Wall clock time and date at job start Tue Mar 31 2020 06:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 109.47132 * 2 1 4 4 C 1.50697 * 109.46873 * 120.00318 * 2 1 3 5 5 H 1.07997 * 120.00126 * 119.99928 * 4 2 1 6 6 C 1.37873 * 120.00151 * 299.99285 * 4 2 1 7 7 N 1.31510 * 120.00043 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00246 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.46924 * 59.99981 * 8 6 4 10 10 H 1.48495 * 109.47060 * 180.02562 * 8 6 4 11 11 H 1.48509 * 109.47122 * 300.00311 * 8 6 4 12 12 N 1.46499 * 109.46875 * 239.99797 * 2 1 3 13 13 C 1.34780 * 119.99612 * 85.00275 * 12 2 1 14 14 O 1.21646 * 120.00269 * 359.97438 * 13 12 2 15 15 C 1.47065 * 119.99774 * 180.02562 * 13 12 2 16 16 C 1.41348 * 126.48358 * 0.15071 * 15 13 12 17 17 N 1.30370 * 108.15880 * 180.29236 * 16 15 13 18 18 N 1.39908 * 109.12734 * 359.73947 * 17 16 15 19 19 C 1.46505 * 125.76106 * 179.97438 * 18 17 16 20 20 C 1.34711 * 108.48552 * 359.97438 * 18 17 16 21 21 N 1.39155 * 126.40534 * 179.97438 * 20 18 17 22 22 C 1.36455 * 127.12980 * 134.71310 * 21 20 18 23 23 N 1.30488 * 107.18265 * 179.83496 * 22 21 20 24 24 N 1.28534 * 109.94605 * 0.44294 * 23 22 21 25 25 C 1.30486 * 109.95279 * 359.71692 * 24 23 22 26 26 H 1.08996 * 109.47132 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46403 * 299.99836 * 1 2 3 28 28 H 1.08999 * 109.46782 * 59.99541 * 1 2 3 29 29 H 0.97002 * 120.00002 * 179.97438 * 7 6 4 30 30 H 0.97000 * 120.00632 * 265.00312 * 12 2 1 31 31 H 1.08000 * 125.92009 * 0.02562 * 16 15 13 32 32 H 1.09000 * 109.47017 * 270.02812 * 19 18 17 33 33 H 1.09005 * 109.47061 * 30.01789 * 19 18 17 34 34 H 1.08998 * 109.47638 * 150.02500 * 19 18 17 35 35 H 1.08000 * 126.40868 * 359.96408 * 22 21 20 36 36 H 1.07992 * 126.41308 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6994 -0.2394 2.4827 7 7 0.9430 0.8296 2.6034 8 14 2.3225 -1.1197 4.0079 9 1 3.8075 -1.1193 4.0076 10 1 1.8270 -0.4200 5.2204 11 1 1.8280 -2.5200 4.0081 12 7 2.0183 -0.6907 -1.1962 13 6 2.1471 -0.0182 -2.3571 14 8 1.8574 1.1620 -2.4119 15 6 2.6367 -0.7117 -3.5581 16 6 3.0068 -2.0727 -3.6505 17 7 3.3922 -2.3068 -4.8737 18 7 3.2860 -1.1289 -5.6212 19 6 3.6247 -0.9810 -7.0388 20 6 2.8196 -0.1536 -4.8174 21 7 2.5742 1.1676 -5.1788 22 6 1.4744 1.9148 -4.8718 23 7 1.6502 3.0948 -5.4005 24 7 2.7747 3.1337 -6.0220 25 6 3.3806 1.9827 -5.9187 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3632 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 0.7084 1.1608 3.4845 30 1 2.2490 -1.6318 -1.1527 31 1 2.9795 -2.7928 -2.8460 32 1 4.6723 -0.6953 -7.1342 33 1 3.4582 -1.9276 -7.5529 34 1 2.9959 -0.2101 -7.4842 35 1 0.6195 1.5910 -4.2968 36 1 4.3407 1.7236 -6.3396 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338903956.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:22 Heat of formation + Delta-G solvation = 114.614468 kcal Electronic energy + Delta-G solvation = -22913.845300 eV Core-core repulsion = 19436.297371 eV Total energy + Delta-G solvation = -3477.547929 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.123 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -44.45066 -42.54066 -40.17839 -36.77731 -36.20288 -34.62085 -34.15321 -31.81060 -31.41684 -30.33131 -28.13536 -27.28911 -25.25596 -24.14538 -23.63437 -22.47286 -21.88998 -21.03359 -19.96454 -18.61832 -17.70433 -17.51116 -17.10705 -16.80758 -16.55376 -16.11817 -15.97112 -15.78059 -15.38825 -14.95730 -14.77567 -14.31398 -13.82140 -13.71538 -13.53241 -12.98282 -12.93928 -12.82406 -12.73338 -12.67327 -12.22807 -12.21472 -12.11010 -11.66819 -11.07686 -10.95066 -10.60570 -10.57600 -10.49755 -10.04937 -9.61845 -8.14022 -6.31186 -0.32420 0.50061 0.80088 0.97060 1.48266 1.49809 1.56444 1.57781 1.68809 2.33992 2.41108 2.60794 3.16967 3.24822 3.37756 3.51401 3.59894 3.85436 4.09159 4.20255 4.24925 4.31385 4.54502 4.58676 4.81680 4.89561 4.98454 5.02701 5.14396 5.21684 5.48108 5.63183 5.73178 5.82789 5.93907 6.13854 6.17637 6.76241 6.96657 7.35192 7.44402 7.54215 8.91878 Molecular weight = 290.12amu Principal moments of inertia in cm(-1) A = 0.022102 B = 0.004342 C = 0.003809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.555040 B = 6446.758532 C = 7349.739707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.275 3.725 3 H -0.002 1.002 4 C -0.545 4.545 5 H 0.077 0.923 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.970 3.030 9 H -0.272 1.272 10 H -0.290 1.290 11 H -0.262 1.262 12 N -0.691 5.691 13 C 0.573 3.427 14 O -0.595 6.595 15 C -0.278 4.278 16 C 0.106 3.894 17 N -0.268 5.268 18 N -0.344 5.344 19 C 0.075 3.925 20 C 0.336 3.664 21 N -0.422 5.422 22 C 0.232 3.768 23 N -0.333 5.333 24 N -0.318 5.318 25 C 0.171 3.829 26 H 0.042 0.958 27 H 0.064 0.936 28 H 0.015 0.985 29 H 0.264 0.736 30 H 0.406 0.594 31 H 0.231 0.769 32 H 0.114 0.886 33 H 0.121 0.879 34 H 0.096 0.904 35 H 0.220 0.780 36 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.302 -9.819 -18.350 21.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.171 3.829 3 H 0.016 0.984 4 C -0.584 4.584 5 H 0.095 0.905 6 C -0.185 4.185 7 N -0.556 5.556 8 Si 0.795 3.205 9 H -0.197 1.197 10 H -0.216 1.216 11 H -0.186 1.186 12 N -0.339 5.339 13 C 0.361 3.639 14 O -0.478 6.478 15 C -0.295 4.295 16 C -0.080 4.080 17 N -0.089 5.089 18 N -0.126 5.126 19 C -0.063 4.063 20 C 0.111 3.889 21 N -0.114 5.114 22 C -0.056 4.056 23 N -0.168 5.168 24 N -0.153 5.153 25 C -0.116 4.116 26 H 0.061 0.939 27 H 0.082 0.918 28 H 0.034 0.966 29 H 0.073 0.927 30 H 0.242 0.758 31 H 0.247 0.753 32 H 0.132 0.868 33 H 0.140 0.860 34 H 0.114 0.886 35 H 0.237 0.763 36 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges 6.219 -8.239 -19.624 22.174 hybrid contribution 0.033 -0.937 2.126 2.324 sum 6.253 -9.176 -17.498 20.724 Atomic orbital electron populations 1.21887 0.98083 0.99571 0.99631 1.18331 0.91178 0.91830 0.81516 0.98391 1.21523 1.32552 1.13625 0.90651 0.90511 1.25768 0.94906 0.95543 1.02288 1.70051 1.37020 1.23974 1.24565 0.85430 0.78583 0.78823 0.77690 1.19692 1.21582 1.18648 1.45985 1.64676 1.14129 1.09105 1.17520 0.77486 0.85846 0.83075 1.90758 1.54135 1.17206 1.85686 1.20024 1.20221 0.96895 0.92373 1.24452 0.93986 0.93820 0.95722 1.77335 1.24575 1.02020 1.04945 1.48961 1.48264 1.04247 1.11099 1.22627 1.04300 1.06775 0.72643 1.17554 1.00537 0.80552 0.90305 1.43337 1.17634 1.08475 1.41968 1.26938 0.92570 0.87473 0.98592 1.74231 1.12384 1.16947 1.13265 1.74091 1.02673 1.19596 1.18991 1.27647 1.00306 0.86707 0.96926 0.93905 0.91763 0.96611 0.92676 0.75834 0.75276 0.86767 0.86028 0.88581 0.76333 0.71799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.46 9.26 71.98 0.67 -5.79 16 2 C 0.27 13.63 2.56 44.25 0.11 13.75 16 3 H 0.00 -0.11 7.58 -2.39 -0.02 -0.13 16 4 C -0.55 -27.67 8.73 25.60 0.22 -27.44 16 5 H 0.08 3.56 7.74 -2.91 -0.02 3.54 16 6 C 0.02 0.79 5.30 84.65 0.45 1.24 16 7 N -0.92 -51.92 11.32 21.44 0.24 -51.68 16 8 Si 0.97 40.94 29.54 68.60 2.03 42.97 16 9 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 10 H -0.29 -12.35 7.11 99.48 0.71 -11.64 16 11 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 12 N -0.69 -26.57 5.06 -449.71 -2.28 -28.85 16 13 C 0.57 21.53 7.76 86.56 0.67 22.20 16 14 O -0.59 -27.08 13.13 -4.18 -0.05 -27.14 16 15 C -0.28 -7.68 6.13 -20.02 -0.12 -7.80 16 16 C 0.11 2.17 11.49 85.68 0.98 3.16 16 17 N -0.27 -5.20 12.48 -56.28 -0.70 -5.91 16 18 N -0.34 -6.00 3.99 -364.70 -1.46 -7.46 16 19 C 0.08 0.55 10.71 127.77 1.37 1.92 16 20 C 0.34 8.11 7.20 132.27 0.95 9.07 16 21 N -0.42 -11.04 2.76 -357.95 -0.99 -12.03 16 22 C 0.23 7.46 10.36 179.81 1.86 9.32 16 23 N -0.33 -11.78 12.19 -59.41 -0.72 -12.50 16 24 N -0.32 -9.88 12.19 -59.42 -0.72 -10.61 16 25 C 0.17 3.83 11.44 179.81 2.06 5.89 16 26 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.06 3.48 6.07 -2.39 -0.01 3.47 16 28 H 0.01 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 30 H 0.41 12.50 7.49 -92.71 -0.69 11.81 16 31 H 0.23 3.12 7.50 -2.91 -0.02 3.10 16 32 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 33 H 0.12 0.53 8.14 -2.38 -0.02 0.51 16 34 H 0.10 0.63 7.51 -2.39 -0.02 0.61 16 35 H 0.22 7.07 7.23 -2.91 -0.02 7.04 16 36 H 0.27 2.80 8.03 -2.91 -0.02 2.78 16 Total: -1.00 -75.48 314.94 5.01 -70.47 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: 0.44 Total: 17.23 kcal Atomic # 6 Polarization: 16.26 SS G_CDS: 9.23 Total: 25.49 kcal Atomic # 7 Polarization: -122.40 SS G_CDS: -6.63 Total: -129.02 kcal Atomic # 8 Polarization: -27.08 SS G_CDS: -0.05 Total: -27.14 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 2.03 Total: 42.97 kcal Total: -75.48 5.01 -70.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338903956.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.089 kcal (2) G-P(sol) polarization free energy of solvation -75.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds