Wall clock time and date at job start Tue Mar 31 2020 06:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09006 * 109.46895 * 2 1 4 4 C 1.50696 * 109.47347 * 120.00415 * 2 1 3 5 5 O 1.21290 * 120.00012 * 119.99774 * 4 2 1 6 6 N 1.34777 * 119.99736 * 299.99663 * 4 2 1 7 7 C 1.40159 * 119.99983 * 179.97438 * 6 4 2 8 8 C 1.40409 * 125.97033 * 0.02562 * 7 6 4 9 9 C 1.35241 * 107.86602 * 179.73843 * 8 7 6 10 10 N 1.34966 * 107.86079 * 0.39163 * 9 8 7 11 11 C 1.46500 * 125.97782 * 179.87198 * 10 9 8 12 12 C 1.50706 * 109.47299 * 124.71059 * 11 10 9 13 13 H 1.07998 * 119.99503 * 0.02562 * 12 11 10 14 14 C 1.37871 * 120.00434 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99826 * 359.72891 * 14 12 11 16 16 Si 1.86800 * 120.00406 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47364 * 179.72558 * 16 14 12 18 18 H 1.48508 * 109.46883 * 299.72681 * 16 14 12 19 19 H 1.48497 * 109.46870 * 59.72491 * 16 14 12 20 20 N 1.31219 * 125.97718 * 179.97438 * 7 6 4 21 21 N 1.46499 * 109.46816 * 240.00296 * 2 1 3 22 22 C 1.34427 * 126.82417 * 324.99866 * 21 2 1 23 23 N 1.30834 * 108.07622 * 179.97438 * 22 21 2 24 24 C 1.33238 * 109.83191 * 0.02562 * 23 22 21 25 25 N 1.30719 * 108.94324 * 359.74738 * 24 23 22 26 26 H 1.08996 * 109.46892 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46691 * 299.99974 * 1 2 3 28 28 H 1.09003 * 109.47155 * 59.99804 * 1 2 3 29 29 H 0.97003 * 120.00166 * 0.02562 * 6 4 2 30 30 H 1.08002 * 126.06850 * 0.02562 * 8 7 6 31 31 H 1.08003 * 126.07024 * 180.26845 * 9 8 7 32 32 H 1.09004 * 109.47078 * 4.71821 * 11 10 9 33 33 H 1.08993 * 109.47364 * 244.71592 * 11 10 9 34 34 H 0.97000 * 120.00236 * 0.27947 * 15 14 12 35 35 H 1.08001 * 125.96369 * 359.92877 * 22 21 2 36 36 H 1.07995 * 125.53077 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0325 -0.7105 1.2304 5 8 2.7298 -1.6966 1.1190 6 7 1.7069 -0.2500 2.4545 7 6 2.1737 -0.9111 3.5988 8 6 2.9842 -2.0575 3.6161 9 6 3.2189 -2.3803 4.9083 10 7 2.5764 -1.4810 5.6829 11 6 2.5625 -1.4609 7.1477 12 6 3.0376 -0.1167 7.6362 13 1 3.3210 0.6464 6.9264 14 6 3.1104 0.1389 8.9890 15 7 2.7602 -0.7885 9.8532 16 14 3.6985 1.8053 9.5945 17 1 3.6788 1.8277 11.0793 18 1 5.0829 2.0462 9.1141 19 1 2.8013 2.8668 9.0716 20 7 1.9305 -0.5663 4.8414 21 7 2.0183 -0.6906 -1.1962 22 6 1.4558 -1.7518 -1.7999 23 7 2.1932 -2.0691 -2.8330 24 6 3.2305 -1.2375 -2.9206 25 7 3.1644 -0.3722 -1.9430 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.1490 0.5385 2.5435 30 1 3.3581 -2.5850 2.7510 31 1 3.8132 -3.2114 5.2582 32 1 3.2234 -2.2399 7.5280 33 1 1.5480 -1.6392 7.5039 34 1 2.4545 -1.6538 9.5389 35 1 0.5532 -2.2551 -1.4864 36 1 3.9991 -1.2705 -3.6785 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319660185.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:19 Heat of formation + Delta-G solvation = 121.778418 kcal Electronic energy + Delta-G solvation = -22022.953211 eV Core-core repulsion = 18545.715934 eV Total energy + Delta-G solvation = -3477.237277 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.123 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.16784 -42.35938 -40.83128 -36.56447 -36.19613 -35.57606 -32.84400 -32.34448 -31.17409 -30.85817 -28.29905 -26.43804 -25.18255 -23.92596 -22.93016 -22.55627 -21.84664 -20.96018 -19.28729 -18.95157 -18.25864 -17.94426 -16.95980 -16.77175 -16.36356 -16.15978 -15.79811 -15.59115 -15.33700 -15.08847 -15.01149 -14.25001 -14.04706 -13.85892 -13.69070 -13.39604 -13.31957 -13.21816 -12.62843 -12.54380 -12.11607 -11.96436 -11.77514 -11.42254 -11.07088 -11.03872 -10.80740 -10.71173 -10.63337 -9.91565 -9.29415 -8.79813 -6.57907 0.48572 0.72987 1.03132 1.23476 1.41279 1.51041 1.56851 1.78554 1.98839 2.04699 2.18565 2.47863 2.99782 3.18106 3.41151 3.45923 3.72446 3.81186 3.94424 4.08066 4.24084 4.51905 4.57574 4.61307 4.65598 4.75158 4.75494 4.97880 5.04988 5.22875 5.43905 5.52281 5.73750 5.76146 5.87436 6.07804 6.22537 6.38437 6.76021 6.93177 7.06668 7.17878 8.57108 Molecular weight = 290.12amu Principal moments of inertia in cm(-1) A = 0.034325 B = 0.002973 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.539239 B = 9417.284423 C = 9635.496674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.154 3.846 3 H 0.155 0.845 4 C 0.510 3.490 5 O -0.539 6.539 6 N -0.611 5.611 7 C 0.268 3.732 8 C -0.292 4.292 9 C 0.056 3.944 10 N -0.341 5.341 11 C 0.259 3.741 12 C -0.623 4.623 13 H 0.046 0.954 14 C -0.018 4.018 15 N -0.923 5.923 16 Si 1.119 2.881 17 H -0.276 1.276 18 H -0.273 1.273 19 H -0.273 1.273 20 N -0.337 5.337 21 N -0.370 5.370 22 C 0.272 3.728 23 N -0.573 5.573 24 C 0.197 3.803 25 N -0.348 5.348 26 H 0.083 0.917 27 H 0.113 0.887 28 H 0.105 0.895 29 H 0.430 0.570 30 H 0.164 0.836 31 H 0.199 0.801 32 H 0.053 0.947 33 H 0.020 0.980 34 H 0.261 0.739 35 H 0.249 0.751 36 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.002 1.584 -21.907 22.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.047 3.953 3 H 0.172 0.828 4 C 0.296 3.704 5 O -0.413 6.413 6 N -0.262 5.262 7 C 0.013 3.987 8 C -0.323 4.323 9 C -0.093 4.093 10 N -0.123 5.123 11 C 0.140 3.860 12 C -0.661 4.661 13 H 0.065 0.935 14 C -0.218 4.218 15 N -0.559 5.559 16 Si 0.940 3.060 17 H -0.201 1.201 18 H -0.198 1.198 19 H -0.198 1.198 20 N -0.167 5.167 21 N -0.161 5.161 22 C -0.024 4.024 23 N -0.300 5.300 24 C -0.106 4.106 25 N -0.175 5.175 26 H 0.102 0.898 27 H 0.132 0.868 28 H 0.123 0.877 29 H 0.269 0.731 30 H 0.181 0.819 31 H 0.216 0.784 32 H 0.070 0.930 33 H 0.037 0.963 34 H 0.071 0.929 35 H 0.265 0.735 36 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -5.372 2.928 -19.819 20.742 hybrid contribution -0.060 -1.513 -1.306 2.000 sum -5.432 1.415 -21.125 21.858 Atomic orbital electron populations 1.22340 0.86209 1.05943 1.07290 1.21344 0.98857 0.97596 0.77468 0.82760 1.21432 0.79940 0.84708 0.84356 1.90709 1.37286 1.27110 1.86218 1.42376 1.51521 1.30968 1.01340 1.19372 0.98027 0.94261 0.87012 1.21669 1.10994 1.02439 0.97169 1.23153 0.98476 0.96710 0.90922 1.48590 1.37170 1.19538 1.07001 1.19440 0.97148 0.98911 0.70513 1.22286 1.49399 0.99415 0.94958 0.93542 1.27263 0.94016 1.07609 0.92897 1.70950 1.41742 1.05866 1.37373 0.82887 0.76850 0.70241 0.76035 1.20071 1.19794 1.19815 1.77273 1.24087 1.16593 0.98771 1.50182 1.19045 1.25101 1.21722 1.26621 0.99620 0.87210 0.88921 1.70594 1.07904 1.29446 1.22070 1.26596 0.97502 0.89267 0.97240 1.78010 1.04049 1.26452 1.08967 0.89840 0.86803 0.87654 0.73061 0.81909 0.78386 0.92962 0.96263 0.92925 0.73544 0.74115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.84 8.75 71.99 0.63 -0.21 16 2 C 0.15 2.18 3.77 44.25 0.17 2.35 16 3 H 0.16 1.66 8.14 -2.38 -0.02 1.64 16 4 C 0.51 12.02 7.19 87.66 0.63 12.65 16 5 O -0.54 -17.53 13.55 -3.06 -0.04 -17.57 16 6 N -0.61 -15.38 5.34 -307.52 -1.64 -17.03 16 7 C 0.27 9.90 8.11 133.32 1.08 10.98 16 8 C -0.29 -10.99 9.61 22.11 0.21 -10.77 16 9 C 0.06 2.14 11.44 83.52 0.96 3.09 16 10 N -0.34 -15.53 3.67 -351.83 -1.29 -16.82 16 11 C 0.26 13.02 5.57 85.64 0.48 13.50 16 12 C -0.62 -34.73 9.24 25.60 0.24 -34.50 16 13 H 0.05 2.70 7.81 -2.91 -0.02 2.68 16 14 C -0.02 -0.99 5.46 84.65 0.46 -0.53 16 15 N -0.92 -53.25 13.65 21.45 0.29 -52.96 16 16 Si 1.12 48.76 29.90 68.60 2.05 50.81 16 17 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 18 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 19 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 20 N -0.34 -14.83 12.42 -54.45 -0.68 -15.50 16 21 N -0.37 -7.23 3.04 -335.01 -1.02 -8.25 16 22 C 0.27 4.89 11.77 180.36 2.12 7.01 16 23 N -0.57 -12.71 11.19 -204.00 -2.28 -15.00 16 24 C 0.20 4.15 13.03 180.76 2.36 6.51 16 25 N -0.35 -8.36 12.70 -61.25 -0.78 -9.14 16 26 H 0.08 0.39 7.22 -2.39 -0.02 0.38 16 27 H 0.11 0.25 7.56 -2.39 -0.02 0.23 16 28 H 0.10 0.24 8.14 -2.39 -0.02 0.23 16 29 H 0.43 7.62 8.24 -92.71 -0.76 6.86 16 30 H 0.16 6.06 5.92 -2.91 -0.02 6.04 16 31 H 0.20 6.07 8.06 -2.91 -0.02 6.05 16 32 H 0.05 2.53 7.94 -2.39 -0.02 2.52 16 33 H 0.02 1.02 8.00 -2.39 -0.02 1.00 16 34 H 0.26 14.87 7.22 -92.71 -0.67 14.20 16 35 H 0.25 2.29 7.32 -2.91 -0.02 2.27 16 36 H 0.24 3.24 8.06 -2.91 -0.02 3.22 16 Total: -1.00 -80.62 320.35 4.41 -76.21 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: 0.47 Total: 15.17 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: 9.33 Total: 10.08 kcal Atomic # 7 Polarization: -127.30 SS G_CDS: -7.39 Total: -134.70 kcal Atomic # 8 Polarization: -17.53 SS G_CDS: -0.04 Total: -17.57 kcal Atomic # 14 Polarization: 48.76 SS G_CDS: 2.05 Total: 50.81 kcal Total: -80.62 4.41 -76.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319660185.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 197.992 kcal (2) G-P(sol) polarization free energy of solvation -80.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds