Wall clock time and date at job start Tue Mar 31 2020 06:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46900 * 110.99658 * 2 1 4 4 C 1.50700 * 109.47412 * 291.93776 * 3 2 1 5 5 N 1.30839 * 125.95771 * 95.60963 * 4 3 2 6 6 C 1.33241 * 109.82482 * 179.97438 * 5 4 3 7 7 N 1.30713 * 108.94904 * 359.97438 * 6 5 4 8 8 N 1.34429 * 125.96144 * 275.59013 * 4 3 2 9 9 C 1.46493 * 126.82414 * 0.27978 * 8 4 3 10 10 C 1.53004 * 109.47097 * 264.39161 * 9 8 4 11 11 F 1.39902 * 109.47163 * 66.31504 * 10 9 8 12 12 F 1.39897 * 109.47042 * 186.31174 * 10 9 8 13 13 C 1.46903 * 111.00114 * 123.95338 * 2 1 3 14 14 C 1.53004 * 109.46559 * 72.07441 * 13 2 1 15 15 H 1.08998 * 109.47305 * 54.55249 * 14 13 2 16 16 O 1.42897 * 109.47452 * 294.54280 * 14 13 2 17 17 C 1.50702 * 109.46763 * 174.54592 * 14 13 2 18 18 H 1.08006 * 119.99885 * 359.97438 * 17 14 13 19 19 C 1.37877 * 120.00371 * 180.02562 * 17 14 13 20 20 N 1.31516 * 119.99701 * 359.97438 * 19 17 14 21 21 Si 1.86794 * 120.00322 * 179.97438 * 19 17 14 22 22 H 1.48507 * 109.47232 * 59.99840 * 21 19 17 23 23 H 1.48501 * 109.47272 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47208 * 299.99906 * 21 19 17 25 25 H 1.08996 * 109.47400 * 52.46297 * 1 2 3 26 26 H 1.09002 * 109.46999 * 172.46528 * 1 2 3 27 27 H 1.09004 * 109.46808 * 292.46178 * 1 2 3 28 28 H 1.08998 * 109.46578 * 171.93961 * 3 2 1 29 29 H 1.09000 * 109.47264 * 51.94483 * 3 2 1 30 30 H 1.07997 * 125.52121 * 179.97438 * 6 5 4 31 31 H 1.08998 * 109.47255 * 24.39214 * 9 8 4 32 32 H 1.08997 * 109.47230 * 144.39229 * 9 8 4 33 33 H 1.09002 * 109.47314 * 306.31340 * 10 9 8 34 34 H 1.08996 * 109.47104 * 192.07364 * 13 2 1 35 35 H 1.08998 * 109.46814 * 312.07637 * 13 2 1 36 36 H 0.96694 * 114.00071 * 300.00483 * 16 14 13 37 37 H 0.97002 * 120.00118 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6798 2.0307 -1.3179 5 7 0.6532 2.8036 -1.5640 6 6 0.6882 3.2113 -2.8320 7 7 1.7425 2.7016 -3.4128 8 7 2.4042 1.9275 -2.4456 9 6 3.6360 1.1566 -2.6305 10 6 4.8455 2.0734 -2.4364 11 9 4.9010 2.4964 -1.1040 12 9 6.0156 1.3750 -2.7530 13 6 1.9955 -0.7660 1.1376 14 6 1.7637 -2.2592 0.8978 15 1 2.1938 -2.5441 -0.0623 16 8 0.3603 -2.5283 0.8899 17 6 2.4210 -3.0525 1.9978 18 1 2.9513 -2.5426 2.7885 19 6 2.3462 -4.4292 1.9942 20 7 1.7008 -5.0502 1.0311 21 14 3.1615 -5.4125 3.3572 22 1 2.5758 -5.0248 4.6657 23 1 2.9365 -6.8618 3.1247 24 1 4.6198 -5.1325 3.3653 25 1 -0.3634 0.6261 -0.8149 26 1 -0.3633 -1.0188 -0.1348 27 1 -0.3633 0.3927 0.9497 28 1 3.0755 1.3460 0.1441 29 1 1.5342 1.9377 0.8092 30 1 -0.0370 3.8579 -3.3034 31 1 3.6719 0.3483 -1.9001 32 1 3.6552 0.7380 -3.6367 33 1 4.7523 2.9411 -3.0895 34 1 3.0638 -0.5760 1.2403 35 1 1.4828 -0.4605 2.0497 36 1 -0.0889 -2.2986 1.7148 37 1 1.6479 -6.0187 1.0287 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001334225379.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:35 Heat of formation + Delta-G solvation = -73.517586 kcal Electronic energy + Delta-G solvation = -23821.043379 eV Core-core repulsion = 19884.648245 eV Total energy + Delta-G solvation = -3936.395133 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.130 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.13488 -48.15519 -43.21142 -39.17480 -36.71149 -35.70290 -34.21500 -32.77637 -30.68851 -30.30234 -28.46046 -27.21352 -25.10477 -24.18979 -22.87774 -22.07472 -21.35878 -19.03521 -18.93722 -18.55741 -18.21236 -17.31109 -16.69846 -16.67146 -16.59100 -16.29930 -15.82561 -15.51994 -15.41558 -14.97833 -14.75665 -14.50900 -14.43675 -14.24349 -13.96969 -13.68933 -13.29452 -13.10795 -12.87559 -12.76452 -12.70351 -12.53202 -12.42696 -12.18537 -11.90622 -11.14688 -11.03284 -10.88421 -10.70770 -10.64965 -10.06515 -9.25135 -8.09528 -6.34814 0.39424 1.02975 1.44793 1.45243 1.53219 1.84061 2.41554 2.56362 2.87115 3.08100 3.17139 3.19192 3.33341 3.55224 3.68893 3.80964 4.14502 4.24907 4.28898 4.33087 4.45490 4.48476 4.51954 4.74650 4.82247 5.04919 5.16204 5.35806 5.39668 5.57382 5.67532 5.74345 6.01030 6.06398 6.22278 6.78074 7.00493 7.38203 7.59595 8.94366 Molecular weight = 290.13amu Principal moments of inertia in cm(-1) A = 0.017890 B = 0.004453 C = 0.003842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.745584 B = 6286.976657 C = 7285.967065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.541 5.541 3 C 0.123 3.877 4 C 0.305 3.695 5 N -0.560 5.560 6 C 0.203 3.797 7 N -0.337 5.337 8 N -0.374 5.374 9 C 0.079 3.921 10 C 0.260 3.740 11 F -0.210 7.210 12 F -0.197 7.197 13 C 0.050 3.950 14 C 0.240 3.760 15 H 0.024 0.976 16 O -0.572 6.572 17 C -0.584 4.584 18 H 0.062 0.938 19 C 0.029 3.971 20 N -0.899 5.899 21 Si 0.956 3.044 22 H -0.268 1.268 23 H -0.289 1.289 24 H -0.268 1.268 25 H 0.055 0.945 26 H 0.082 0.918 27 H 0.029 0.971 28 H 0.107 0.893 29 H 0.078 0.922 30 H 0.253 0.747 31 H 0.124 0.876 32 H 0.145 0.855 33 H 0.139 0.861 34 H 0.079 0.921 35 H 0.038 0.962 36 H 0.352 0.648 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.176 16.389 -6.108 17.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.266 5.266 3 C -0.008 4.008 4 C 0.027 3.973 5 N -0.288 5.288 6 C -0.099 4.099 7 N -0.164 5.164 8 N -0.164 5.164 9 C -0.045 4.045 10 C 0.205 3.795 11 F -0.191 7.191 12 F -0.178 7.178 13 C -0.077 4.077 14 C 0.182 3.818 15 H 0.042 0.958 16 O -0.375 6.375 17 C -0.623 4.623 18 H 0.080 0.920 19 C -0.174 4.174 20 N -0.536 5.536 21 Si 0.781 3.219 22 H -0.193 1.193 23 H -0.214 1.214 24 H -0.193 1.193 25 H 0.074 0.926 26 H 0.100 0.900 27 H 0.048 0.952 28 H 0.125 0.875 29 H 0.096 0.904 30 H 0.269 0.731 31 H 0.142 0.858 32 H 0.163 0.837 33 H 0.156 0.844 34 H 0.097 0.903 35 H 0.056 0.944 36 H 0.197 0.803 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.471 15.967 -7.748 18.084 hybrid contribution 0.163 -0.400 1.933 1.981 sum 3.634 15.567 -5.814 17.010 Atomic orbital electron populations 1.22577 0.86333 1.03442 0.99730 1.61956 1.09404 1.10487 1.44750 1.20706 1.02112 0.89269 0.88663 1.24327 0.88138 0.93752 0.91034 1.70571 1.22249 1.17789 1.18206 1.26709 0.95953 0.98582 0.88660 1.78000 1.11396 1.13295 1.13714 1.50036 1.20998 1.37466 1.07916 1.22915 0.78883 0.93352 1.09360 1.22283 0.82020 0.94942 0.80261 1.92997 1.96608 1.91015 1.38508 1.93026 1.50580 1.81550 1.92637 1.22779 0.99757 0.95267 0.89891 1.19156 0.79238 0.88219 0.95170 0.95822 1.86514 1.23117 1.88878 1.39040 1.22000 1.36558 0.92390 1.11320 0.91960 1.25830 0.94776 0.99160 0.97605 1.70211 1.41175 1.08775 1.33453 0.85677 0.79266 0.77224 0.79766 1.19290 1.21440 1.19332 0.92625 0.89954 0.95232 0.87480 0.90423 0.73138 0.85778 0.83689 0.84395 0.90278 0.94378 0.80284 0.93136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.90 8.94 127.69 1.14 2.04 16 2 N -0.54 -17.86 4.69 -927.04 -4.35 -22.21 16 3 C 0.12 3.33 4.94 85.56 0.42 3.75 16 4 C 0.30 8.34 6.57 138.22 0.91 9.25 16 5 N -0.56 -15.43 10.60 -191.77 -2.03 -17.46 16 6 C 0.20 4.63 13.03 180.76 2.36 6.99 16 7 N -0.34 -8.29 12.70 -61.25 -0.78 -9.06 16 8 N -0.37 -9.27 3.63 -338.50 -1.23 -10.50 16 9 C 0.08 1.58 6.46 86.38 0.56 2.14 16 10 C 0.26 4.64 5.54 71.98 0.40 5.04 16 11 F -0.21 -4.65 16.60 44.97 0.75 -3.90 16 12 F -0.20 -3.93 17.34 44.97 0.78 -3.16 16 13 C 0.05 1.86 4.73 86.30 0.41 2.27 16 14 C 0.24 11.51 3.03 29.85 0.09 11.60 16 15 H 0.02 1.32 8.14 -2.39 -0.02 1.30 16 16 O -0.57 -27.77 9.67 -148.98 -1.44 -29.21 16 17 C -0.58 -30.38 8.76 25.60 0.22 -30.15 16 18 H 0.06 3.08 7.74 -2.91 -0.02 3.06 16 19 C 0.03 1.56 5.40 84.65 0.46 2.02 16 20 N -0.90 -52.51 12.84 21.45 0.28 -52.24 16 21 Si 0.96 42.02 29.54 68.60 2.03 44.04 16 22 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 23 H -0.29 -12.69 7.11 99.48 0.71 -11.99 16 24 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 25 H 0.05 1.84 6.70 -2.39 -0.02 1.82 16 26 H 0.08 3.19 5.51 -2.39 -0.01 3.18 16 27 H 0.03 0.91 8.04 -2.39 -0.02 0.89 16 28 H 0.11 2.65 6.85 -2.39 -0.02 2.64 16 29 H 0.08 2.01 8.10 -2.39 -0.02 1.99 16 30 H 0.25 3.43 8.06 -2.91 -0.02 3.40 16 31 H 0.12 2.77 7.60 -2.39 -0.02 2.75 16 32 H 0.15 2.39 8.14 -2.39 -0.02 2.37 16 33 H 0.14 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.08 2.76 7.78 -2.39 -0.02 2.74 16 35 H 0.04 1.35 7.98 -2.39 -0.02 1.33 16 36 H 0.35 15.19 9.04 -74.06 -0.67 14.52 16 37 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 Total: -1.00 -65.86 322.45 1.40 -64.46 By element: Atomic # 1 Polarization: 23.85 SS G_CDS: 0.44 Total: 24.29 kcal Atomic # 6 Polarization: 7.98 SS G_CDS: 6.97 Total: 14.95 kcal Atomic # 7 Polarization: -103.36 SS G_CDS: -8.11 Total: -111.47 kcal Atomic # 8 Polarization: -27.77 SS G_CDS: -1.44 Total: -29.21 kcal Atomic # 9 Polarization: -8.58 SS G_CDS: 1.53 Total: -7.05 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.04 kcal Total: -65.86 1.40 -64.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334225379.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.061 kcal (2) G-P(sol) polarization free energy of solvation -65.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds