Wall clock time and date at job start Tue Mar 31 2020 06:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50694 * 120.00329 * 2 1 4 4 N 1.46904 * 109.46965 * 124.99875 * 3 2 1 5 5 C 1.46894 * 111.00320 * 287.92377 * 4 3 2 6 6 C 1.50701 * 109.47315 * 160.76017 * 5 4 3 7 7 H 1.07994 * 119.99661 * 4.43075 * 6 5 4 8 8 C 1.37876 * 120.00080 * 184.42637 * 6 5 4 9 9 N 1.31510 * 119.99987 * 180.02562 * 8 6 5 10 10 Si 1.86809 * 120.00032 * 0.02562 * 8 6 5 11 11 H 1.48493 * 109.47029 * 89.99759 * 10 8 6 12 12 H 1.48497 * 109.46990 * 209.99995 * 10 8 6 13 13 H 1.48498 * 109.47037 * 329.99785 * 10 8 6 14 14 C 1.38384 * 110.99915 * 163.97270 * 4 3 2 15 15 N 1.31470 * 126.44170 * 108.31812 * 14 4 3 16 16 N 1.28422 * 110.50907 * 180.26105 * 15 14 4 17 17 N 1.28906 * 110.31494 * 359.74232 * 16 15 14 18 18 N 1.35310 * 126.43605 * 288.14289 * 14 4 3 19 19 C 1.46498 * 127.38245 * 0.02625 * 18 14 4 20 20 C 1.50698 * 109.47137 * 264.77270 * 19 18 14 21 21 C 1.41381 * 126.80348 * 124.99521 * 20 19 18 22 22 C 1.35454 * 103.98860 * 180.02562 * 21 20 19 23 23 O 1.34039 * 106.44471 * 0.02562 * 22 21 20 24 24 N 1.20926 * 111.56852 * 0.02562 * 23 22 21 25 25 H 1.08001 * 119.99913 * 359.97438 * 1 2 3 26 26 H 1.08004 * 120.00337 * 179.97438 * 1 2 3 27 27 H 1.08001 * 120.00068 * 180.02562 * 2 1 3 28 28 H 1.09006 * 109.47190 * 5.00114 * 3 2 1 29 29 H 1.09000 * 109.47550 * 245.00345 * 3 2 1 30 30 H 1.09004 * 109.47211 * 280.76540 * 5 4 3 31 31 H 1.09001 * 109.47023 * 40.76398 * 5 4 3 32 32 H 0.97004 * 120.00452 * 180.02562 * 9 8 6 33 33 H 1.09000 * 109.47247 * 144.78041 * 19 18 14 34 34 H 1.08999 * 109.47591 * 24.77186 * 19 18 14 35 35 H 1.08002 * 128.00402 * 0.06753 * 21 20 19 36 36 H 1.07998 * 126.77570 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9963 1.3318 1.1346 5 6 2.2759 1.4909 2.4048 6 6 3.1604 1.0505 3.5426 7 1 4.1816 0.7564 3.3501 8 6 2.6661 1.0230 4.8294 9 7 3.4381 0.6391 5.8224 10 14 0.8995 1.5311 5.1624 11 1 0.0153 0.3423 5.0624 12 1 0.7995 2.1092 6.5265 13 1 0.4796 2.5458 4.1628 14 6 3.9441 2.3273 0.9740 15 7 4.0178 3.4519 1.6509 16 7 5.0141 4.1550 1.2480 17 7 5.6428 3.5412 0.3048 18 7 4.9710 2.3246 0.0929 19 6 5.3069 1.2805 -0.8783 20 6 6.3471 0.3627 -0.2895 21 6 6.2601 -1.0424 -0.1583 22 6 7.4333 -1.3902 0.4227 23 8 8.1205 -0.2532 0.6004 24 7 7.5029 0.7066 0.2008 25 1 -0.5400 0.9353 0.0004 26 1 -0.5401 -0.9353 -0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3586 2.1316 0.0896 29 1 2.6213 1.4026 -0.9314 30 1 2.0044 2.5380 2.5399 31 1 1.3729 0.8806 2.3893 32 1 3.0902 0.6194 6.7277 33 1 5.6999 1.7405 -1.7850 34 1 4.4118 0.7074 -1.1201 35 1 5.4469 -1.6888 -0.4536 36 1 7.7519 -2.3869 0.6900 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340359225.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:25 Heat of formation + Delta-G solvation = 231.310710 kcal Electronic energy + Delta-G solvation = -23343.528470 eV Core-core repulsion = 19871.040870 eV Total energy + Delta-G solvation = -3472.487600 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.123 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -44.96613 -42.41540 -37.93325 -35.87606 -33.71037 -33.29755 -32.46134 -31.61506 -30.50439 -28.36873 -28.16257 -25.19614 -23.34294 -22.89217 -22.78703 -21.20215 -20.37794 -19.76284 -18.03880 -17.66760 -17.18293 -16.83494 -16.23342 -15.88885 -15.39244 -14.92083 -14.40913 -14.12118 -13.85918 -13.61399 -13.39902 -13.13298 -12.65725 -12.49966 -12.28346 -11.86116 -11.67844 -11.34492 -11.21304 -10.80957 -10.71180 -10.55779 -10.35703 -10.16746 -10.04677 -9.81104 -9.64818 -9.50816 -9.34966 -8.60761 -8.13353 -6.08759 -4.07405 1.38764 1.53217 1.83402 2.24273 2.52398 2.94363 3.25235 3.25862 3.34530 3.36034 3.93129 3.98931 4.22498 4.38315 4.74335 4.84244 4.89006 5.02382 5.14121 5.19623 5.23859 5.32093 5.32895 5.53579 5.59721 5.79331 5.82402 5.89756 5.94144 6.19539 6.51180 6.61713 6.67577 6.80564 7.10991 7.40260 7.62356 8.23420 8.46530 8.93758 9.11069 9.49213 11.04625 Molecular weight = 290.12amu Principal moments of inertia in cm(-1) A = 0.013010 B = 0.006253 C = 0.005837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.674324 B = 4476.742965 C = 4795.516359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.137 4.137 3 C 0.080 3.920 4 N -0.444 5.444 5 C 0.169 3.831 6 C -0.506 4.506 7 H 0.073 0.927 8 C 0.076 3.924 9 N -0.895 5.895 10 Si 0.872 3.128 11 H -0.275 1.275 12 H -0.283 1.283 13 H -0.264 1.264 14 C 0.453 3.547 15 N -0.335 5.335 16 N -0.036 5.036 17 N -0.093 5.093 18 N -0.395 5.395 19 C 0.218 3.782 20 C -0.014 4.014 21 C -0.210 4.210 22 C -0.059 4.059 23 O 0.110 5.890 24 N -0.335 5.335 25 H 0.095 0.905 26 H 0.102 0.898 27 H 0.119 0.881 28 H 0.056 0.944 29 H 0.076 0.924 30 H 0.026 0.974 31 H 0.043 0.957 32 H 0.265 0.735 33 H 0.116 0.884 34 H 0.123 0.877 35 H 0.176 0.824 36 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.416 -6.549 -17.010 18.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.156 4.156 3 C -0.047 4.047 4 N -0.168 5.168 5 C 0.045 3.955 6 C -0.544 4.544 7 H 0.091 0.909 8 C -0.127 4.127 9 N -0.533 5.533 10 Si 0.699 3.301 11 H -0.201 1.201 12 H -0.209 1.209 13 H -0.189 1.189 14 C 0.087 3.913 15 N -0.191 5.191 16 N -0.032 5.032 17 N -0.080 5.080 18 N -0.196 5.196 19 C 0.094 3.906 20 C -0.173 4.173 21 C -0.232 4.232 22 C -0.140 4.140 23 O 0.038 5.962 24 N -0.035 5.035 25 H 0.113 0.887 26 H 0.121 0.879 27 H 0.137 0.863 28 H 0.075 0.925 29 H 0.094 0.906 30 H 0.044 0.956 31 H 0.061 0.939 32 H 0.075 0.925 33 H 0.134 0.866 34 H 0.141 0.859 35 H 0.193 0.807 36 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 0.997 -4.589 -16.326 16.988 hybrid contribution -1.950 -1.015 0.031 2.199 sum -0.953 -5.604 -16.296 17.258 Atomic orbital electron populations 1.23868 0.95802 1.02044 1.00518 1.22691 0.95547 0.97738 0.99608 1.21418 0.94133 0.96867 0.92265 1.58913 1.14708 1.36689 1.06529 1.20458 0.94086 0.97605 0.83329 1.20698 0.99360 1.44851 0.89532 0.90925 1.24766 0.97524 0.94567 0.95802 1.69874 1.36108 1.47419 0.99914 0.86904 0.85481 0.79329 0.78399 1.20098 1.20885 1.18906 1.23243 0.90727 0.90551 0.86787 1.75026 1.16606 1.02498 1.25012 1.77880 1.00742 1.21071 1.03534 1.82479 1.17519 0.91161 1.16820 1.51278 1.20952 1.17007 1.30409 1.19921 0.96626 0.84789 0.89237 1.23506 0.95073 0.94124 1.04645 1.22647 1.00431 0.94094 1.06047 1.26028 0.93155 0.93402 1.01418 1.84872 1.39974 1.11590 1.59749 1.73934 1.07376 1.09899 1.12315 0.88657 0.87941 0.86262 0.92526 0.90573 0.95627 0.93904 0.92503 0.86645 0.85866 0.80668 0.76515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.06 14.32 29.02 0.42 -1.65 16 2 C -0.14 -1.70 8.76 -36.03 -0.32 -2.01 16 3 C 0.08 1.12 5.04 -4.98 -0.03 1.10 16 4 N -0.44 -8.56 4.36 -177.60 -0.78 -9.33 16 5 C 0.17 3.93 3.40 -4.98 -0.02 3.91 16 6 C -0.51 -14.33 9.45 -34.44 -0.33 -14.66 16 7 H 0.07 2.33 8.06 -52.49 -0.42 1.91 16 8 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 9 N -0.89 -27.62 13.96 55.43 0.77 -26.85 16 10 Si 0.87 21.26 27.38 -169.99 -4.65 16.60 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 12 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 13 H -0.26 -6.21 6.67 56.52 0.38 -5.84 16 14 C 0.45 9.36 6.54 -320.41 -2.10 7.27 16 15 N -0.33 -7.96 10.90 30.10 0.33 -7.64 16 16 N -0.04 -0.83 13.38 60.35 0.81 -0.02 16 17 N -0.09 -1.91 13.93 60.35 0.84 -1.07 16 18 N -0.40 -7.16 3.67 -63.04 -0.23 -7.39 16 19 C 0.22 2.81 6.89 -5.20 -0.04 2.78 16 20 C -0.01 -0.20 6.91 -82.10 -0.57 -0.76 16 21 C -0.21 -2.39 11.12 -39.38 -0.44 -2.83 16 22 C -0.06 -0.63 12.30 29.74 0.37 -0.26 16 23 O 0.11 1.59 11.20 17.18 0.19 1.79 16 24 N -0.34 -5.64 12.07 33.42 0.40 -5.23 16 25 H 0.10 1.03 7.84 -52.49 -0.41 0.61 16 26 H 0.10 0.98 8.06 -52.48 -0.42 0.56 16 27 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 28 H 0.06 0.81 7.70 -51.93 -0.40 0.41 16 29 H 0.08 0.86 6.24 -51.93 -0.32 0.53 16 30 H 0.03 0.64 6.70 -51.93 -0.35 0.29 16 31 H 0.04 0.94 6.32 -51.93 -0.33 0.62 16 32 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 33 H 0.12 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.12 1.20 6.26 -51.93 -0.33 0.88 16 35 H 0.18 1.45 8.06 -52.49 -0.42 1.02 16 36 H 0.22 1.29 8.06 -52.49 -0.42 0.86 16 LS Contribution 319.72 15.07 4.82 4.82 Total: -1.00 -36.54 319.72 -4.47 -41.01 By element: Atomic # 1 Polarization: 2.15 SS G_CDS: -3.83 Total: -1.68 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: -3.14 Total: -5.01 kcal Atomic # 7 Polarization: -59.67 SS G_CDS: 2.15 Total: -57.52 kcal Atomic # 8 Polarization: 1.59 SS G_CDS: 0.19 Total: 1.79 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.65 Total: 16.60 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -36.54 -4.47 -41.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340359225.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 272.323 kcal (2) G-P(sol) polarization free energy of solvation -36.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 235.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 231.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds