Wall clock time and date at job start Tue Mar 31 2020 05:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50705 * 109.46901 * 2 1 4 4 C 1.38560 * 119.79509 * 270.01777 * 3 2 1 5 5 C 1.37766 * 120.30393 * 179.69757 * 4 3 2 6 6 C 1.39772 * 119.90383 * 0.55871 * 5 4 3 7 7 C 1.47400 * 120.19769 * 179.71810 * 6 5 4 8 8 O 1.21507 * 119.99802 * 185.66047 * 7 6 5 9 9 O 1.34755 * 119.99991 * 5.39142 * 7 6 5 10 10 C 1.45200 * 116.99829 * 176.30043 * 9 7 6 11 11 C 1.52997 * 109.46915 * 184.70947 * 10 9 7 12 12 C 1.50698 * 115.55109 * 306.64141 * 11 10 9 13 13 H 1.08001 * 120.00174 * 144.81709 * 12 11 10 14 14 C 1.37878 * 120.00007 * 324.81874 * 12 11 10 15 15 N 1.31511 * 120.00198 * 350.88160 * 14 12 11 16 16 Si 1.86801 * 119.99970 * 170.88273 * 14 12 11 17 17 H 1.48502 * 109.47047 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47130 * 119.99797 * 16 14 12 19 19 H 1.48504 * 109.46719 * 239.99999 * 16 14 12 20 20 C 1.53006 * 117.49953 * 160.97272 * 11 10 9 21 21 C 1.53000 * 117.50016 * 92.31303 * 11 10 9 22 22 C 1.40197 * 119.60223 * 359.44759 * 6 5 4 23 23 O 1.35641 * 120.15106 * 180.25225 * 22 6 5 24 24 C 1.38052 * 119.79707 * 89.99859 * 3 2 1 25 25 H 1.08996 * 109.47220 * 60.00393 * 1 2 3 26 26 H 1.09001 * 109.46940 * 180.02562 * 1 2 3 27 27 H 1.08991 * 109.47303 * 300.00153 * 1 2 3 28 28 H 1.08997 * 109.47623 * 239.99616 * 2 1 3 29 29 H 1.09004 * 109.46920 * 119.99681 * 2 1 3 30 30 H 1.07999 * 119.84687 * 359.97438 * 4 3 2 31 31 H 1.08007 * 120.04919 * 180.30377 * 5 4 3 32 32 H 1.08999 * 109.47355 * 304.70802 * 10 9 7 33 33 H 1.08993 * 109.47105 * 64.70941 * 10 9 7 34 34 H 0.97000 * 120.00492 * 185.03062 * 15 14 12 35 35 H 1.08999 * 117.49460 * 359.97438 * 20 11 10 36 36 H 1.08998 * 117.49884 * 145.01599 * 20 11 10 37 37 H 1.08998 * 117.50069 * 214.97781 * 21 11 10 38 38 H 1.09002 * 117.50202 * 359.97438 * 21 11 10 39 39 H 0.96702 * 113.99620 * 90.00449 * 23 22 6 40 40 H 1.07998 * 119.95863 * 0.04311 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2614 2.0701 -1.2024 5 6 2.7146 3.3711 -1.2147 6 6 2.9559 4.0363 -0.0093 7 6 3.4468 5.4261 -0.0149 8 8 3.7532 5.9664 1.0295 9 8 3.5610 6.0957 -1.1787 10 6 3.9718 7.4862 -1.1016 11 6 3.9321 8.1079 -2.4990 12 6 4.7012 7.3670 -3.5622 13 1 4.3288 7.3361 -4.5755 14 6 5.8804 6.7285 -3.2414 15 7 6.4272 6.9123 -2.0595 16 14 6.7013 5.6025 -4.4854 17 1 5.8910 5.5649 -5.7293 18 1 8.0606 6.1140 -4.7947 19 1 6.8043 4.2328 -3.9208 20 6 3.8900 9.6346 -2.5921 21 6 2.6416 8.8125 -2.9223 22 6 2.7228 3.3756 1.2050 23 8 2.9484 4.0123 2.3813 24 6 2.2609 2.0677 1.1980 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 2.0796 1.5555 -2.1343 31 1 2.8872 3.8748 -2.1543 32 1 3.2942 8.0294 -0.4429 33 1 4.9862 7.5440 -0.7070 34 1 7.2925 6.5223 -1.8595 35 1 3.8902 10.1959 -1.6578 36 1 4.4183 10.1029 -3.4225 37 1 2.3492 8.7405 -3.9699 38 1 1.8207 8.8328 -2.2055 39 1 2.1808 4.4913 2.7227 40 1 2.0803 1.5546 2.1310 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330209260.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:37 Heat of formation + Delta-G solvation = -101.670936 kcal Electronic energy + Delta-G solvation = -23072.599798 eV Core-core repulsion = 19624.627871 eV Total energy + Delta-G solvation = -3447.971927 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.62142 -40.29599 -38.52427 -38.06595 -36.66628 -34.85121 -34.19814 -31.29713 -30.66052 -28.41210 -27.41102 -25.60643 -23.70848 -23.08539 -22.83211 -21.62865 -21.12335 -19.11490 -18.64377 -18.53399 -17.47780 -17.25506 -16.67848 -16.54884 -16.29960 -15.77377 -15.37577 -15.00366 -14.84250 -14.56174 -14.29842 -13.95598 -13.77325 -13.61410 -13.33283 -12.91412 -12.84853 -12.78904 -12.51845 -12.32090 -12.29031 -12.14779 -11.86339 -11.75161 -11.56382 -11.38049 -11.08190 -11.05301 -10.68431 -10.09736 -9.95928 -9.71385 -8.07231 -6.19629 -0.38228 0.22094 1.38607 1.42187 1.52971 1.59086 1.90400 2.40637 2.59765 3.02076 3.12048 3.54093 3.69550 3.78731 3.91764 4.16779 4.20904 4.25034 4.34191 4.41793 4.53582 4.55186 4.57652 4.74790 4.83668 4.88790 4.91220 4.99412 5.07579 5.13000 5.16626 5.24381 5.26209 5.39486 5.44473 5.50223 5.51936 5.73801 5.78550 5.81122 6.31677 6.71677 6.76891 6.95908 7.43367 8.91893 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.016130 B = 0.004899 C = 0.004372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.429324 B = 5713.686256 C = 6402.245211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.086 4.086 3 C -0.025 4.025 4 C -0.138 4.138 5 C -0.052 4.052 6 C -0.186 4.186 7 C 0.488 3.512 8 O -0.539 6.539 9 O -0.333 6.333 10 C 0.128 3.872 11 C 0.008 3.992 12 C -0.496 4.496 13 H 0.059 0.941 14 C 0.030 3.970 15 N -0.910 5.910 16 Si 0.951 3.049 17 H -0.261 1.261 18 H -0.281 1.281 19 H -0.284 1.284 20 C -0.186 4.186 21 C -0.185 4.185 22 C 0.162 3.838 23 O -0.495 6.495 24 C -0.155 4.155 25 H 0.054 0.946 26 H 0.076 0.924 27 H 0.055 0.945 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.160 0.840 31 H 0.131 0.869 32 H 0.030 0.970 33 H 0.079 0.921 34 H 0.258 0.742 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.408 0.592 40 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.559 -14.119 4.112 19.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 C -0.026 4.026 4 C -0.155 4.155 5 C -0.071 4.071 6 C -0.187 4.187 7 C 0.335 3.665 8 O -0.432 6.432 9 O -0.248 6.248 10 C 0.054 3.946 11 C 0.008 3.992 12 C -0.533 4.533 13 H 0.077 0.923 14 C -0.170 4.170 15 N -0.548 5.548 16 Si 0.777 3.223 17 H -0.184 1.184 18 H -0.207 1.207 19 H -0.210 1.210 20 C -0.224 4.224 21 C -0.222 4.222 22 C 0.117 3.883 23 O -0.308 6.308 24 C -0.173 4.173 25 H 0.073 0.927 26 H 0.095 0.905 27 H 0.074 0.926 28 H 0.109 0.891 29 H 0.108 0.892 30 H 0.177 0.823 31 H 0.149 0.851 32 H 0.049 0.951 33 H 0.097 0.903 34 H 0.068 0.932 35 H 0.098 0.902 36 H 0.102 0.898 37 H 0.106 0.894 38 H 0.104 0.896 39 H 0.268 0.732 40 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -11.774 -14.245 4.454 19.011 hybrid contribution 0.579 0.628 -0.269 0.896 sum -11.195 -13.617 4.185 18.118 Atomic orbital electron populations 1.21749 0.93407 1.02936 1.02240 1.20733 0.97017 0.89716 1.04832 1.20428 0.93105 0.97418 0.91602 1.21335 1.01012 0.93433 0.99765 1.21530 0.93515 0.95419 0.96615 1.19829 1.11107 0.91456 0.96328 1.21643 0.74922 0.87933 0.82017 1.90738 1.47855 1.70546 1.34085 1.86536 1.77842 1.27748 1.32648 1.22509 0.99330 0.75727 0.96996 1.19027 0.96739 0.90805 0.92675 1.20697 1.06585 1.31688 0.94317 0.92263 1.25625 0.97676 0.96902 0.96756 1.69958 1.16675 1.45621 1.22543 0.85606 0.78301 0.78842 0.79586 1.18444 1.20687 1.20956 1.22976 1.02187 0.95654 1.01593 1.22979 0.91262 1.06706 1.01238 1.18703 0.94202 0.91821 0.83612 1.84715 1.41970 1.69592 1.34505 1.21453 1.02402 0.93034 1.00387 0.92678 0.90523 0.92635 0.89104 0.89193 0.82259 0.85125 0.95149 0.90332 0.93230 0.90222 0.89767 0.89396 0.89564 0.73246 0.82011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.89 71.98 0.71 -0.82 16 2 C -0.09 -1.04 6.05 29.85 0.18 -0.86 16 3 C -0.03 -0.50 5.14 -19.83 -0.10 -0.60 16 4 C -0.14 -3.22 9.67 22.23 0.22 -3.00 16 5 C -0.05 -1.70 9.61 22.53 0.22 -1.49 16 6 C -0.19 -6.99 5.89 -20.02 -0.12 -7.11 16 7 C 0.49 23.05 7.87 70.23 0.55 23.60 16 8 O -0.54 -27.48 14.95 26.79 0.40 -27.08 16 9 O -0.33 -16.97 9.11 -56.66 -0.52 -17.49 16 10 C 0.13 6.70 4.52 71.98 0.33 7.02 16 11 C 0.01 0.40 2.14 -52.93 -0.11 0.29 16 12 C -0.50 -27.21 8.77 25.60 0.22 -26.98 16 13 H 0.06 3.20 7.83 -2.91 -0.02 3.17 16 14 C 0.03 1.67 5.19 84.66 0.44 2.11 16 15 N -0.91 -53.25 10.70 21.45 0.23 -53.02 16 16 Si 0.95 43.74 29.55 68.60 2.03 45.77 16 17 H -0.26 -11.39 7.11 99.48 0.71 -10.69 16 18 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 19 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 20 C -0.19 -8.29 9.96 30.62 0.30 -7.98 16 21 C -0.18 -7.82 9.92 30.62 0.30 -7.52 16 22 C 0.16 5.10 6.72 22.86 0.15 5.25 16 23 O -0.49 -15.78 11.60 -68.70 -0.80 -16.58 16 24 C -0.15 -3.51 9.62 22.34 0.21 -3.29 16 25 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.09 0.92 8.08 -2.39 -0.02 0.90 16 29 H 0.09 0.89 8.08 -2.38 -0.02 0.87 16 30 H 0.16 2.74 8.06 -2.91 -0.02 2.72 16 31 H 0.13 4.60 7.62 -2.91 -0.02 4.57 16 32 H 0.03 1.50 8.03 -2.39 -0.02 1.48 16 33 H 0.08 4.66 6.04 -2.39 -0.01 4.64 16 34 H 0.26 14.65 8.32 -92.71 -0.77 13.88 16 35 H 0.08 3.30 8.14 -2.39 -0.02 3.28 16 36 H 0.08 3.70 8.14 -2.39 -0.02 3.68 16 37 H 0.09 3.54 8.14 -2.39 -0.02 3.52 16 38 H 0.09 3.32 8.14 -2.39 -0.02 3.30 16 39 H 0.41 9.36 9.06 -74.06 -0.67 8.69 16 40 H 0.16 2.70 8.06 -2.91 -0.02 2.68 16 Total: -1.00 -70.85 344.36 5.23 -65.61 By element: Atomic # 1 Polarization: 23.79 SS G_CDS: 0.38 Total: 24.17 kcal Atomic # 6 Polarization: -24.90 SS G_CDS: 3.51 Total: -21.39 kcal Atomic # 7 Polarization: -53.25 SS G_CDS: 0.23 Total: -53.02 kcal Atomic # 8 Polarization: -60.24 SS G_CDS: -0.91 Total: -61.15 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -70.85 5.23 -65.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330209260.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.059 kcal (2) G-P(sol) polarization free energy of solvation -70.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds