Wall clock time and date at job start Tue Mar 31 2020 06:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35905 * 116.99678 * 2 1 4 4 C 1.38736 * 120.05326 * 180.02562 * 3 2 1 5 5 C 1.38139 * 119.94353 * 180.02562 * 4 3 2 6 6 C 1.38266 * 120.05522 * 0.02687 * 5 4 3 7 7 C 1.50705 * 119.94231 * 179.97438 * 6 5 4 8 8 H 1.08999 * 115.55004 * 334.32157 * 7 6 5 9 9 C 1.53001 * 117.51317 * 188.62425 * 7 6 5 10 10 C 1.52993 * 117.49937 * 119.99259 * 7 6 5 11 11 H 1.08999 * 117.50004 * 359.97438 * 10 7 6 12 12 C 1.50700 * 117.49879 * 214.99880 * 10 7 6 13 13 O 1.20822 * 119.99958 * 0.02562 * 12 10 7 14 14 O 1.34234 * 120.00068 * 180.02562 * 12 10 7 15 15 C 1.45196 * 116.99938 * 179.97438 * 14 12 10 16 16 C 1.52998 * 109.47070 * 179.97438 * 15 14 12 17 17 C 1.50703 * 109.47221 * 180.02562 * 16 15 14 18 18 H 1.07998 * 119.99956 * 359.97438 * 17 16 15 19 19 C 1.37876 * 120.00171 * 180.02562 * 17 16 15 20 20 N 1.31513 * 120.00377 * 179.97438 * 19 17 16 21 21 Si 1.86810 * 119.99898 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47093 * 90.00118 * 21 19 17 23 23 H 1.48500 * 109.46823 * 210.00246 * 21 19 17 24 24 H 1.48499 * 109.46973 * 329.99936 * 21 19 17 25 25 C 1.38260 * 120.11403 * 0.23929 * 6 5 4 26 26 C 1.38151 * 120.05092 * 359.46645 * 25 6 5 27 27 H 1.08994 * 109.46973 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47016 * 299.99468 * 1 2 3 29 29 H 1.08997 * 109.47257 * 59.99647 * 1 2 3 30 30 H 1.08007 * 120.02636 * 359.97438 * 4 3 2 31 31 H 1.08005 * 119.97056 * 179.97438 * 5 4 3 32 32 H 1.09000 * 117.49307 * 145.03122 * 9 7 6 33 33 H 1.08993 * 117.50144 * 0.02562 * 9 7 6 34 34 H 1.08996 * 109.47465 * 299.99911 * 15 14 12 35 35 H 1.08999 * 109.47008 * 59.99921 * 15 14 12 36 36 H 1.08998 * 109.47592 * 300.00297 * 16 15 14 37 37 H 1.08999 * 109.47084 * 60.00195 * 16 15 14 38 38 H 0.96994 * 120.00157 * 180.02562 * 20 19 17 39 39 H 1.07993 * 119.97724 * 179.70790 * 25 6 5 40 40 H 1.08003 * 120.02631 * 180.29121 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 3.4313 1.2849 -0.0005 5 6 4.0560 2.5170 0.0000 6 6 3.3018 3.6758 0.0016 7 6 3.9860 5.0186 0.0028 8 1 4.9893 5.0347 0.4285 9 6 3.1116 6.2572 0.2081 10 6 3.7017 5.9573 -1.1714 11 1 3.0202 5.6036 -1.9450 12 6 4.8303 6.8334 -1.6509 13 8 5.9099 6.7772 -1.1113 14 8 4.6361 7.6763 -2.6774 15 6 5.7673 8.4901 -3.0852 16 6 5.3580 9.3801 -4.2604 17 6 6.5323 10.2243 -4.6841 18 1 7.4760 10.1352 -4.1666 19 6 6.4016 11.1111 -5.7317 20 7 7.4262 11.8481 -6.1012 21 14 4.7690 11.2656 -6.6264 22 1 3.9400 12.3067 -5.9674 23 1 5.0136 11.6491 -8.0400 24 1 4.0556 9.9640 -6.5829 25 6 1.9210 3.6048 0.0077 26 6 1.2915 2.3751 0.0011 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 4.0209 0.3800 -0.0005 31 1 5.1345 2.5751 0.0000 32 1 3.5397 7.0882 0.7687 33 1 2.0413 6.1011 0.3427 34 1 6.0859 9.1140 -2.2502 35 1 6.5897 7.8426 -3.3894 36 1 5.0397 8.7559 -5.0953 37 1 4.5355 10.0275 -3.9566 38 1 7.3341 12.4722 -6.8379 39 1 1.3341 4.5113 0.0138 40 1 0.2129 2.3201 0.0011 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327178301.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:30 Heat of formation + Delta-G solvation = -80.451067 kcal Electronic energy + Delta-G solvation = -21440.176383 eV Core-core repulsion = 17993.124619 eV Total energy + Delta-G solvation = -3447.051764 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.72768 -40.11833 -38.51724 -36.71287 -35.65696 -33.30899 -31.40596 -30.83518 -30.32209 -27.72773 -26.01727 -24.12884 -23.98629 -22.56311 -20.95497 -20.63956 -19.98610 -18.58556 -17.81038 -16.93363 -16.41963 -16.11285 -16.05566 -15.94436 -15.73077 -15.03916 -14.24680 -14.13037 -13.90801 -13.67958 -13.39618 -13.15656 -12.99082 -12.61913 -12.37493 -12.20990 -11.83615 -11.65718 -11.54865 -11.27435 -11.18246 -10.75630 -10.70905 -10.67734 -10.51142 -9.98403 -9.91323 -9.70784 -9.35369 -9.31495 -8.62851 -8.34264 -6.13344 -4.14592 1.01434 1.03642 2.33482 2.89946 2.96571 3.27545 3.34357 3.35210 3.39562 3.80288 4.35351 4.38196 4.42373 4.51291 4.54568 4.64194 4.70602 4.73577 4.97117 5.03786 5.04698 5.16927 5.18733 5.20137 5.34166 5.44659 5.69511 5.73002 5.79880 5.96168 5.96351 5.96875 6.05690 6.34617 6.42362 6.44379 6.78464 7.02874 7.18361 7.21597 7.61861 8.13238 8.39209 8.88229 9.46149 10.99166 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.029104 B = 0.002428 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.840597 B =11529.561930 C =11939.236641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.319 6.319 3 C 0.122 3.878 4 C -0.149 4.149 5 C -0.067 4.067 6 C -0.089 4.089 7 C -0.079 4.079 8 H 0.129 0.871 9 C -0.143 4.143 10 C -0.154 4.154 11 H 0.135 0.865 12 C 0.486 3.514 13 O -0.514 6.514 14 O -0.356 6.356 15 C 0.082 3.918 16 C -0.009 4.009 17 C -0.528 4.528 18 H 0.075 0.925 19 C 0.072 3.928 20 N -0.897 5.897 21 Si 0.881 3.119 22 H -0.275 1.275 23 H -0.286 1.286 24 H -0.263 1.263 25 C -0.078 4.078 26 C -0.205 4.205 27 H 0.099 0.901 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.132 0.868 31 H 0.133 0.867 32 H 0.108 0.892 33 H 0.111 0.889 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.028 0.972 37 H 0.024 0.976 38 H 0.266 0.734 39 H 0.129 0.871 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.054 -21.913 14.645 30.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.232 6.232 3 C 0.077 3.923 4 C -0.167 4.167 5 C -0.085 4.085 6 C -0.089 4.089 7 C -0.097 4.097 8 H 0.147 0.853 9 C -0.180 4.180 10 C -0.173 4.173 11 H 0.153 0.847 12 C 0.329 3.671 13 O -0.403 6.403 14 O -0.272 6.272 15 C 0.010 3.990 16 C -0.047 4.047 17 C -0.565 4.565 18 H 0.094 0.906 19 C -0.131 4.131 20 N -0.535 5.535 21 Si 0.708 3.292 22 H -0.201 1.201 23 H -0.212 1.212 24 H -0.188 1.188 25 C -0.096 4.096 26 C -0.224 4.224 27 H 0.118 0.882 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.150 0.850 31 H 0.151 0.849 32 H 0.126 0.874 33 H 0.129 0.871 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.046 0.954 37 H 0.042 0.958 38 H 0.076 0.924 39 H 0.146 0.854 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -15.569 -21.942 14.632 30.626 hybrid contribution -0.872 0.420 -0.650 1.166 sum -16.441 -21.522 13.982 30.480 Atomic orbital electron populations 1.23060 0.78354 1.03964 1.01426 1.86071 1.21428 1.27009 1.88742 1.19071 0.92425 0.84151 0.96630 1.20429 0.91355 0.98654 1.06287 1.20850 1.00237 0.90653 0.96759 1.19002 0.93050 0.93121 1.03739 1.21101 1.00997 0.87923 0.99694 0.85314 1.23196 1.00179 0.99281 0.95296 1.21886 0.99876 1.01630 0.93862 0.84727 1.22366 0.87952 0.78691 0.78056 1.90635 1.26892 1.66490 1.56324 1.86472 1.44528 1.49481 1.46759 1.23408 0.85259 0.91686 0.98685 1.19628 0.98379 0.94373 0.92311 1.20840 0.97408 1.21170 1.17120 0.90644 1.24942 0.96758 0.94878 0.96472 1.69892 1.30463 1.24646 1.28468 0.86745 0.84221 0.79166 0.79045 1.20055 1.21162 1.18751 1.20877 0.93924 0.97301 0.97448 1.21196 1.00031 0.92194 1.08952 0.88242 0.92630 0.92557 0.85020 0.84886 0.87395 0.87063 0.91679 0.91634 0.95364 0.95791 0.92428 0.85355 0.85381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.13 16 2 O -0.32 -2.85 10.50 -19.44 -0.20 -3.05 16 3 C 0.12 1.16 6.69 -39.22 -0.26 0.89 16 4 C -0.15 -1.40 9.99 -39.43 -0.39 -1.79 16 5 C -0.07 -0.64 9.73 -39.61 -0.39 -1.02 16 6 C -0.09 -0.87 5.61 -104.60 -0.59 -1.46 16 7 C -0.08 -0.84 5.55 -91.77 -0.51 -1.35 16 8 H 0.13 1.47 7.67 -51.93 -0.40 1.07 16 9 C -0.14 -1.36 9.56 -26.73 -0.26 -1.62 16 10 C -0.15 -1.88 5.94 -91.77 -0.54 -2.42 16 11 H 0.13 1.48 8.14 -51.93 -0.42 1.05 16 12 C 0.49 8.27 7.74 36.01 0.28 8.55 16 13 O -0.51 -9.95 16.01 -18.75 -0.30 -10.25 16 14 O -0.36 -6.89 10.22 -39.27 -0.40 -7.29 16 15 C 0.08 1.78 5.40 37.16 0.20 1.98 16 16 C -0.01 -0.23 4.42 -27.88 -0.12 -0.35 16 17 C -0.53 -15.08 9.66 -34.44 -0.33 -15.42 16 18 H 0.08 2.31 7.99 -52.49 -0.42 1.89 16 19 C 0.07 2.08 5.47 -17.82 -0.10 1.99 16 20 N -0.90 -27.42 13.96 55.43 0.77 -26.64 16 21 Si 0.88 21.48 27.47 -169.99 -4.67 16.81 16 22 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.26 -6.18 6.54 56.52 0.37 -5.81 16 25 C -0.08 -0.67 9.30 -39.61 -0.37 -1.04 16 26 C -0.21 -1.72 9.04 -39.43 -0.36 -2.07 16 27 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.23 7.66 -51.93 -0.40 -0.17 16 29 H 0.06 0.25 7.66 -51.93 -0.40 -0.15 16 30 H 0.13 1.06 8.06 -52.48 -0.42 0.63 16 31 H 0.13 1.10 8.06 -52.48 -0.42 0.68 16 32 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.11 0.78 6.17 -51.93 -0.32 0.46 16 34 H 0.06 1.41 8.13 -51.93 -0.42 0.99 16 35 H 0.07 1.43 8.13 -51.93 -0.42 1.01 16 36 H 0.03 0.68 7.20 -51.93 -0.37 0.31 16 37 H 0.02 0.57 7.57 -51.93 -0.39 0.18 16 38 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 39 H 0.13 0.88 6.01 -52.49 -0.32 0.56 16 40 H 0.13 0.79 6.30 -52.48 -0.33 0.46 16 LS Contribution 342.16 15.07 5.16 5.16 Total: -1.00 -33.10 342.16 -7.86 -40.96 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: -5.47 Total: -1.71 kcal Atomic # 6 Polarization: -11.24 SS G_CDS: -2.75 Total: -13.99 kcal Atomic # 7 Polarization: -27.42 SS G_CDS: 0.77 Total: -26.64 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: -0.91 Total: -20.59 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.67 Total: 16.81 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.10 -7.86 -40.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327178301.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.487 kcal (2) G-P(sol) polarization free energy of solvation -33.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds