Wall clock time and date at job start Tue Mar 31 2020 05:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50701 * 109.46770 * 2 1 4 4 C 1.38559 * 119.84332 * 270.01764 * 3 2 1 5 5 C 1.38056 * 120.39930 * 179.74479 * 4 3 2 6 6 C 1.38706 * 120.09064 * 0.51751 * 5 4 3 7 7 O 1.35633 * 120.15459 * 179.74331 * 6 5 4 8 8 C 1.40200 * 119.69170 * 359.46623 * 6 5 4 9 9 C 1.47390 * 120.20052 * 180.25765 * 8 6 5 10 10 O 1.21509 * 119.99948 * 353.65415 * 9 8 6 11 11 O 1.34751 * 120.00090 * 173.65974 * 9 8 6 12 12 C 1.45203 * 117.00091 * 185.66216 * 11 9 8 13 13 C 1.52993 * 109.47324 * 182.14308 * 12 11 9 14 14 C 1.50697 * 115.55298 * 184.56710 * 13 12 11 15 15 H 1.08001 * 120.00406 * 143.26998 * 14 13 12 16 16 C 1.37878 * 119.99839 * 323.26953 * 14 13 12 17 17 N 1.31516 * 119.99970 * 168.75491 * 16 14 13 18 18 Si 1.86800 * 119.99976 * 348.75696 * 16 14 13 19 19 H 1.48500 * 109.47224 * 95.40215 * 18 16 14 20 20 H 1.48498 * 109.47224 * 215.40279 * 18 16 14 21 21 H 1.48497 * 109.47308 * 335.40218 * 18 16 14 22 22 C 1.52999 * 117.49827 * 38.89415 * 13 12 11 23 23 C 1.53006 * 117.49890 * 330.23477 * 13 12 11 24 24 C 1.37760 * 119.84328 * 90.00276 * 3 2 1 25 25 H 1.08999 * 109.47141 * 299.99819 * 1 2 3 26 26 H 1.09001 * 109.46936 * 60.00642 * 1 2 3 27 27 H 1.09005 * 109.47111 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46863 * 239.99720 * 2 1 3 29 29 H 1.09000 * 109.46912 * 120.00143 * 2 1 3 30 30 H 1.08000 * 119.80432 * 0.02562 * 4 3 2 31 31 H 1.08006 * 119.95635 * 180.28194 * 5 4 3 32 32 H 0.96706 * 114.00099 * 269.72076 * 7 6 5 33 33 H 1.08998 * 109.46842 * 302.14358 * 12 11 9 34 34 H 1.08997 * 109.47078 * 62.13843 * 12 11 9 35 35 H 0.97005 * 119.99627 * 179.97438 * 17 16 14 36 36 H 1.09001 * 117.50068 * 0.02562 * 22 13 12 37 37 H 1.09008 * 117.49844 * 145.02385 * 22 13 12 38 38 H 1.08994 * 117.49818 * 214.97756 * 23 13 12 39 39 H 1.09000 * 117.49792 * 359.97438 * 23 13 12 40 40 H 1.08003 * 120.05283 * 0.02562 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2618 2.0711 -1.2018 5 6 2.7169 3.3744 -1.2152 6 6 2.9580 4.0391 -0.0219 7 8 3.4101 5.3178 -0.0336 8 6 2.7267 3.3850 1.1964 9 6 2.9738 4.0826 2.4710 10 8 3.4869 5.1841 2.4712 11 8 2.6307 3.4989 3.6361 12 6 2.7858 4.2928 4.8419 13 6 2.4004 3.4509 6.0599 14 6 2.4084 4.1767 7.3806 15 1 1.6634 3.9465 8.1278 16 6 3.3669 5.1345 7.6350 17 7 3.2492 5.9205 8.6829 18 14 4.8327 5.3160 6.4913 19 1 4.5537 6.3805 5.4941 20 1 6.0353 5.6813 7.2820 21 1 5.0742 4.0304 5.7883 22 6 2.8151 1.9782 6.0605 23 6 1.3463 2.3600 5.8597 24 6 2.2609 2.0672 1.1949 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 2.0792 1.5568 -2.1338 31 1 2.8890 3.8759 -2.1562 32 1 4.3741 5.3942 -0.0370 33 1 3.8235 4.6129 4.9352 34 1 2.1392 5.1684 4.7861 35 1 3.9238 6.5942 8.8620 36 1 3.3629 1.6092 5.1935 37 1 3.0934 1.5341 7.0164 38 1 0.6591 2.1670 6.6834 39 1 0.9272 2.2424 4.8604 40 1 2.0808 1.5563 2.1293 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327115309.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:13 Heat of formation + Delta-G solvation = -93.976339 kcal Electronic energy + Delta-G solvation = -23115.251774 eV Core-core repulsion = 19667.613510 eV Total energy + Delta-G solvation = -3447.638264 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.90085 -40.51603 -38.83656 -38.18788 -36.87295 -34.46040 -34.36095 -32.61787 -29.76456 -29.51950 -27.45632 -25.25338 -24.61856 -23.13740 -22.93563 -21.43788 -21.14461 -19.56224 -18.95897 -18.79085 -17.70705 -17.51459 -17.01334 -16.60410 -16.42933 -15.92258 -15.48223 -15.23397 -14.98033 -14.68939 -14.64543 -14.32384 -14.08772 -13.64862 -13.51751 -13.19193 -13.09661 -12.75531 -12.51932 -12.43693 -12.30906 -12.12116 -11.85285 -11.79852 -11.74846 -11.52777 -11.28832 -11.20225 -10.70113 -10.34168 -10.16975 -9.57954 -8.48841 -6.45146 -0.46045 0.17871 1.18576 1.22418 1.26523 1.36098 1.56168 2.14346 2.54477 2.71216 3.12976 3.30552 3.46931 3.74980 3.83571 3.89345 3.95774 4.10577 4.20014 4.24324 4.38511 4.42654 4.56068 4.58610 4.70485 4.76923 4.90573 4.93062 4.95515 5.05048 5.14754 5.16463 5.19715 5.21776 5.35483 5.45669 5.51688 5.54703 5.55367 5.73802 6.16009 6.54351 6.58476 6.67803 7.14088 8.67474 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.019465 B = 0.004898 C = 0.004087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.132670 B = 5714.838629 C = 6850.073804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.081 4.081 3 C -0.103 4.103 4 C -0.052 4.052 5 C -0.150 4.150 6 C 0.151 3.849 7 O -0.500 6.500 8 C -0.177 4.177 9 C 0.493 3.507 10 O -0.532 6.532 11 O -0.343 6.343 12 C 0.098 3.902 13 C -0.035 4.035 14 C -0.485 4.485 15 H 0.055 0.945 16 C 0.034 3.966 17 N -0.928 5.928 18 Si 0.927 3.073 19 H -0.283 1.283 20 H -0.283 1.283 21 H -0.248 1.248 22 C -0.180 4.180 23 C -0.154 4.154 24 C -0.051 4.051 25 H 0.042 0.958 26 H 0.061 0.939 27 H 0.072 0.928 28 H 0.098 0.902 29 H 0.076 0.924 30 H 0.173 0.827 31 H 0.164 0.836 32 H 0.409 0.591 33 H 0.051 0.949 34 H 0.056 0.944 35 H 0.272 0.728 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.102 0.898 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.211 -13.322 -24.961 28.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.118 4.118 3 C -0.103 4.103 4 C -0.069 4.069 5 C -0.168 4.168 6 C 0.106 3.894 7 O -0.313 6.313 8 C -0.179 4.179 9 C 0.339 3.661 10 O -0.423 6.423 11 O -0.259 6.259 12 C 0.025 3.975 13 C -0.036 4.036 14 C -0.523 4.523 15 H 0.073 0.927 16 C -0.166 4.166 17 N -0.566 5.566 18 Si 0.756 3.244 19 H -0.210 1.210 20 H -0.210 1.210 21 H -0.173 1.173 22 C -0.217 4.217 23 C -0.191 4.191 24 C -0.069 4.069 25 H 0.061 0.939 26 H 0.080 0.920 27 H 0.091 0.909 28 H 0.117 0.883 29 H 0.094 0.906 30 H 0.190 0.810 31 H 0.182 0.818 32 H 0.269 0.731 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.109 0.891 37 H 0.104 0.896 38 H 0.104 0.896 39 H 0.120 0.880 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -1.555 -12.696 -24.780 27.886 hybrid contribution 1.299 1.099 0.582 1.798 sum -0.257 -11.596 -24.197 26.834 Atomic orbital electron populations 1.21787 0.94348 1.02629 1.01929 1.20610 0.96345 0.90318 1.04542 1.20210 0.99883 0.98287 0.91930 1.21630 0.93069 0.93116 0.99106 1.21647 1.02622 0.95427 0.97107 1.18820 0.95853 0.83716 0.91052 1.84686 1.28725 1.21803 1.96114 1.19681 1.12360 0.96808 0.89006 1.21795 0.74909 0.84047 0.85306 1.90816 1.41480 1.21714 1.88330 1.86480 1.78174 1.46028 1.15214 1.23081 0.99905 0.93665 0.80846 1.19264 1.04611 0.88749 0.90975 1.20459 1.13804 1.19989 0.98025 0.92731 1.25602 0.99946 0.94540 0.96553 1.69989 1.36019 1.20397 1.30194 0.86265 0.80538 0.79323 0.78313 1.20976 1.20994 1.17296 1.23083 0.97785 0.99113 1.01757 1.22797 0.91565 1.02756 1.01952 1.21422 0.93837 0.91377 1.00254 0.93850 0.92037 0.90937 0.88306 0.90567 0.80966 0.81807 0.73126 0.93167 0.92516 0.91878 0.89089 0.89631 0.89637 0.88019 0.84268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.90 71.98 0.71 -0.95 16 2 C -0.08 -0.88 6.05 29.85 0.18 -0.70 16 3 C -0.10 -1.65 5.13 -19.90 -0.10 -1.75 16 4 C -0.05 -0.65 9.68 22.30 0.22 -0.44 16 5 C -0.15 -2.45 9.98 22.34 0.22 -2.23 16 6 C 0.15 3.82 6.72 22.86 0.15 3.97 16 7 O -0.50 -13.68 11.60 -68.63 -0.80 -14.48 16 8 C -0.18 -5.23 5.89 -20.02 -0.12 -5.35 16 9 C 0.49 19.30 7.87 70.23 0.55 19.85 16 10 O -0.53 -23.96 14.93 26.78 0.40 -23.56 16 11 O -0.34 -13.99 7.76 -56.62 -0.44 -14.43 16 12 C 0.10 4.69 4.26 71.98 0.31 4.99 16 13 C -0.04 -1.70 1.82 -52.93 -0.10 -1.79 16 14 C -0.49 -28.02 9.57 25.60 0.25 -27.77 16 15 H 0.05 3.40 8.06 -2.91 -0.02 3.38 16 16 C 0.03 1.99 5.43 84.65 0.46 2.45 16 17 N -0.93 -57.86 13.96 21.45 0.30 -57.56 16 18 Si 0.93 47.37 24.22 68.60 1.66 49.04 16 19 H -0.28 -14.80 7.11 99.48 0.71 -14.09 16 20 H -0.28 -13.94 7.11 99.48 0.71 -13.23 16 21 H -0.25 -12.03 6.38 99.48 0.63 -11.40 16 22 C -0.18 -7.38 9.66 30.62 0.30 -7.08 16 23 C -0.15 -6.14 9.63 30.62 0.29 -5.85 16 24 C -0.05 -1.18 9.25 22.53 0.21 -0.97 16 25 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 26 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 28 H 0.10 0.62 8.08 -2.39 -0.02 0.60 16 29 H 0.08 0.87 8.08 -2.39 -0.02 0.85 16 30 H 0.17 0.83 8.06 -2.91 -0.02 0.81 16 31 H 0.16 1.78 8.06 -2.91 -0.02 1.76 16 32 H 0.41 8.16 9.06 -74.05 -0.67 7.48 16 33 H 0.05 2.55 2.47 -2.39 -0.01 2.55 16 34 H 0.06 2.85 8.14 -2.39 -0.02 2.83 16 35 H 0.27 15.85 8.31 -92.70 -0.77 15.08 16 36 H 0.09 3.39 7.81 -2.39 -0.02 3.37 16 37 H 0.09 3.50 8.14 -2.38 -0.02 3.48 16 38 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16 39 H 0.10 3.60 7.51 -2.39 -0.02 3.58 16 40 H 0.14 3.26 7.63 -2.91 -0.02 3.24 16 Total: -1.00 -74.15 335.87 4.97 -69.18 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: 0.32 Total: 15.43 kcal Atomic # 6 Polarization: -27.14 SS G_CDS: 3.53 Total: -23.61 kcal Atomic # 7 Polarization: -57.86 SS G_CDS: 0.30 Total: -57.56 kcal Atomic # 8 Polarization: -51.63 SS G_CDS: -0.84 Total: -52.47 kcal Atomic # 14 Polarization: 47.37 SS G_CDS: 1.66 Total: 49.04 kcal Total: -74.15 4.97 -69.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327115309.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.800 kcal (2) G-P(sol) polarization free energy of solvation -74.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds