Wall clock time and date at job start Tue Mar 31 2020 06:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 109.47132 * 2 1 4 4 C 1.50697 * 109.46873 * 120.00318 * 2 1 3 5 5 H 1.07997 * 120.00126 * 119.99928 * 4 2 1 6 6 C 1.37873 * 120.00151 * 299.99285 * 4 2 1 7 7 N 1.31510 * 120.00043 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00246 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.46924 * 59.99981 * 8 6 4 10 10 H 1.48495 * 109.47060 * 180.02562 * 8 6 4 11 11 H 1.48509 * 109.47122 * 300.00311 * 8 6 4 12 12 N 1.46499 * 109.46875 * 239.99797 * 2 1 3 13 13 C 1.34780 * 119.99612 * 85.00275 * 12 2 1 14 14 O 1.21646 * 120.00269 * 359.97438 * 13 12 2 15 15 C 1.47065 * 119.99774 * 180.02562 * 13 12 2 16 16 C 1.41348 * 126.48358 * 0.15071 * 15 13 12 17 17 N 1.30370 * 108.15880 * 180.29236 * 16 15 13 18 18 N 1.39908 * 109.12734 * 359.73947 * 17 16 15 19 19 C 1.46505 * 125.76106 * 179.97438 * 18 17 16 20 20 C 1.34711 * 108.48552 * 359.97438 * 18 17 16 21 21 N 1.39155 * 126.40534 * 179.97438 * 20 18 17 22 22 C 1.36455 * 127.12980 * 134.71310 * 21 20 18 23 23 N 1.30488 * 107.18265 * 179.83496 * 22 21 20 24 24 N 1.28534 * 109.94605 * 0.44294 * 23 22 21 25 25 C 1.30486 * 109.95279 * 359.71692 * 24 23 22 26 26 H 1.08996 * 109.47132 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46403 * 299.99836 * 1 2 3 28 28 H 1.08999 * 109.46782 * 59.99541 * 1 2 3 29 29 H 0.97002 * 120.00002 * 179.97438 * 7 6 4 30 30 H 0.97000 * 120.00632 * 265.00312 * 12 2 1 31 31 H 1.08000 * 125.92009 * 0.02562 * 16 15 13 32 32 H 1.09000 * 109.47017 * 270.02812 * 19 18 17 33 33 H 1.09005 * 109.47061 * 30.01789 * 19 18 17 34 34 H 1.08998 * 109.47638 * 150.02500 * 19 18 17 35 35 H 1.08000 * 126.40868 * 359.96408 * 22 21 20 36 36 H 1.07992 * 126.41308 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6994 -0.2394 2.4827 7 7 0.9430 0.8296 2.6034 8 14 2.3225 -1.1197 4.0079 9 1 3.8075 -1.1193 4.0076 10 1 1.8270 -0.4200 5.2204 11 1 1.8280 -2.5200 4.0081 12 7 2.0183 -0.6907 -1.1962 13 6 2.1471 -0.0182 -2.3571 14 8 1.8574 1.1620 -2.4119 15 6 2.6367 -0.7117 -3.5581 16 6 3.0068 -2.0727 -3.6505 17 7 3.3922 -2.3068 -4.8737 18 7 3.2860 -1.1289 -5.6212 19 6 3.6247 -0.9810 -7.0388 20 6 2.8196 -0.1536 -4.8174 21 7 2.5742 1.1676 -5.1788 22 6 1.4744 1.9148 -4.8718 23 7 1.6502 3.0948 -5.4005 24 7 2.7747 3.1337 -6.0220 25 6 3.3806 1.9827 -5.9187 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3632 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 0.7084 1.1608 3.4845 30 1 2.2490 -1.6318 -1.1527 31 1 2.9795 -2.7928 -2.8460 32 1 4.6723 -0.6953 -7.1342 33 1 3.4582 -1.9276 -7.5529 34 1 2.9959 -0.2101 -7.4842 35 1 0.6195 1.5910 -4.2968 36 1 4.3407 1.7236 -6.3396 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338903956.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:23 Heat of formation + Delta-G solvation = 136.023868 kcal Electronic energy + Delta-G solvation = -22912.916919 eV Core-core repulsion = 19436.297371 eV Total energy + Delta-G solvation = -3476.619548 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.123 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.34812 -41.55827 -38.65870 -35.35269 -34.77537 -33.68370 -32.41161 -30.67123 -30.04776 -28.93734 -27.26883 -25.29820 -24.15957 -23.01005 -22.31520 -21.25620 -20.66522 -19.55551 -18.78734 -17.22289 -16.60426 -16.11669 -15.74247 -15.51500 -15.30928 -14.96159 -14.76769 -14.35868 -14.10973 -13.95144 -13.34316 -13.02799 -13.00885 -12.44727 -11.82995 -11.73191 -11.63247 -11.21749 -11.12091 -10.99619 -10.79386 -10.54937 -10.37953 -10.27054 -9.73102 -9.59178 -9.20553 -9.11386 -8.90198 -8.59177 -7.99630 -6.15732 -4.25651 0.72015 1.43503 1.82482 1.98627 2.45806 2.84878 3.23542 3.29438 3.29962 3.74161 3.77855 4.16860 4.24733 4.35653 4.54498 4.61167 4.61910 4.82345 4.89407 4.95293 5.16888 5.18569 5.44492 5.68673 5.89052 6.01658 6.09380 6.77653 6.82647 6.90327 7.08054 7.09014 7.35084 7.48912 7.64020 7.85871 8.10087 8.54922 8.58137 8.70882 8.98240 9.41814 10.90130 Molecular weight = 290.12amu Principal moments of inertia in cm(-1) A = 0.022102 B = 0.004342 C = 0.003809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.555040 B = 6446.758532 C = 7349.739707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.266 3.734 3 H 0.051 0.949 4 C -0.537 4.537 5 H 0.061 0.939 6 C 0.068 3.932 7 N -0.882 5.882 8 Si 0.902 3.098 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.695 5.695 13 C 0.573 3.427 14 O -0.555 6.555 15 C -0.251 4.251 16 C 0.096 3.904 17 N -0.268 5.268 18 N -0.361 5.361 19 C 0.090 3.910 20 C 0.335 3.665 21 N -0.421 5.421 22 C 0.242 3.758 23 N -0.301 5.301 24 N -0.281 5.281 25 C 0.144 3.856 26 H 0.027 0.973 27 H 0.091 0.909 28 H 0.015 0.985 29 H 0.266 0.734 30 H 0.388 0.612 31 H 0.204 0.796 32 H 0.085 0.915 33 H 0.103 0.897 34 H 0.088 0.912 35 H 0.226 0.774 36 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.428 -7.128 -16.987 18.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.165 3.835 3 H 0.068 0.932 4 C -0.575 4.575 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.519 5.519 8 Si 0.729 3.271 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.201 1.201 12 N -0.341 5.341 13 C 0.358 3.642 14 O -0.435 6.435 15 C -0.268 4.268 16 C -0.091 4.091 17 N -0.089 5.089 18 N -0.144 5.144 19 C -0.051 4.051 20 C 0.111 3.889 21 N -0.114 5.114 22 C -0.044 4.044 23 N -0.137 5.137 24 N -0.118 5.118 25 C -0.143 4.143 26 H 0.046 0.954 27 H 0.109 0.891 28 H 0.034 0.966 29 H 0.076 0.924 30 H 0.221 0.779 31 H 0.221 0.779 32 H 0.103 0.897 33 H 0.121 0.879 34 H 0.107 0.893 35 H 0.242 0.758 36 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 4.321 -5.495 -18.203 19.499 hybrid contribution 0.557 -1.777 1.852 2.626 sum 4.878 -7.272 -16.351 18.548 Atomic orbital electron populations 1.22078 0.98219 0.99186 1.01021 1.18797 0.91120 0.94028 0.79561 0.93151 1.21147 1.32742 1.13351 0.90256 0.92071 1.24872 0.94751 0.94916 0.99047 1.69884 1.35608 1.22326 1.24091 0.86506 0.79172 0.79583 0.81826 1.20184 1.21119 1.20126 1.46347 1.64242 1.13428 1.10066 1.17047 0.78581 0.86271 0.82324 1.90774 1.52590 1.15230 1.84949 1.20433 1.17534 0.95464 0.93407 1.24098 0.95203 0.94853 0.94968 1.77314 1.24653 1.01853 1.05076 1.48594 1.50343 1.05513 1.09976 1.22120 1.02393 1.05237 0.75356 1.17618 1.00653 0.80531 0.90107 1.43330 1.17989 1.08057 1.42011 1.27050 0.91791 0.87313 0.98289 1.74306 1.11145 1.16009 1.12231 1.74170 1.02458 1.17619 1.17509 1.26758 0.99914 0.88211 0.99376 0.95396 0.89069 0.96571 0.92442 0.77890 0.77932 0.89663 0.87868 0.89342 0.75760 0.76646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.46 9.26 37.16 0.34 -3.11 16 2 C 0.27 6.44 2.56 -69.08 -0.18 6.26 16 3 H 0.05 1.43 7.58 -51.93 -0.39 1.03 16 4 C -0.54 -13.62 8.73 -34.44 -0.30 -13.92 16 5 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -24.28 11.32 55.43 0.63 -23.65 16 8 Si 0.90 20.10 29.54 -169.99 -5.02 15.08 16 9 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 10 H -0.29 -6.40 7.11 56.52 0.40 -5.99 16 11 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 12 N -0.69 -13.36 5.06 -56.12 -0.28 -13.64 16 13 C 0.57 10.67 7.76 -12.68 -0.10 10.57 16 14 O -0.56 -12.14 13.13 5.24 0.07 -12.07 16 15 C -0.25 -3.65 6.13 -104.87 -0.64 -4.29 16 16 C 0.10 1.11 11.49 -16.99 -0.20 0.91 16 17 N -0.27 -3.08 12.48 30.86 0.39 -2.69 16 18 N -0.36 -3.78 3.99 -66.62 -0.27 -4.05 16 19 C 0.09 0.52 10.71 59.85 0.64 1.16 16 20 C 0.33 4.37 7.20 -152.93 -1.10 3.27 16 21 N -0.42 -5.75 2.76 -64.49 -0.18 -5.93 16 22 C 0.24 3.79 10.36 -89.08 -0.92 2.87 16 23 N -0.30 -5.20 12.19 29.87 0.36 -4.83 16 24 N -0.28 -4.44 12.19 29.87 0.36 -4.07 16 25 C 0.14 1.77 11.44 -89.08 -1.02 0.75 16 26 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 28 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 30 H 0.39 6.24 7.49 -40.82 -0.31 5.94 16 31 H 0.20 1.72 7.50 -52.49 -0.39 1.33 16 32 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.09 0.46 7.51 -51.93 -0.39 0.07 16 35 H 0.23 3.39 7.23 -52.49 -0.38 3.01 16 36 H 0.22 1.62 8.03 -52.49 -0.42 1.20 16 LS Contribution 314.94 15.07 4.75 4.75 Total: -1.00 -33.30 314.94 -6.59 -39.89 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -3.83 Total: 5.08 kcal Atomic # 6 Polarization: 9.71 SS G_CDS: -3.57 Total: 6.15 kcal Atomic # 7 Polarization: -59.88 SS G_CDS: 1.01 Total: -58.87 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: 0.07 Total: -12.07 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -33.30 -6.59 -39.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338903956.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.912 kcal (2) G-P(sol) polarization free energy of solvation -33.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds