Wall clock time and date at job start Tue Mar 31 2020 06:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35905 * 116.99678 * 2 1 4 4 C 1.38736 * 120.05326 * 180.02562 * 3 2 1 5 5 C 1.38139 * 119.94353 * 180.02562 * 4 3 2 6 6 C 1.38266 * 120.05522 * 0.02687 * 5 4 3 7 7 C 1.50705 * 119.94231 * 179.97438 * 6 5 4 8 8 H 1.08999 * 115.55004 * 334.32157 * 7 6 5 9 9 C 1.53001 * 117.51317 * 188.62425 * 7 6 5 10 10 C 1.52993 * 117.49937 * 119.99259 * 7 6 5 11 11 H 1.08999 * 117.50004 * 359.97438 * 10 7 6 12 12 C 1.50700 * 117.49879 * 214.99880 * 10 7 6 13 13 O 1.20822 * 119.99958 * 0.02562 * 12 10 7 14 14 O 1.34234 * 120.00068 * 180.02562 * 12 10 7 15 15 C 1.45196 * 116.99938 * 179.97438 * 14 12 10 16 16 C 1.52998 * 109.47070 * 179.97438 * 15 14 12 17 17 C 1.50703 * 109.47221 * 180.02562 * 16 15 14 18 18 H 1.07998 * 119.99956 * 359.97438 * 17 16 15 19 19 C 1.37876 * 120.00171 * 180.02562 * 17 16 15 20 20 N 1.31513 * 120.00377 * 179.97438 * 19 17 16 21 21 Si 1.86810 * 119.99898 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47093 * 90.00118 * 21 19 17 23 23 H 1.48500 * 109.46823 * 210.00246 * 21 19 17 24 24 H 1.48499 * 109.46973 * 329.99936 * 21 19 17 25 25 C 1.38260 * 120.11403 * 0.23929 * 6 5 4 26 26 C 1.38151 * 120.05092 * 359.46645 * 25 6 5 27 27 H 1.08994 * 109.46973 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47016 * 299.99468 * 1 2 3 29 29 H 1.08997 * 109.47257 * 59.99647 * 1 2 3 30 30 H 1.08007 * 120.02636 * 359.97438 * 4 3 2 31 31 H 1.08005 * 119.97056 * 179.97438 * 5 4 3 32 32 H 1.09000 * 117.49307 * 145.03122 * 9 7 6 33 33 H 1.08993 * 117.50144 * 0.02562 * 9 7 6 34 34 H 1.08996 * 109.47465 * 299.99911 * 15 14 12 35 35 H 1.08999 * 109.47008 * 59.99921 * 15 14 12 36 36 H 1.08998 * 109.47592 * 300.00297 * 16 15 14 37 37 H 1.08999 * 109.47084 * 60.00195 * 16 15 14 38 38 H 0.96994 * 120.00157 * 180.02562 * 20 19 17 39 39 H 1.07993 * 119.97724 * 179.70790 * 25 6 5 40 40 H 1.08003 * 120.02631 * 180.29121 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 3.4313 1.2849 -0.0005 5 6 4.0560 2.5170 0.0000 6 6 3.3018 3.6758 0.0016 7 6 3.9860 5.0186 0.0028 8 1 4.9893 5.0347 0.4285 9 6 3.1116 6.2572 0.2081 10 6 3.7017 5.9573 -1.1714 11 1 3.0202 5.6036 -1.9450 12 6 4.8303 6.8334 -1.6509 13 8 5.9099 6.7772 -1.1113 14 8 4.6361 7.6763 -2.6774 15 6 5.7673 8.4901 -3.0852 16 6 5.3580 9.3801 -4.2604 17 6 6.5323 10.2243 -4.6841 18 1 7.4760 10.1352 -4.1666 19 6 6.4016 11.1111 -5.7317 20 7 7.4262 11.8481 -6.1012 21 14 4.7690 11.2656 -6.6264 22 1 3.9400 12.3067 -5.9674 23 1 5.0136 11.6491 -8.0400 24 1 4.0556 9.9640 -6.5829 25 6 1.9210 3.6048 0.0077 26 6 1.2915 2.3751 0.0011 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 4.0209 0.3800 -0.0005 31 1 5.1345 2.5751 0.0000 32 1 3.5397 7.0882 0.7687 33 1 2.0413 6.1011 0.3427 34 1 6.0859 9.1140 -2.2502 35 1 6.5897 7.8426 -3.3894 36 1 5.0397 8.7559 -5.0953 37 1 4.5355 10.0275 -3.9566 38 1 7.3341 12.4722 -6.8379 39 1 1.3341 4.5113 0.0138 40 1 0.2129 2.3201 0.0011 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327178301.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:30 Heat of formation + Delta-G solvation = -98.971898 kcal Electronic energy + Delta-G solvation = -21440.979506 eV Core-core repulsion = 17993.124619 eV Total energy + Delta-G solvation = -3447.854888 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.77080 -41.05669 -39.35570 -37.89427 -36.76645 -35.40620 -32.82297 -32.03532 -31.03858 -28.26714 -27.63843 -25.55532 -24.69778 -23.21341 -22.65634 -21.82041 -21.05242 -19.36847 -19.14146 -18.59983 -17.67195 -17.49856 -16.98993 -16.61773 -16.59195 -16.27710 -15.69293 -15.19050 -15.15854 -14.68372 -14.55213 -14.35759 -13.93225 -13.75972 -13.42373 -13.27474 -13.04398 -12.86261 -12.54389 -12.50421 -12.44505 -12.25294 -11.86596 -11.82305 -11.58391 -11.54274 -11.47148 -11.42397 -11.32912 -10.82226 -9.96379 -9.01956 -8.35350 -6.43890 0.31596 0.38927 1.05010 1.37669 1.39648 1.52421 1.64516 2.33793 2.39448 2.55113 2.99225 2.99451 3.50363 3.58021 3.73537 3.83897 3.97705 4.00487 4.14044 4.17426 4.19684 4.34362 4.40300 4.41995 4.55467 4.59646 4.67941 4.71850 4.77319 4.91185 5.00435 5.05489 5.10644 5.26644 5.30853 5.39360 5.48561 5.53343 5.65929 5.79288 6.14212 6.45334 6.61946 6.69721 7.21189 8.80659 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.029104 B = 0.002428 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.840597 B =11529.561930 C =11939.236641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.338 6.338 3 C 0.112 3.888 4 C -0.164 4.164 5 C -0.078 4.078 6 C -0.101 4.101 7 C -0.073 4.073 8 H 0.114 0.886 9 C -0.121 4.121 10 C -0.166 4.166 11 H 0.153 0.847 12 C 0.482 3.518 13 O -0.544 6.544 14 O -0.358 6.358 15 C 0.092 3.908 16 C -0.003 4.003 17 C -0.544 4.544 18 H 0.034 0.966 19 C 0.011 3.989 20 N -0.944 5.944 21 Si 0.956 3.044 22 H -0.262 1.262 23 H -0.280 1.280 24 H -0.245 1.245 25 C -0.076 4.076 26 C -0.206 4.206 27 H 0.116 0.884 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.136 0.864 31 H 0.135 0.865 32 H 0.105 0.895 33 H 0.146 0.854 34 H 0.058 0.942 35 H 0.055 0.945 36 H 0.035 0.965 37 H 0.036 0.964 38 H 0.271 0.729 39 H 0.152 0.848 40 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.793 -22.824 14.914 33.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.252 6.252 3 C 0.067 3.933 4 C -0.182 4.182 5 C -0.096 4.096 6 C -0.101 4.101 7 C -0.091 4.091 8 H 0.132 0.868 9 C -0.157 4.157 10 C -0.185 4.185 11 H 0.170 0.830 12 C 0.328 3.672 13 O -0.435 6.435 14 O -0.274 6.274 15 C 0.019 3.981 16 C -0.041 4.041 17 C -0.581 4.581 18 H 0.053 0.947 19 C -0.187 4.187 20 N -0.583 5.583 21 Si 0.778 3.222 22 H -0.186 1.186 23 H -0.206 1.206 24 H -0.168 1.168 25 C -0.093 4.093 26 C -0.224 4.224 27 H 0.134 0.866 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.154 0.846 31 H 0.153 0.847 32 H 0.124 0.876 33 H 0.164 0.836 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.053 0.947 37 H 0.054 0.946 38 H 0.080 0.920 39 H 0.170 0.830 40 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -19.318 -22.876 14.924 33.455 hybrid contribution 0.352 0.608 -0.640 0.950 sum -18.966 -22.268 14.285 32.552 Atomic orbital electron populations 1.23342 0.76441 1.05521 1.02348 1.86050 1.23501 1.26986 1.88649 1.19283 0.92618 0.84895 0.96486 1.20582 0.91965 0.98844 1.06830 1.20977 1.00607 0.90963 0.97010 1.19002 0.93766 0.92404 1.04961 1.21037 1.00924 0.88876 0.98310 0.86809 1.23414 1.01898 0.98224 0.92176 1.21984 0.99027 1.01991 0.95460 0.82955 1.23366 0.88992 0.78097 0.76768 1.90624 1.28550 1.67314 1.57013 1.86460 1.43069 1.49860 1.47996 1.22966 0.85809 0.91607 0.97711 1.19463 0.96804 0.94387 0.93399 1.21109 0.97486 1.22325 1.17222 0.94725 1.25978 1.01213 0.94208 0.97344 1.70040 1.33211 1.25640 1.29411 0.85582 0.78864 0.80225 0.77567 1.18639 1.20573 1.16786 1.21132 0.93436 0.98353 0.96420 1.21473 1.01251 0.91622 1.08090 0.86565 0.91493 0.91728 0.84584 0.84697 0.87644 0.83631 0.92363 0.92630 0.94685 0.94588 0.92023 0.83043 0.83028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 113.37 1.11 1.25 16 2 O -0.34 -5.53 10.50 -92.48 -0.97 -6.50 16 3 C 0.11 1.95 6.69 22.51 0.15 2.10 16 4 C -0.16 -2.98 9.99 22.37 0.22 -2.75 16 5 C -0.08 -1.43 9.73 22.25 0.22 -1.21 16 6 C -0.10 -1.79 5.61 -19.85 -0.11 -1.91 16 7 C -0.07 -1.43 5.55 -11.54 -0.06 -1.50 16 8 H 0.11 2.58 7.67 -2.39 -0.02 2.56 16 9 C -0.12 -1.94 9.56 30.60 0.29 -1.65 16 10 C -0.17 -3.72 5.94 -11.54 -0.07 -3.79 16 11 H 0.15 2.89 8.14 -2.39 -0.02 2.87 16 12 C 0.48 16.13 7.74 71.24 0.55 16.69 16 13 O -0.54 -21.35 16.01 21.98 0.35 -21.00 16 14 O -0.36 -13.52 10.22 -51.46 -0.53 -14.04 16 15 C 0.09 4.05 5.40 71.98 0.39 4.44 16 16 C 0.00 -0.15 4.42 29.85 0.13 -0.02 16 17 C -0.54 -31.78 9.66 25.60 0.25 -31.53 16 18 H 0.03 2.23 7.99 -2.91 -0.02 2.20 16 19 C 0.01 0.62 5.47 84.65 0.46 1.08 16 20 N -0.94 -58.89 13.96 21.45 0.30 -58.59 16 21 Si 0.96 43.50 27.47 68.60 1.88 45.39 16 22 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 23 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 24 H -0.24 -10.33 6.54 99.48 0.65 -9.68 16 25 C -0.08 -1.07 9.30 22.25 0.21 -0.86 16 26 C -0.21 -2.87 9.04 22.36 0.20 -2.67 16 27 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.07 0.37 7.66 -2.38 -0.02 0.35 16 29 H 0.06 0.39 7.66 -2.39 -0.02 0.38 16 30 H 0.14 2.19 8.06 -2.91 -0.02 2.17 16 31 H 0.14 2.28 8.06 -2.91 -0.02 2.25 16 32 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.15 1.34 6.17 -2.39 -0.01 1.33 16 34 H 0.06 2.59 8.13 -2.39 -0.02 2.57 16 35 H 0.06 2.51 8.13 -2.39 -0.02 2.49 16 36 H 0.03 1.64 7.20 -2.39 -0.02 1.62 16 37 H 0.04 1.65 7.57 -2.39 -0.02 1.63 16 38 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 39 H 0.15 1.35 6.01 -2.91 -0.02 1.33 16 40 H 0.15 1.31 6.30 -2.91 -0.02 1.29 16 Total: -1.00 -72.94 342.16 5.97 -66.98 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: 0.99 Total: 10.09 kcal Atomic # 6 Polarization: -26.27 SS G_CDS: 3.94 Total: -22.33 kcal Atomic # 7 Polarization: -58.89 SS G_CDS: 0.30 Total: -58.59 kcal Atomic # 8 Polarization: -40.39 SS G_CDS: -1.14 Total: -41.54 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 1.88 Total: 45.39 kcal Total: -72.94 5.97 -66.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327178301.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.995 kcal (2) G-P(sol) polarization free energy of solvation -72.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds