Wall clock time and date at job start Tue Mar 31 2020 06:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50694 * 120.00329 * 2 1 4 4 N 1.46904 * 109.46965 * 124.99875 * 3 2 1 5 5 C 1.46894 * 111.00320 * 287.92377 * 4 3 2 6 6 C 1.50701 * 109.47315 * 160.76017 * 5 4 3 7 7 H 1.07994 * 119.99661 * 4.43075 * 6 5 4 8 8 C 1.37876 * 120.00080 * 184.42637 * 6 5 4 9 9 N 1.31510 * 119.99987 * 180.02562 * 8 6 5 10 10 Si 1.86809 * 120.00032 * 0.02562 * 8 6 5 11 11 H 1.48493 * 109.47029 * 89.99759 * 10 8 6 12 12 H 1.48497 * 109.46990 * 209.99995 * 10 8 6 13 13 H 1.48498 * 109.47037 * 329.99785 * 10 8 6 14 14 C 1.38384 * 110.99915 * 163.97270 * 4 3 2 15 15 N 1.31470 * 126.44170 * 108.31812 * 14 4 3 16 16 N 1.28422 * 110.50907 * 180.26105 * 15 14 4 17 17 N 1.28906 * 110.31494 * 359.74232 * 16 15 14 18 18 N 1.35310 * 126.43605 * 288.14289 * 14 4 3 19 19 C 1.46498 * 127.38245 * 0.02625 * 18 14 4 20 20 C 1.50698 * 109.47137 * 264.77270 * 19 18 14 21 21 C 1.41381 * 126.80348 * 124.99521 * 20 19 18 22 22 C 1.35454 * 103.98860 * 180.02562 * 21 20 19 23 23 O 1.34039 * 106.44471 * 0.02562 * 22 21 20 24 24 N 1.20926 * 111.56852 * 0.02562 * 23 22 21 25 25 H 1.08001 * 119.99913 * 359.97438 * 1 2 3 26 26 H 1.08004 * 120.00337 * 179.97438 * 1 2 3 27 27 H 1.08001 * 120.00068 * 180.02562 * 2 1 3 28 28 H 1.09006 * 109.47190 * 5.00114 * 3 2 1 29 29 H 1.09000 * 109.47550 * 245.00345 * 3 2 1 30 30 H 1.09004 * 109.47211 * 280.76540 * 5 4 3 31 31 H 1.09001 * 109.47023 * 40.76398 * 5 4 3 32 32 H 0.97004 * 120.00452 * 180.02562 * 9 8 6 33 33 H 1.09000 * 109.47247 * 144.78041 * 19 18 14 34 34 H 1.08999 * 109.47591 * 24.77186 * 19 18 14 35 35 H 1.08002 * 128.00402 * 0.06753 * 21 20 19 36 36 H 1.07998 * 126.77570 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9963 1.3318 1.1346 5 6 2.2759 1.4909 2.4048 6 6 3.1604 1.0505 3.5426 7 1 4.1816 0.7564 3.3501 8 6 2.6661 1.0230 4.8294 9 7 3.4381 0.6391 5.8224 10 14 0.8995 1.5311 5.1624 11 1 0.0153 0.3423 5.0624 12 1 0.7995 2.1092 6.5265 13 1 0.4796 2.5458 4.1628 14 6 3.9441 2.3273 0.9740 15 7 4.0178 3.4519 1.6509 16 7 5.0141 4.1550 1.2480 17 7 5.6428 3.5412 0.3048 18 7 4.9710 2.3246 0.0929 19 6 5.3069 1.2805 -0.8783 20 6 6.3471 0.3627 -0.2895 21 6 6.2601 -1.0424 -0.1583 22 6 7.4333 -1.3902 0.4227 23 8 8.1205 -0.2532 0.6004 24 7 7.5029 0.7066 0.2008 25 1 -0.5400 0.9353 0.0004 26 1 -0.5401 -0.9353 -0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3586 2.1316 0.0896 29 1 2.6213 1.4026 -0.9314 30 1 2.0044 2.5380 2.5399 31 1 1.3729 0.8806 2.3893 32 1 3.0902 0.6194 6.7277 33 1 5.6999 1.7405 -1.7850 34 1 4.4118 0.7074 -1.1201 35 1 5.4469 -1.6888 -0.4536 36 1 7.7519 -2.3869 0.6900 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001340359225.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:24 Heat of formation + Delta-G solvation = 204.756698 kcal Electronic energy + Delta-G solvation = -23344.679938 eV Core-core repulsion = 19871.040870 eV Total energy + Delta-G solvation = -3473.639069 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.123 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -46.00597 -44.00660 -39.38772 -37.10486 -35.04408 -34.61261 -34.26848 -32.63543 -32.11813 -30.14556 -29.40746 -26.50852 -24.83489 -24.40402 -24.10095 -22.49171 -21.83993 -20.75416 -19.15744 -19.07736 -18.75686 -18.25077 -17.71874 -17.45012 -16.68553 -16.12743 -15.93318 -15.46027 -15.26594 -14.78313 -14.49488 -14.47478 -14.19406 -13.97922 -13.84003 -13.22014 -13.14039 -12.71793 -12.55542 -12.41728 -12.26153 -11.98643 -11.93146 -11.73471 -11.65507 -11.46500 -11.23740 -10.78368 -10.61311 -10.29984 -9.72201 -8.29698 -6.33826 -0.09634 0.38637 0.73737 1.18605 1.32070 1.34001 1.39933 1.48418 1.50789 2.33961 2.40161 2.57338 2.99401 3.06394 3.13473 3.48680 3.75551 3.90451 3.96911 4.05117 4.22962 4.29284 4.32676 4.43770 4.48060 4.53717 4.71245 4.73074 4.85133 5.01495 5.09551 5.12249 5.32801 5.50178 5.75622 5.89605 5.92461 6.29043 6.66061 7.24864 7.26831 7.47811 8.87856 Molecular weight = 290.12amu Principal moments of inertia in cm(-1) A = 0.013010 B = 0.006253 C = 0.005837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.674324 B = 4476.742965 C = 4795.516359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.155 4.155 3 C 0.075 3.925 4 N -0.441 5.441 5 C 0.183 3.817 6 C -0.505 4.505 7 H 0.017 0.983 8 C 0.012 3.988 9 N -0.948 5.948 10 Si 0.943 3.057 11 H -0.249 1.249 12 H -0.288 1.288 13 H -0.249 1.249 14 C 0.447 3.553 15 N -0.380 5.380 16 N -0.062 5.062 17 N -0.095 5.095 18 N -0.380 5.380 19 C 0.205 3.795 20 C -0.030 4.030 21 C -0.214 4.214 22 C -0.052 4.052 23 O 0.090 5.910 24 N -0.388 5.388 25 H 0.099 0.901 26 H 0.122 0.878 27 H 0.129 0.871 28 H 0.057 0.943 29 H 0.106 0.894 30 H 0.013 0.987 31 H 0.066 0.934 32 H 0.267 0.733 33 H 0.144 0.856 34 H 0.160 0.840 35 H 0.209 0.791 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.945 -8.277 -19.024 20.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.174 4.174 3 C -0.050 4.050 4 N -0.166 5.166 5 C 0.057 3.943 6 C -0.544 4.544 7 H 0.036 0.964 8 C -0.186 4.186 9 N -0.589 5.589 10 Si 0.766 3.234 11 H -0.173 1.173 12 H -0.214 1.214 13 H -0.172 1.172 14 C 0.081 3.919 15 N -0.238 5.238 16 N -0.058 5.058 17 N -0.082 5.082 18 N -0.181 5.181 19 C 0.084 3.916 20 C -0.189 4.189 21 C -0.236 4.236 22 C -0.132 4.132 23 O 0.021 5.979 24 N -0.091 5.091 25 H 0.118 0.882 26 H 0.140 0.860 27 H 0.147 0.853 28 H 0.076 0.924 29 H 0.124 0.876 30 H 0.030 0.970 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.162 0.838 34 H 0.178 0.822 35 H 0.226 0.774 36 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges -1.521 -6.349 -18.401 19.525 hybrid contribution -1.055 -0.604 0.564 1.340 sum -2.576 -6.953 -17.837 19.316 Atomic orbital electron populations 1.24128 0.95484 1.03234 0.98084 1.22679 0.95957 0.97021 1.01713 1.21691 0.93763 0.98191 0.91316 1.58907 1.15247 1.35614 1.06826 1.20110 0.93856 0.96698 0.83613 1.20861 0.97659 1.44151 0.91700 0.96430 1.25777 1.02819 0.94528 0.95434 1.70052 1.38785 1.49508 1.00546 0.85779 0.79423 0.80092 0.78147 1.17347 1.21350 1.17215 1.23320 0.91512 0.90204 0.86889 1.74872 1.17768 1.04287 1.26878 1.77827 1.01296 1.22001 1.04654 1.82336 1.17450 0.92227 1.16190 1.51428 1.19493 1.16892 1.30305 1.20614 0.98184 0.84045 0.88735 1.23946 0.94709 0.95852 1.04413 1.23126 1.01589 0.93032 1.05839 1.26985 0.92637 0.93884 0.99696 1.84803 1.40607 1.12481 1.60023 1.73931 1.08961 1.11573 1.14621 0.88248 0.86032 0.85336 0.92426 0.87571 0.96950 0.91601 0.92437 0.83839 0.82225 0.77362 0.72125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.10 14.32 67.78 0.97 -2.13 16 2 C -0.16 -3.23 8.76 25.65 0.22 -3.01 16 3 C 0.08 1.89 5.04 85.55 0.43 2.32 16 4 N -0.44 -16.39 4.36 -715.79 -3.12 -19.52 16 5 C 0.18 8.29 3.40 85.56 0.29 8.58 16 6 C -0.51 -29.13 9.45 25.60 0.24 -28.89 16 7 H 0.02 1.17 8.06 -2.91 -0.02 1.15 16 8 C 0.01 0.69 5.47 84.66 0.46 1.16 16 9 N -0.95 -60.23 13.96 21.45 0.30 -59.94 16 10 Si 0.94 43.31 27.38 68.60 1.88 45.19 16 11 H -0.25 -10.38 7.11 99.48 0.71 -9.67 16 12 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 13 H -0.25 -10.69 6.67 99.48 0.66 -10.03 16 14 C 0.45 18.37 6.54 260.65 1.71 20.08 16 15 N -0.38 -18.49 10.90 -58.70 -0.64 -19.13 16 16 N -0.06 -2.91 13.38 37.02 0.50 -2.41 16 17 N -0.09 -3.95 13.93 37.02 0.52 -3.43 16 18 N -0.38 -13.52 3.67 -353.37 -1.30 -14.81 16 19 C 0.21 4.88 6.89 85.63 0.59 5.47 16 20 C -0.03 -0.84 6.91 43.58 0.30 -0.54 16 21 C -0.21 -4.38 11.12 22.40 0.25 -4.13 16 22 C -0.05 -1.02 12.30 67.18 0.83 -0.19 16 23 O 0.09 2.62 11.20 71.64 0.80 3.42 16 24 N -0.39 -13.19 12.07 -49.54 -0.60 -13.79 16 25 H 0.10 1.72 7.84 -2.91 -0.02 1.70 16 26 H 0.12 1.75 8.06 -2.91 -0.02 1.73 16 27 H 0.13 2.44 8.06 -2.91 -0.02 2.42 16 28 H 0.06 1.47 7.70 -2.38 -0.02 1.45 16 29 H 0.11 1.98 6.24 -2.39 -0.01 1.97 16 30 H 0.01 0.61 6.70 -2.38 -0.02 0.60 16 31 H 0.07 2.71 6.32 -2.39 -0.02 2.69 16 32 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 33 H 0.14 2.58 8.14 -2.39 -0.02 2.56 16 34 H 0.16 2.54 6.26 -2.39 -0.01 2.52 16 35 H 0.21 2.63 8.06 -2.91 -0.02 2.61 16 36 H 0.26 2.27 8.06 -2.91 -0.02 2.25 16 Total: -1.00 -85.06 319.72 5.70 -79.36 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: 1.07 Total: 6.33 kcal Atomic # 6 Polarization: -7.57 SS G_CDS: 6.29 Total: -1.27 kcal Atomic # 7 Polarization: -128.68 SS G_CDS: -4.35 Total: -133.03 kcal Atomic # 8 Polarization: 2.62 SS G_CDS: 0.80 Total: 3.42 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 1.88 Total: 45.19 kcal Total: -85.06 5.70 -79.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340359225.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 284.121 kcal (2) G-P(sol) polarization free energy of solvation -85.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 199.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 204.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds