Wall clock time and date at job start Tue Mar 31 2020 05:48:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50701 * 109.46770 * 2 1 4 4 C 1.38559 * 119.84332 * 270.01764 * 3 2 1 5 5 C 1.38056 * 120.39930 * 179.74479 * 4 3 2 6 6 C 1.38706 * 120.09064 * 0.51751 * 5 4 3 7 7 O 1.35633 * 120.15459 * 179.74331 * 6 5 4 8 8 C 1.40200 * 119.69170 * 359.46623 * 6 5 4 9 9 C 1.47390 * 120.20052 * 180.25765 * 8 6 5 10 10 O 1.21509 * 119.99948 * 353.65415 * 9 8 6 11 11 O 1.34751 * 120.00090 * 173.65974 * 9 8 6 12 12 C 1.45203 * 117.00091 * 185.66216 * 11 9 8 13 13 C 1.52993 * 109.47324 * 182.14308 * 12 11 9 14 14 C 1.50697 * 115.55298 * 184.56710 * 13 12 11 15 15 H 1.08001 * 120.00406 * 143.26998 * 14 13 12 16 16 C 1.37878 * 119.99839 * 323.26953 * 14 13 12 17 17 N 1.31516 * 119.99970 * 168.75491 * 16 14 13 18 18 Si 1.86800 * 119.99976 * 348.75696 * 16 14 13 19 19 H 1.48500 * 109.47224 * 95.40215 * 18 16 14 20 20 H 1.48498 * 109.47224 * 215.40279 * 18 16 14 21 21 H 1.48497 * 109.47308 * 335.40218 * 18 16 14 22 22 C 1.52999 * 117.49827 * 38.89415 * 13 12 11 23 23 C 1.53006 * 117.49890 * 330.23477 * 13 12 11 24 24 C 1.37760 * 119.84328 * 90.00276 * 3 2 1 25 25 H 1.08999 * 109.47141 * 299.99819 * 1 2 3 26 26 H 1.09001 * 109.46936 * 60.00642 * 1 2 3 27 27 H 1.09005 * 109.47111 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46863 * 239.99720 * 2 1 3 29 29 H 1.09000 * 109.46912 * 120.00143 * 2 1 3 30 30 H 1.08000 * 119.80432 * 0.02562 * 4 3 2 31 31 H 1.08006 * 119.95635 * 180.28194 * 5 4 3 32 32 H 0.96706 * 114.00099 * 269.72076 * 7 6 5 33 33 H 1.08998 * 109.46842 * 302.14358 * 12 11 9 34 34 H 1.08997 * 109.47078 * 62.13843 * 12 11 9 35 35 H 0.97005 * 119.99627 * 179.97438 * 17 16 14 36 36 H 1.09001 * 117.50068 * 0.02562 * 22 13 12 37 37 H 1.09008 * 117.49844 * 145.02385 * 22 13 12 38 38 H 1.08994 * 117.49818 * 214.97756 * 23 13 12 39 39 H 1.09000 * 117.49792 * 359.97438 * 23 13 12 40 40 H 1.08003 * 120.05283 * 0.02562 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2618 2.0711 -1.2018 5 6 2.7169 3.3744 -1.2152 6 6 2.9580 4.0391 -0.0219 7 8 3.4101 5.3178 -0.0336 8 6 2.7267 3.3850 1.1964 9 6 2.9738 4.0826 2.4710 10 8 3.4869 5.1841 2.4712 11 8 2.6307 3.4989 3.6361 12 6 2.7858 4.2928 4.8419 13 6 2.4004 3.4509 6.0599 14 6 2.4084 4.1767 7.3806 15 1 1.6634 3.9465 8.1278 16 6 3.3669 5.1345 7.6350 17 7 3.2492 5.9205 8.6829 18 14 4.8327 5.3160 6.4913 19 1 4.5537 6.3805 5.4941 20 1 6.0353 5.6813 7.2820 21 1 5.0742 4.0304 5.7883 22 6 2.8151 1.9782 6.0605 23 6 1.3463 2.3600 5.8597 24 6 2.2609 2.0672 1.1949 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 2.0792 1.5568 -2.1338 31 1 2.8890 3.8759 -2.1562 32 1 4.3741 5.3942 -0.0370 33 1 3.8235 4.6129 4.9352 34 1 2.1392 5.1684 4.7861 35 1 3.9238 6.5942 8.8620 36 1 3.3629 1.6092 5.1935 37 1 3.0934 1.5341 7.0164 38 1 0.6591 2.1670 6.6834 39 1 0.9272 2.2424 4.8604 40 1 2.0808 1.5563 2.1293 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327115309.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:14 Heat of formation + Delta-G solvation = -73.795464 kcal Electronic energy + Delta-G solvation = -23114.376666 eV Core-core repulsion = 19667.613510 eV Total energy + Delta-G solvation = -3446.763156 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.62085 -39.28008 -37.42482 -36.94883 -35.20714 -33.63874 -32.28532 -31.66302 -28.89690 -27.78284 -25.51773 -24.04243 -23.89402 -21.94329 -21.40292 -20.30379 -19.17555 -18.50709 -17.58992 -16.98284 -16.15093 -16.06890 -15.83206 -15.50155 -14.89266 -14.61388 -14.27863 -14.02088 -13.68330 -13.42127 -13.34307 -12.99305 -12.68277 -12.55979 -12.34616 -11.83898 -11.75826 -11.38430 -11.20921 -11.12565 -10.88611 -10.79102 -10.48603 -10.44608 -10.13024 -9.71480 -9.51914 -9.29690 -9.25274 -8.73734 -8.70341 -8.35833 -6.26523 -4.21344 0.55243 1.01455 2.65207 2.98489 3.24509 3.32290 3.34989 3.51090 4.02343 4.27358 4.45045 4.50689 4.71293 4.76216 4.87842 5.09807 5.12685 5.17470 5.26556 5.34356 5.51210 5.63057 5.68170 5.71106 5.75539 5.81581 5.93218 5.97767 5.99179 6.07316 6.20895 6.27903 6.50184 6.51266 6.58096 6.71653 6.93268 6.99683 7.20791 7.53536 7.60634 8.09939 8.39139 8.78255 9.35947 10.85434 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.019465 B = 0.004898 C = 0.004087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.132670 B = 5714.838629 C = 6850.073804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.083 4.083 3 C -0.108 4.108 4 C -0.071 4.071 5 C -0.158 4.158 6 C 0.165 3.835 7 O -0.480 6.480 8 C -0.145 4.145 9 C 0.498 3.502 10 O -0.496 6.496 11 O -0.349 6.349 12 C 0.088 3.912 13 C 0.004 3.996 14 C -0.483 4.483 15 H 0.086 0.914 16 C 0.079 3.921 17 N -0.883 5.883 18 Si 0.872 3.128 19 H -0.272 1.272 20 H -0.290 1.290 21 H -0.259 1.259 22 C -0.199 4.199 23 C -0.178 4.178 24 C -0.044 4.044 25 H 0.059 0.941 26 H 0.055 0.945 27 H 0.059 0.941 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.131 0.869 31 H 0.137 0.863 32 H 0.397 0.603 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.269 0.731 36 H 0.071 0.929 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.157 -10.572 -21.211 23.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.120 4.120 3 C -0.108 4.108 4 C -0.090 4.090 5 C -0.176 4.176 6 C 0.119 3.881 7 O -0.291 6.291 8 C -0.147 4.147 9 C 0.342 3.658 10 O -0.385 6.385 11 O -0.265 6.265 12 C 0.016 3.984 13 C 0.003 3.997 14 C -0.520 4.520 15 H 0.104 0.896 16 C -0.125 4.125 17 N -0.519 5.519 18 Si 0.702 3.298 19 H -0.198 1.198 20 H -0.217 1.217 21 H -0.185 1.185 22 C -0.237 4.237 23 C -0.215 4.215 24 C -0.062 4.062 25 H 0.079 0.921 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.091 0.909 29 H 0.095 0.905 30 H 0.149 0.851 31 H 0.154 0.846 32 H 0.255 0.745 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.079 0.921 36 H 0.089 0.911 37 H 0.103 0.897 38 H 0.100 0.900 39 H 0.097 0.903 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -1.503 -9.911 -21.017 23.285 hybrid contribution 1.393 0.333 -0.462 1.505 sum -0.109 -9.578 -21.478 23.517 Atomic orbital electron populations 1.21781 0.94505 1.01898 1.02472 1.20537 0.96371 0.91887 1.03219 1.19899 1.01062 0.97216 0.92604 1.21123 0.96081 0.93834 0.97914 1.21349 1.03766 0.95003 0.97505 1.18500 0.95302 0.83759 0.90501 1.84733 1.27429 1.20916 1.96037 1.19729 1.08653 0.95466 0.90806 1.20912 0.76093 0.84133 0.84704 1.90845 1.39605 1.20050 1.88041 1.86494 1.77841 1.46688 1.15505 1.23554 1.01420 0.94012 0.79381 1.19379 1.00338 0.87546 0.92435 1.20295 1.15055 1.19864 0.96767 0.89594 1.24991 0.97676 0.94523 0.95342 1.69894 1.34729 1.19087 1.28198 0.87155 0.83118 0.79270 0.80218 1.19841 1.21744 1.18539 1.23102 0.97147 1.02585 1.00857 1.22735 0.91829 1.06362 1.00558 1.21372 0.93529 0.92339 0.98996 0.92140 0.92630 0.92235 0.90888 0.90520 0.85138 0.84559 0.74477 0.91650 0.90644 0.92119 0.91058 0.89700 0.89953 0.90313 0.83837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.90 37.16 0.37 -0.73 16 2 C -0.08 -0.63 6.05 -27.88 -0.17 -0.79 16 3 C -0.11 -1.06 5.13 -104.68 -0.54 -1.60 16 4 C -0.07 -0.63 9.68 -39.53 -0.38 -1.01 16 5 C -0.16 -1.59 9.98 -39.48 -0.39 -1.98 16 6 C 0.17 2.21 6.72 -38.67 -0.26 1.95 16 7 O -0.48 -6.66 11.60 -40.39 -0.47 -7.13 16 8 C -0.14 -2.20 5.89 -104.86 -0.62 -2.82 16 9 C 0.50 9.66 7.87 34.46 0.27 9.93 16 10 O -0.50 -10.88 14.93 -26.57 -0.40 -11.28 16 11 O -0.35 -7.16 7.76 -40.63 -0.32 -7.47 16 12 C 0.09 2.09 4.26 37.15 0.16 2.25 16 13 C 0.00 0.10 1.82 -155.66 -0.28 -0.19 16 14 C -0.48 -13.55 9.57 -34.44 -0.33 -13.88 16 15 H 0.09 2.57 8.06 -52.49 -0.42 2.15 16 16 C 0.08 2.27 5.43 -17.82 -0.10 2.17 16 17 N -0.88 -26.59 13.96 55.43 0.77 -25.82 16 18 Si 0.87 22.27 24.22 -169.99 -4.12 18.15 16 19 H -0.27 -7.02 7.11 56.52 0.40 -6.62 16 20 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 21 H -0.26 -6.44 6.38 56.52 0.36 -6.08 16 22 C -0.20 -4.26 9.66 -26.69 -0.26 -4.52 16 23 C -0.18 -3.68 9.63 -26.69 -0.26 -3.94 16 24 C -0.04 -0.56 9.25 -39.18 -0.36 -0.92 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 29 H 0.08 0.57 8.08 -51.93 -0.42 0.15 16 30 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 31 H 0.14 1.06 8.06 -52.48 -0.42 0.63 16 32 H 0.40 3.96 9.06 45.56 0.41 4.37 16 33 H 0.07 1.64 2.47 -51.93 -0.13 1.51 16 34 H 0.08 1.82 8.14 -51.93 -0.42 1.40 16 35 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 36 H 0.07 1.42 7.81 -51.93 -0.41 1.02 16 37 H 0.08 1.80 8.14 -51.92 -0.42 1.38 16 38 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 39 H 0.08 1.48 7.51 -51.93 -0.39 1.09 16 40 H 0.14 1.79 7.63 -52.48 -0.40 1.39 16 LS Contribution 335.87 15.07 5.06 5.06 Total: -1.00 -32.86 335.87 -7.34 -40.20 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -4.73 Total: 4.37 kcal Atomic # 6 Polarization: -12.93 SS G_CDS: -3.15 Total: -16.08 kcal Atomic # 7 Polarization: -26.59 SS G_CDS: 0.77 Total: -25.82 kcal Atomic # 8 Polarization: -24.70 SS G_CDS: -1.18 Total: -25.88 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.12 Total: 18.15 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.86 -7.34 -40.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327115309.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.597 kcal (2) G-P(sol) polarization free energy of solvation -32.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds