800 * 120.00406 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47364 * 179.72558 * 16 14 12 18 18 H 1.48508 * 109.46883 * 299.72681 * 16 14 12 19 19 H 1.48497 * 109.46870 * 59.72491 * 16 14 12 20 20 N 1.31219 * 125.97718 * 179.97438 * 7 6 4 21 21 N 1.46499 * 109.46816 * 240.00296 * 2 1 3 22 22 C 1.34427 * 126.82417 * 324.99866 * 21 2 1 23 23 N 1.30834 * 108.07622 * 179.97438 * 22 21 2 24 24 C 1.33238 * 109.83191 * 0.02562 * 23 22 21 25 25 N 1.30719 * 108.94324 * 359.74738 * 24 23 22 26 26 H 1.08996 * 109.46892 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46691 * 299.99974 * 1 2 3 28 28 H 1.09003 * 109.47155 * 59.99804 * 1 2 3 29 29 H 0.97003 * 120.00166 * 0.02562 * 6 4 2 30 30 H 1.08002 * 126.06850 * 0.02562 * 8 7 6 31 31 H 1.08003 * 126.07024 * 180.26845 * 9 8 7 32 32 H 1.09004 * 109.47078 * 4.71821 * 11 10 9 33 33 H 1.08993 * 109.47364 * 244.71592 * 11 10 9 34 34 H 0.97000 * 120.00236 * 0.27947 * 15 14 12 35 35 H 1.08001 * 125.96369 * 359.92877 * 22 21 2 36 36 H 1.07995 * 125.53077 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0325 -0.7105 1.2304 5 8 2.7298 -1.6966 1.1190 6 7 1.7069 -0.2500 2.4545 7 6 2.1737 -0.9111 3.5988 8 6 2.9842 -2.0575 3.6161 9 6 3.2189 -2.3803 4.9083 10 7 2.5764 -1.4810 5.6829 11 6 2.5625 -1.4609 7.1477 12 6 3.0376 -0.1167 7.6362 13 1 3.3210 0.6464 6.9264 14 6 3.1104 0.1389 8.9890 15 7 2.7602 -0.7885 9.8532 16 14 3.6985 1.8053 9.5945 17 1 3.6788 1.8277 11.0793 18 1 5.0829 2.0462 9.1141 19 1 2.8013 2.8668 9.0716 20 7 1.9305 -0.5663 4.8414 21 7 2.0183 -0.6906 -1.1962 22 6 1.4558 -1.7518 -1.7999 23 7 2.1932 -2.0691 -2.8330 24 6 3.2305 -1.2375 -2.9206 25 7 3.1644 -0.3722 -1.9430 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.1490 0.5385 2.5435 30 1 3.3581 -2.5850 2.7510 31 1 3.8132 -3.2114 5.2582 32 1 3.2234 -2.2399 7.5280 33 1 1.5480 -1.6392 7.5039 34 1 2.4545 -1.6538 9.5389 35 1 0.5532 -2.2551 -1.4864 36 1 3.9991 -1.2705 -3.6785 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319660185.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:20 Heat of formation + Delta-G solvation = 145.725335 kcal Electronic energy + Delta-G solvation = -22021.914795 eV Core-core repulsion = 18545.715934 eV Total energy + Delta-G solvation = -3476.198861 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.123 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.37002 -40.93350 -39.62004 -35.41754 -35.12117 -33.76108 -31.62316 -31.13947 -30.14793 -29.50203 -26.60580 -25.58770 -23.53968 -22.66549 -22.12520 -21.31517 -20.52003 -19.74991 -17.93991 -17.32047 -17.26977 -16.62318 -15.91004 -15.57118 -15.25120 -15.07843 -14.54508 -14.21887 -14.17086 -13.83791 -13.41084 -13.14386 -13.01208 -12.75113 -12.55753 -12.34259 -11.92153 -11.88738 -11.24714 -10.88832 -10.65594 -10.53372 -10.24813 -10.20626 -10.10155 -9.96662 -9.65690 -9.08800 -8.64295 -8.35897 -7.67968 -6.64374 -4.39002 1.31460 1.80726 1.95662 2.55857 2.69091 2.79525 3.33949 3.35043 3.45269 3.52105 3.56708 3.94890 4.08281 4.19004 4.30701 4.35992 4.55436 4.86481 4.90318 5.06567 5.09287 5.31253 5.36494 5.55926 5.95242 5.98421 6.19591 6.26236 6.32502 6.47576 6.50549 6.65605 7.12047 7.29067 7.59093 7.71639 7.84849 7.88835 8.26350 8.40095 8.54128 9.29329 10.73347 Molecular weight = 290.12amu Principal moments of inertia in cm(-1) A = 0.034325 B = 0.002973 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.539239 B = 9417.284423 C = 9635.496674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.146 3.854 3 H 0.137 0.863 4 C 0.507 3.493 5 O -0.498 6.498 6 N -0.622 5.622 7 C 0.256 3.744 8 C -0.284 4.284 9 C 0.053 3.947 10 N -0.314 5.314 11 C 0.249 3.751 12 C -0.610 4.610 13 H 0.063 0.937 14 C 0.024 3.976 15 N -0.903 5.903 16 Si 1.077 2.923 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.285 1.285 20 N -0.297 5.297 21 N -0.363 5.363 22 C 0.271 3.729 23 N -0.546 5.546 24 C 0.200 3.800 25 N -0.312 5.312 26 H 0.077 0.923 27 H 0.095 0.905 28 H 0.085 0.915 29 H 0.413 0.587 30 H 0.160 0.840 31 H 0.169 0.831 32 H 0.047 0.953 33 H 0.036 0.964 34 H 0.267 0.733 35 H 0.216 0.784 36 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.416 0.706 -20.610 21.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.038 3.962 3 H 0.154 0.846 4 C 0.290 3.710 5 O -0.369 6.369 6 N -0.270 5.270 7 C 0.003 3.997 8 C -0.315 4.315 9 C -0.097 4.097 10 N -0.096 5.096 11 C 0.131 3.869 12 C -0.648 4.648 13 H 0.082 0.918 14 C -0.181 4.181 15 N -0.539 5.539 16 Si 0.903 3.097 17 H -0.205 1.205 18 H -0.212 1.212 19 H -0.211 1.211 20 N -0.128 5.128 21 N -0.154 5.154 22 C -0.026 4.026 23 N -0.273 5.273 24 C -0.103 4.103 25 N -0.139 5.139 26 H 0.096 0.904 27 H 0.114 0.886 28 H 0.104 0.896 29 H 0.249 0.751 30 H 0.177 0.823 31 H 0.186 0.814 32 H 0.065 0.935 33 H 0.053 0.947 34 H 0.077 0.923 35 H 0.232 0.768 36 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -4.761 2.038 -18.487 19.198 hybrid contribution -0.232 -1.167 -1.557 1.960 sum -4.993 0.871 -20.044 20.675 Atomic orbital electron populations 1.22235 0.89697 1.04915 1.05432 1.21105 0.96518 0.98027 0.80537 0.84588 1.20542 0.81300 0.85382 0.83795 1.90731 1.35500 1.25063 1.85656 1.42267 1.51525 1.30693 1.02562 1.19033 0.99570 0.94689 0.86444 1.21506 1.10722 1.02080 0.97235 1.22580 0.99306 0.96784 0.91004 1.48825 1.35171 1.17986 1.07617 1.19798 0.98254 1.00079 0.68803 1.22092 1.49301 0.98483 0.94933 0.91828 1.25933 0.94580 1.05068 0.92534 1.70857 1.40407 1.05577 1.37028 0.83419 0.76396 0.73591 0.76249 1.20468 1.21206 1.21104 1.77352 1.22386 1.15401 0.97637 1.50028 1.19356 1.24620 1.21395 1.25925 0.99167 0.87789 0.89698 1.70576 1.07162 1.28669 1.20859 1.26004 0.97200 0.89949 0.97107 1.78082 1.02663 1.25163 1.07963 0.90400 0.88599 0.89610 0.75120 0.82304 0.81360 0.93531 0.94652 0.92255 0.76809 0.76602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.73 8.75 37.16 0.33 -0.41 16 2 C 0.15 1.22 3.77 -69.08 -0.26 0.96 16 3 H 0.14 0.93 8.14 -51.93 -0.42 0.51 16 4 C 0.51 6.43 7.19 -10.99 -0.08 6.35 16 5 O -0.50 -8.35 13.55 5.55 0.08 -8.28 16 6 N -0.62 -8.34 5.34 -11.13 -0.06 -8.40 16 7 C 0.26 4.81 8.11 -154.39 -1.25 3.56 16 8 C -0.28 -5.44 9.61 -39.83 -0.38 -5.82 16 9 C 0.05 1.03 11.44 -17.24 -0.20 0.83 16 10 N -0.31 -7.11 3.67 -62.56 -0.23 -7.34 16 11 C 0.25 6.14 5.57 -5.19 -0.03 6.11 16 12 C -0.61 -16.82 9.24 -34.44 -0.32 -17.14 16 13 H 0.06 1.83 7.81 -52.49 -0.41 1.42 16 14 C 0.02 0.65 5.46 -17.82 -0.10 0.55 16 15 N -0.90 -25.91 13.65 55.43 0.76 -25.15 16 16 Si 1.08 24.48 29.90 -169.99 -5.08 19.39 16 17 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 18 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 19 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 20 N -0.30 -6.53 12.42 31.44 0.39 -6.14 16 21 N -0.36 -3.90 3.04 -57.24 -0.17 -4.08 16 22 C 0.27 2.71 11.77 -90.65 -1.07 1.64 16 23 N -0.55 -6.43 11.19 -15.83 -0.18 -6.61 16 24 C 0.20 2.23 13.03 -91.81 -1.20 1.03 16 25 N -0.31 -3.93 12.70 29.29 0.37 -3.56 16 26 H 0.08 0.33 7.22 -51.93 -0.38 -0.05 16 27 H 0.10 0.29 7.56 -51.93 -0.39 -0.10 16 28 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.41 4.11 8.24 -40.82 -0.34 3.77 16 30 H 0.16 3.01 5.92 -52.49 -0.31 2.70 16 31 H 0.17 2.68 8.06 -52.48 -0.42 2.25 16 32 H 0.05 1.11 7.94 -51.93 -0.41 0.70 16 33 H 0.04 0.90 8.00 -51.93 -0.42 0.49 16 34 H 0.27 7.47 7.22 -40.82 -0.29 7.18 16 35 H 0.22 1.30 7.32 -52.49 -0.38 0.92 16 36 H 0.22 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 320.35 15.07 4.83 4.83 Total: -1.00 -36.81 320.35 -7.67 -44.48 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -3.82 Total: 3.19 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: -4.55 Total: -2.34 kcal Atomic # 7 Polarization: -62.16 SS G_CDS: 0.88 Total: -61.28 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: 0.08 Total: -8.28 kcal Atomic # 14 Polarization: 24.48 SS G_CDS: -5.08 Total: 19.39 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -36.81 -7.67 -44.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319660185.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.210 kcal (2) G-P(sol) polarization free energy of solvation -36.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 153.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds