Wall clock time and date at job start Tue Mar 31 2020 05:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52996 * 109.46990 * 2 1 4 4 C 1.50700 * 109.46943 * 240.00294 * 2 1 3 5 5 H 1.08004 * 119.99619 * 240.00106 * 4 2 1 6 6 C 1.37874 * 120.00185 * 59.99639 * 4 2 1 7 7 N 1.31517 * 119.99802 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00130 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.46806 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46765 * 120.00080 * 8 6 4 11 11 H 1.48493 * 109.47341 * 240.00664 * 8 6 4 12 12 C 1.53005 * 109.46789 * 120.00342 * 2 1 3 13 13 N 1.46500 * 109.47165 * 299.99678 * 12 2 1 14 14 N 1.28728 * 125.33927 * 270.00698 * 13 12 2 15 15 N 1.28987 * 108.94390 * 179.72613 * 14 13 12 16 16 C 1.34053 * 107.26518 * 0.42725 * 15 14 13 17 17 C 1.48456 * 126.67701 * 179.83490 * 16 15 14 18 18 C 1.39309 * 120.09312 * 179.41193 * 17 16 15 19 19 C 1.37983 * 119.90387 * 179.77009 * 18 17 16 20 20 C 1.38545 * 120.09450 * 0.51185 * 19 18 17 21 21 F 1.35104 * 119.91050 * 179.72642 * 20 19 18 22 22 C 1.38541 * 120.18087 * 359.73841 * 20 19 18 23 23 C 1.37981 * 120.09610 * 0.02562 * 22 20 19 24 24 N 1.28867 * 125.33921 * 90.00234 * 13 12 2 25 25 H 1.09000 * 109.46664 * 299.99506 * 1 2 3 26 26 H 1.08998 * 109.47219 * 59.99595 * 1 2 3 27 27 H 1.09000 * 109.46913 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47160 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.47470 * 300.00251 * 3 2 1 30 30 H 1.09009 * 109.47022 * 60.00066 * 3 2 1 31 31 H 0.97005 * 119.99712 * 179.97438 * 7 6 4 32 32 H 1.09006 * 109.46604 * 180.02562 * 12 2 1 33 33 H 1.08996 * 109.46931 * 60.00151 * 12 2 1 34 34 H 1.07998 * 120.04782 * 0.02841 * 18 17 16 35 35 H 1.08006 * 119.95132 * 180.23306 * 19 18 17 36 36 H 1.08007 * 119.95480 * 179.97438 * 22 20 19 37 37 H 1.08000 * 120.04565 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8303 -2.6033 8 14 2.3225 -1.1194 -4.0080 9 1 3.1474 -2.2862 -3.6039 10 1 1.1677 -1.5865 -4.8165 11 1 3.1472 -0.1857 -4.8161 12 6 2.0400 -0.7214 1.2493 13 7 1.5517 -0.0308 2.4455 14 7 2.1609 0.9265 3.0534 15 7 1.4485 1.3035 4.0604 16 6 0.3500 0.5354 4.0804 17 6 -0.7604 0.6015 5.0635 18 6 -1.8488 -0.2603 4.9469 19 6 -2.8765 -0.1987 5.8656 20 6 -2.8321 0.7256 6.8967 21 9 -3.8430 0.7863 7.7909 22 6 -1.7540 1.5879 7.0132 23 6 -0.7199 1.5297 6.1016 24 7 0.4449 -0.2863 3.0541 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6767 1.9563 0.8901 31 1 0.7094 1.1619 -3.4844 32 1 3.1301 -0.7209 1.2495 33 1 1.6767 -1.7490 1.2491 34 1 -1.8861 -0.9783 4.1411 35 1 -3.7188 -0.8690 5.7781 36 1 -1.7234 2.3073 7.8182 37 1 0.1204 2.2020 6.1934 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330231669.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:31 Heat of formation + Delta-G solvation = 88.326395 kcal Electronic energy + Delta-G solvation = -22362.932320 eV Core-core repulsion = 18864.324493 eV Total energy + Delta-G solvation = -3498.607827 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.124 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.93425 -45.26056 -39.99372 -38.44861 -35.39753 -34.42819 -33.21621 -32.21032 -31.16255 -28.42675 -27.73504 -27.25379 -25.29941 -24.63751 -23.32507 -22.60903 -21.06526 -18.84923 -18.69532 -18.17159 -17.73995 -17.29282 -16.96212 -16.62993 -16.55575 -15.37359 -15.08415 -15.06369 -14.74209 -14.55383 -14.36654 -14.15496 -13.73868 -13.69390 -13.31086 -13.23985 -12.96795 -12.68858 -12.61280 -12.36280 -12.28384 -12.16857 -12.12315 -11.86160 -11.75920 -11.55854 -11.10074 -10.84811 -10.45021 -10.16008 -9.51540 -8.06822 -6.25840 -0.35853 0.21902 0.34185 1.09774 1.34016 1.45555 1.50524 1.58841 2.44812 2.63279 2.73416 3.18787 3.19437 3.24987 3.78805 3.89293 4.02858 4.11729 4.22444 4.38477 4.39313 4.44251 4.68470 4.74159 4.87179 4.91304 4.94137 4.97887 5.05166 5.06512 5.12753 5.24143 5.37937 5.40113 5.49036 5.61530 5.78716 5.92364 6.05487 6.26833 6.80052 7.37790 7.44047 8.93555 Molecular weight = 290.12amu Principal moments of inertia in cm(-1) A = 0.033243 B = 0.003352 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.086913 B = 8351.144279 C = 8746.423805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.055 3.945 3 C -0.121 4.121 4 C -0.522 4.522 5 H 0.072 0.928 6 C 0.025 3.975 7 N -0.906 5.906 8 Si 0.956 3.044 9 H -0.262 1.262 10 H -0.286 1.286 11 H -0.287 1.287 12 C 0.133 3.867 13 N -0.106 5.106 14 N -0.075 5.075 15 N -0.303 5.303 16 C 0.186 3.814 17 C -0.034 4.034 18 C -0.058 4.058 19 C -0.149 4.149 20 C 0.106 3.894 21 F -0.139 7.139 22 C -0.146 4.146 23 C -0.054 4.054 24 N -0.303 5.303 25 H 0.007 0.993 26 H 0.060 0.940 27 H 0.035 0.965 28 H 0.035 0.965 29 H 0.062 0.938 30 H 0.005 0.995 31 H 0.260 0.740 32 H 0.122 0.878 33 H 0.122 0.878 34 H 0.143 0.857 35 H 0.164 0.836 36 H 0.168 0.832 37 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.107 -2.234 15.569 16.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.053 3.947 3 C -0.179 4.179 4 C -0.561 4.561 5 H 0.090 0.910 6 C -0.175 4.175 7 N -0.544 5.544 8 Si 0.783 3.217 9 H -0.185 1.185 10 H -0.212 1.212 11 H -0.213 1.213 12 C 0.015 3.985 13 N -0.019 5.019 14 N -0.067 5.067 15 N -0.173 5.173 16 C -0.094 4.094 17 C -0.037 4.037 18 C -0.078 4.078 19 C -0.167 4.167 20 C 0.086 3.914 21 F -0.117 7.117 22 C -0.165 4.165 23 C -0.074 4.074 24 N -0.154 5.154 25 H 0.026 0.974 26 H 0.079 0.921 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.081 0.919 30 H 0.024 0.976 31 H 0.070 0.930 32 H 0.140 0.860 33 H 0.140 0.860 34 H 0.161 0.839 35 H 0.182 0.818 36 H 0.185 0.815 37 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -4.562 -1.989 15.110 15.908 hybrid contribution -0.288 -0.230 -0.908 0.980 sum -4.850 -2.219 14.202 15.170 Atomic orbital electron populations 1.21656 0.97457 0.99299 0.99103 1.18485 0.93172 0.92897 0.90174 1.21699 0.98854 0.98221 0.99125 1.21178 1.32267 1.12733 0.89878 0.90984 1.25579 0.94866 0.95407 1.01616 1.69975 1.36993 1.23628 1.23783 0.85525 0.77940 0.78762 0.79499 1.18541 1.21247 1.21342 1.23054 1.01428 0.96691 0.77292 1.50467 1.09663 1.21112 1.20679 1.78848 1.21591 1.03424 1.02806 1.75881 1.04365 1.23356 1.13733 1.23980 0.96565 0.93187 0.95627 1.17494 0.91472 1.00533 0.94204 1.21133 0.91159 0.97118 0.98414 1.21254 1.00923 1.00251 0.94277 1.17992 0.86328 0.97870 0.89199 1.91514 1.58333 1.95646 1.66214 1.21274 0.92674 1.00845 1.01693 1.21136 0.98756 0.96026 0.91486 1.74840 1.06420 1.25683 1.08468 0.97389 0.92129 0.94556 0.94544 0.91933 0.97618 0.93045 0.85961 0.86027 0.83886 0.81827 0.81486 0.83336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.40 7.95 71.99 0.57 -4.82 16 2 C 0.05 2.43 0.57 -52.92 -0.03 2.40 16 3 C -0.12 -5.66 7.95 71.98 0.57 -5.09 16 4 C -0.52 -24.81 8.01 25.60 0.21 -24.61 16 5 H 0.07 3.23 7.74 -2.91 -0.02 3.21 16 6 C 0.03 1.26 5.15 84.65 0.44 1.70 16 7 N -0.91 -47.74 9.35 21.45 0.20 -47.54 16 8 Si 0.96 39.85 29.54 68.60 2.03 41.88 16 9 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 10 H -0.29 -12.00 7.11 99.48 0.71 -11.29 16 11 H -0.29 -12.08 7.11 99.48 0.71 -11.38 16 12 C 0.13 4.87 5.43 86.38 0.47 5.34 16 13 N -0.11 -3.99 3.11 -187.54 -0.58 -4.57 16 14 N -0.07 -2.91 12.03 37.02 0.45 -2.46 16 15 N -0.30 -11.18 12.23 -52.18 -0.64 -11.81 16 16 C 0.19 6.33 7.94 137.38 1.09 7.42 16 17 C -0.03 -0.90 5.88 -20.04 -0.12 -1.02 16 18 C -0.06 -1.32 9.70 22.47 0.22 -1.11 16 19 C -0.15 -2.74 10.01 22.28 0.22 -2.51 16 20 C 0.11 1.98 7.30 22.42 0.16 2.15 16 21 F -0.14 -2.62 17.26 44.97 0.78 -1.85 16 22 C -0.15 -2.57 10.01 22.28 0.22 -2.35 16 23 C -0.05 -1.18 9.70 22.47 0.22 -0.96 16 24 N -0.30 -11.01 10.65 -52.13 -0.56 -11.57 16 25 H 0.01 0.33 6.78 -2.39 -0.02 0.31 16 26 H 0.06 3.13 6.07 -2.39 -0.01 3.12 16 27 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.06 3.26 6.07 -2.39 -0.01 3.25 16 30 H 0.00 0.23 6.78 -2.38 -0.02 0.21 16 31 H 0.26 13.26 8.31 -92.70 -0.77 12.49 16 32 H 0.12 4.05 8.14 -2.38 -0.02 4.03 16 33 H 0.12 4.00 8.14 -2.39 -0.02 3.98 16 34 H 0.14 3.25 7.88 -2.91 -0.02 3.23 16 35 H 0.16 2.20 8.06 -2.91 -0.02 2.18 16 36 H 0.17 2.00 8.06 -2.91 -0.02 1.98 16 37 H 0.15 3.09 7.89 -2.91 -0.02 3.07 16 Total: -1.00 -56.53 317.30 7.01 -49.52 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: 1.10 Total: 11.87 kcal Atomic # 6 Polarization: -27.72 SS G_CDS: 4.24 Total: -23.48 kcal Atomic # 7 Polarization: -76.82 SS G_CDS: -1.13 Total: -77.95 kcal Atomic # 9 Polarization: -2.62 SS G_CDS: 0.78 Total: -1.85 kcal Atomic # 14 Polarization: 39.85 SS G_CDS: 2.03 Total: 41.88 kcal Total: -56.53 7.01 -49.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330231669.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.847 kcal (2) G-P(sol) polarization free energy of solvation -56.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds