Wall clock time and date at job start Tue Mar 31 2020 05:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52996 * 109.46990 * 2 1 4 4 C 1.50700 * 109.46943 * 240.00294 * 2 1 3 5 5 H 1.08004 * 119.99619 * 240.00106 * 4 2 1 6 6 C 1.37874 * 120.00185 * 59.99639 * 4 2 1 7 7 N 1.31517 * 119.99802 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00130 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.46806 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46765 * 120.00080 * 8 6 4 11 11 H 1.48493 * 109.47341 * 240.00664 * 8 6 4 12 12 C 1.53005 * 109.46789 * 120.00342 * 2 1 3 13 13 N 1.46500 * 109.47165 * 299.99678 * 12 2 1 14 14 N 1.28728 * 125.33927 * 270.00698 * 13 12 2 15 15 N 1.28987 * 108.94390 * 179.72613 * 14 13 12 16 16 C 1.34053 * 107.26518 * 0.42725 * 15 14 13 17 17 C 1.48456 * 126.67701 * 179.83490 * 16 15 14 18 18 C 1.39309 * 120.09312 * 179.41193 * 17 16 15 19 19 C 1.37983 * 119.90387 * 179.77009 * 18 17 16 20 20 C 1.38545 * 120.09450 * 0.51185 * 19 18 17 21 21 F 1.35104 * 119.91050 * 179.72642 * 20 19 18 22 22 C 1.38541 * 120.18087 * 359.73841 * 20 19 18 23 23 C 1.37981 * 120.09610 * 0.02562 * 22 20 19 24 24 N 1.28867 * 125.33921 * 90.00234 * 13 12 2 25 25 H 1.09000 * 109.46664 * 299.99506 * 1 2 3 26 26 H 1.08998 * 109.47219 * 59.99595 * 1 2 3 27 27 H 1.09000 * 109.46913 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47160 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.47470 * 300.00251 * 3 2 1 30 30 H 1.09009 * 109.47022 * 60.00066 * 3 2 1 31 31 H 0.97005 * 119.99712 * 179.97438 * 7 6 4 32 32 H 1.09006 * 109.46604 * 180.02562 * 12 2 1 33 33 H 1.08996 * 109.46931 * 60.00151 * 12 2 1 34 34 H 1.07998 * 120.04782 * 0.02841 * 18 17 16 35 35 H 1.08006 * 119.95132 * 180.23306 * 19 18 17 36 36 H 1.08007 * 119.95480 * 179.97438 * 22 20 19 37 37 H 1.08000 * 120.04565 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8303 -2.6033 8 14 2.3225 -1.1194 -4.0080 9 1 3.1474 -2.2862 -3.6039 10 1 1.1677 -1.5865 -4.8165 11 1 3.1472 -0.1857 -4.8161 12 6 2.0400 -0.7214 1.2493 13 7 1.5517 -0.0308 2.4455 14 7 2.1609 0.9265 3.0534 15 7 1.4485 1.3035 4.0604 16 6 0.3500 0.5354 4.0804 17 6 -0.7604 0.6015 5.0635 18 6 -1.8488 -0.2603 4.9469 19 6 -2.8765 -0.1987 5.8656 20 6 -2.8321 0.7256 6.8967 21 9 -3.8430 0.7863 7.7909 22 6 -1.7540 1.5879 7.0132 23 6 -0.7199 1.5297 6.1016 24 7 0.4449 -0.2863 3.0541 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6767 1.9563 0.8901 31 1 0.7094 1.1619 -3.4844 32 1 3.1301 -0.7209 1.2495 33 1 1.6767 -1.7490 1.2491 34 1 -1.8861 -0.9783 4.1411 35 1 -3.7188 -0.8690 5.7781 36 1 -1.7234 2.3073 7.8182 37 1 0.1204 2.2020 6.1934 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330231669.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:31 Heat of formation + Delta-G solvation = 100.920630 kcal Electronic energy + Delta-G solvation = -22362.386193 eV Core-core repulsion = 18864.324493 eV Total energy + Delta-G solvation = -3498.061700 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.124 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.07527 -43.84408 -39.06904 -36.76659 -33.83997 -33.09991 -31.54842 -31.29851 -29.97705 -26.89336 -25.87773 -25.37353 -24.10507 -23.49925 -22.08675 -21.48929 -19.36186 -17.90389 -17.20771 -16.94037 -16.31339 -15.99560 -15.75145 -15.67489 -14.81013 -14.41983 -13.74555 -13.62883 -13.42557 -13.34073 -13.14141 -12.71272 -12.58187 -12.48113 -11.65601 -11.49878 -11.42387 -11.21006 -10.96128 -10.87881 -10.69450 -10.58562 -10.53765 -10.32751 -10.29659 -9.75990 -9.51546 -9.30919 -9.01645 -8.55136 -8.45577 -6.18375 -4.32360 0.64708 1.07171 1.79293 2.52083 2.56467 3.17667 3.26984 3.29065 3.60362 3.93448 4.06793 4.25708 4.43269 4.68790 4.76084 5.08584 5.10480 5.22198 5.45091 5.63418 5.72217 5.78108 5.85079 5.93363 5.94982 6.08822 6.24136 6.33802 6.49848 6.64744 6.70997 6.72908 6.83804 6.90407 7.19239 7.37846 7.52681 7.83236 7.92393 8.14681 8.66945 8.80392 9.34909 10.83048 Molecular weight = 290.12amu Principal moments of inertia in cm(-1) A = 0.033243 B = 0.003352 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.086913 B = 8351.144279 C = 8746.423805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.059 3.941 3 C -0.134 4.134 4 C -0.515 4.515 5 H 0.062 0.938 6 C 0.071 3.929 7 N -0.879 5.879 8 Si 0.899 3.101 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.283 1.283 12 C 0.128 3.872 13 N -0.101 5.101 14 N -0.058 5.058 15 N -0.293 5.293 16 C 0.178 3.822 17 C -0.005 4.005 18 C -0.056 4.056 19 C -0.155 4.155 20 C 0.105 3.895 21 F -0.140 7.140 22 C -0.155 4.155 23 C -0.055 4.055 24 N -0.290 5.290 25 H 0.009 0.991 26 H 0.088 0.912 27 H 0.031 0.969 28 H 0.033 0.967 29 H 0.089 0.911 30 H 0.008 0.992 31 H 0.263 0.737 32 H 0.107 0.893 33 H 0.105 0.895 34 H 0.145 0.855 35 H 0.141 0.859 36 H 0.140 0.860 37 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.716 -1.384 14.240 15.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.057 3.943 3 C -0.192 4.192 4 C -0.553 4.553 5 H 0.081 0.919 6 C -0.132 4.132 7 N -0.516 5.516 8 Si 0.727 3.273 9 H -0.196 1.196 10 H -0.209 1.209 11 H -0.209 1.209 12 C 0.010 3.990 13 N -0.014 5.014 14 N -0.050 5.050 15 N -0.163 5.163 16 C -0.101 4.101 17 C -0.008 4.008 18 C -0.076 4.076 19 C -0.174 4.174 20 C 0.085 3.915 21 F -0.119 7.119 22 C -0.174 4.174 23 C -0.075 4.075 24 N -0.141 5.141 25 H 0.028 0.972 26 H 0.106 0.894 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.108 0.892 30 H 0.027 0.973 31 H 0.073 0.927 32 H 0.125 0.875 33 H 0.123 0.877 34 H 0.162 0.838 35 H 0.158 0.842 36 H 0.158 0.842 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -4.176 -1.131 13.770 14.434 hybrid contribution -0.310 -0.538 -0.616 0.875 sum -4.486 -1.669 13.154 13.998 Atomic orbital electron populations 1.21838 0.96805 0.99618 1.00656 1.18544 0.93732 0.93294 0.88714 1.21863 0.98900 0.97669 1.00736 1.20833 1.32665 1.12589 0.89254 0.91936 1.24878 0.94539 0.94802 0.99019 1.69830 1.35837 1.22374 1.23583 0.86421 0.78676 0.79623 0.82608 1.19641 1.20897 1.20879 1.23203 1.00511 0.96569 0.78708 1.50525 1.09357 1.20989 1.20517 1.78890 1.20917 1.03014 1.02224 1.75911 1.03750 1.22927 1.13751 1.23372 0.96449 0.94477 0.95803 1.17317 0.91480 0.98411 0.93589 1.21110 0.91174 0.97380 0.97956 1.21059 1.00928 1.00223 0.95144 1.17851 0.86325 0.97994 0.89367 1.91501 1.58379 1.95688 1.66291 1.21046 0.93743 1.00877 1.01761 1.21063 0.98108 0.96516 0.91808 1.74850 1.06507 1.24944 1.07847 0.97240 0.89351 0.94972 0.94828 0.89242 0.97272 0.92691 0.87531 0.87726 0.83769 0.84159 0.84168 0.83697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.01 7.95 37.16 0.30 -2.71 16 2 C 0.06 1.32 0.57 -155.65 -0.09 1.23 16 3 C -0.13 -3.10 7.95 37.16 0.30 -2.81 16 4 C -0.51 -12.44 8.01 -34.44 -0.28 -12.71 16 5 H 0.06 1.46 7.74 -52.48 -0.41 1.05 16 6 C 0.07 1.76 5.15 -17.82 -0.09 1.67 16 7 N -0.88 -22.82 9.35 55.43 0.52 -22.31 16 8 Si 0.90 19.57 29.54 -169.99 -5.02 14.55 16 9 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 10 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 11 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 12 C 0.13 2.41 5.43 -4.04 -0.02 2.39 16 13 N -0.10 -1.92 3.11 -10.63 -0.03 -1.96 16 14 N -0.06 -1.15 12.03 60.35 0.73 -0.42 16 15 N -0.29 -5.45 12.23 32.16 0.39 -5.06 16 16 C 0.18 3.08 7.94 -156.30 -1.24 1.84 16 17 C 0.00 -0.06 5.88 -104.89 -0.62 -0.68 16 18 C -0.06 -0.68 9.70 -39.28 -0.38 -1.06 16 19 C -0.15 -1.61 10.01 -39.56 -0.40 -2.01 16 20 C 0.10 1.12 7.30 -39.36 -0.29 0.83 16 21 F -0.14 -1.53 17.26 2.25 0.04 -1.49 16 22 C -0.16 -1.57 10.01 -39.56 -0.40 -1.97 16 23 C -0.05 -0.64 9.70 -39.27 -0.38 -1.02 16 24 N -0.29 -5.35 10.65 32.17 0.34 -5.00 16 25 H 0.01 0.20 6.78 -51.93 -0.35 -0.16 16 26 H 0.09 2.24 6.07 -51.93 -0.32 1.93 16 27 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.09 2.29 6.07 -51.93 -0.32 1.97 16 30 H 0.01 0.19 6.78 -51.92 -0.35 -0.16 16 31 H 0.26 6.57 8.31 -40.82 -0.34 6.23 16 32 H 0.11 1.85 8.14 -51.93 -0.42 1.42 16 33 H 0.10 1.81 8.14 -51.93 -0.42 1.39 16 34 H 0.14 1.71 7.88 -52.49 -0.41 1.29 16 35 H 0.14 1.15 8.06 -52.48 -0.42 0.73 16 36 H 0.14 1.08 8.06 -52.48 -0.42 0.66 16 37 H 0.15 1.60 7.89 -52.49 -0.41 1.19 16 LS Contribution 317.30 15.07 4.78 4.78 Total: -1.00 -26.73 317.30 -6.08 -32.81 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: -4.24 Total: 1.11 kcal Atomic # 6 Polarization: -13.43 SS G_CDS: -3.59 Total: -17.02 kcal Atomic # 7 Polarization: -36.69 SS G_CDS: 1.95 Total: -34.75 kcal Atomic # 9 Polarization: -1.53 SS G_CDS: 0.04 Total: -1.49 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.02 Total: 14.55 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -26.73 -6.08 -32.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330231669.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.734 kcal (2) G-P(sol) polarization free energy of solvation -26.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds