Wall clock time and date at job start Tue Mar 31 2020 06:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.39886 * 125.74708 * 2 1 4 4 C 1.30289 * 109.23704 * 179.78406 * 3 2 1 5 5 C 1.41492 * 108.18386 * 0.38995 * 4 3 2 6 6 C 1.46758 * 126.51325 * 179.88226 * 5 4 3 7 7 O 1.21703 * 119.99899 * 179.68354 * 6 5 4 8 8 N 1.34772 * 120.00324 * 359.68112 * 6 5 4 9 9 C 1.40127 * 120.00165 * 180.02562 * 8 6 5 10 10 C 1.40409 * 125.97006 * 359.97438 * 9 8 6 11 11 C 1.35241 * 107.86602 * 179.74341 * 10 9 8 12 12 N 1.34966 * 107.86079 * 0.39163 * 11 10 9 13 13 C 1.46500 * 125.97782 * 179.87198 * 12 11 10 14 14 C 1.50706 * 109.47299 * 124.71059 * 13 12 11 15 15 H 1.07998 * 119.99503 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00434 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99826 * 359.72891 * 16 14 13 18 18 Si 1.86800 * 120.00406 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47364 * 179.72558 * 18 16 14 20 20 H 1.48508 * 109.46883 * 299.72681 * 18 16 14 21 21 H 1.48497 * 109.46870 * 59.72491 * 18 16 14 22 22 N 1.31224 * 125.97563 * 179.97438 * 9 8 6 23 23 C 1.34852 * 125.74513 * 180.02562 * 2 1 3 24 24 N 1.38019 * 126.44722 * 359.97438 * 23 2 1 25 25 H 1.08992 * 109.47217 * 269.96107 * 1 2 3 26 26 H 1.09001 * 109.47296 * 29.96249 * 1 2 3 27 27 H 1.08999 * 109.47497 * 149.95884 * 1 2 3 28 28 H 1.07997 * 125.90744 * 180.24572 * 4 3 2 29 29 H 0.96994 * 120.00059 * 359.97438 * 8 6 5 30 30 H 1.07996 * 126.07225 * 0.02562 * 10 9 8 31 31 H 1.08000 * 126.07608 * 180.26300 * 11 10 9 32 32 H 1.09004 * 109.47078 * 4.71821 * 13 12 11 33 33 H 1.08993 * 109.47364 * 244.71592 * 13 12 11 34 34 H 0.97000 * 120.00236 * 0.27947 * 17 16 14 35 35 H 0.96995 * 119.99678 * 179.97438 * 24 23 2 36 36 H 0.97002 * 119.99912 * 359.96453 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2823 1.1353 0.0000 4 6 3.5314 0.7651 0.0046 5 6 3.5728 -0.6492 -0.0013 6 6 4.7773 -1.4876 -0.0013 7 8 4.6746 -2.7003 -0.0010 8 7 5.9972 -0.9147 -0.0018 9 6 7.1473 -1.7152 -0.0023 10 6 7.1750 -3.1190 -0.0020 11 6 8.4701 -3.5085 -0.0085 12 7 9.2364 -2.3975 -0.0041 13 6 10.7010 -2.3622 -0.0059 14 6 11.1822 -1.5355 -1.1705 15 1 10.4684 -1.0815 -1.8418 16 6 12.5336 -1.3589 -1.3789 17 7 13.4027 -1.9074 -0.5583 18 14 13.1300 -0.3336 -2.8220 19 1 14.6144 -0.2929 -2.8205 20 1 12.6527 -0.9400 -4.0909 21 1 12.5968 1.0472 -2.7021 22 7 8.3866 -1.2840 -0.0033 23 6 2.2528 -1.0945 -0.0005 24 7 1.8307 -2.4086 -0.0006 25 1 -0.3633 -0.0007 1.0276 26 1 -0.3634 0.8903 -0.5132 27 1 -0.3634 -0.8896 -0.5145 28 1 4.3873 1.4237 0.0096 29 1 6.0791 0.0518 -0.0025 30 1 6.3148 -3.7720 -0.0016 31 1 8.8277 -4.5275 -0.0140 32 1 11.0888 -3.3770 -0.0960 33 1 11.0550 -1.9193 0.9249 34 1 13.0931 -2.4396 0.1912 35 1 2.4822 -3.1271 -0.0013 36 1 0.8826 -2.6134 0.0002 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342446663.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:26 Heat of formation + Delta-G solvation = 124.333442 kcal Electronic energy + Delta-G solvation = -21838.284822 eV Core-core repulsion = 18361.158340 eV Total energy + Delta-G solvation = -3477.126483 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.123 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.58682 -40.51813 -38.75667 -35.38104 -34.52660 -33.61617 -33.29739 -30.88232 -29.31435 -28.92171 -27.45289 -26.09921 -23.54859 -22.64667 -21.51755 -20.90414 -20.08381 -19.44028 -18.14942 -17.14720 -16.99528 -16.39668 -16.26667 -16.07191 -15.13050 -14.90151 -14.73627 -14.02157 -13.84810 -13.73535 -13.56981 -13.21628 -13.09536 -12.96850 -12.35533 -12.15543 -11.78062 -11.54328 -11.11992 -11.07281 -10.77254 -10.35241 -10.13106 -9.95299 -9.51694 -9.31351 -8.95161 -8.54566 -8.20445 -8.05740 -7.40219 -6.54384 -4.28172 1.59274 1.91887 2.02757 2.76245 2.94637 3.30124 3.36487 3.40721 3.42734 3.61471 3.92408 3.93466 4.17149 4.44464 4.63693 4.70827 4.91895 4.95583 5.16885 5.19442 5.30347 5.59479 5.80606 6.00091 6.28600 6.31852 6.49743 6.60480 6.69128 6.80527 6.99916 7.11722 7.45569 7.54468 7.62102 7.80524 7.89947 8.39038 8.44040 8.61042 8.68920 9.40015 10.83078 Molecular weight = 290.12amu Principal moments of inertia in cm(-1) A = 0.030380 B = 0.003026 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.429050 B = 9249.554246 C = 9896.200030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.403 5.403 3 N -0.304 5.304 4 C 0.116 3.884 5 C -0.367 4.367 6 C 0.613 3.387 7 O -0.548 6.548 8 N -0.627 5.627 9 C 0.265 3.735 10 C -0.284 4.284 11 C 0.048 3.952 12 N -0.319 5.319 13 C 0.250 3.750 14 C -0.607 4.607 15 H 0.064 0.936 16 C 0.022 3.978 17 N -0.906 5.906 18 Si 1.077 2.923 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.285 1.285 22 N -0.304 5.304 23 C 0.438 3.562 24 N -0.829 5.829 25 H 0.075 0.925 26 H 0.095 0.905 27 H 0.080 0.920 28 H 0.191 0.809 29 H 0.409 0.591 30 H 0.162 0.838 31 H 0.166 0.834 32 H 0.045 0.955 33 H 0.034 0.966 34 H 0.267 0.733 35 H 0.433 0.567 36 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.853 0.509 1.845 25.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.191 5.191 3 N -0.123 5.123 4 C -0.075 4.075 5 C -0.387 4.387 6 C 0.403 3.597 7 O -0.426 6.426 8 N -0.273 5.273 9 C 0.011 3.989 10 C -0.315 4.315 11 C -0.102 4.102 12 N -0.101 5.101 13 C 0.132 3.868 14 C -0.645 4.645 15 H 0.082 0.918 16 C -0.182 4.182 17 N -0.541 5.541 18 Si 0.904 3.096 19 H -0.206 1.206 20 H -0.213 1.213 21 H -0.211 1.211 22 N -0.135 5.135 23 C 0.203 3.797 24 N -0.379 5.379 25 H 0.093 0.907 26 H 0.113 0.887 27 H 0.099 0.901 28 H 0.208 0.792 29 H 0.245 0.755 30 H 0.179 0.821 31 H 0.183 0.817 32 H 0.063 0.937 33 H 0.052 0.948 34 H 0.077 0.923 35 H 0.270 0.730 36 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -24.589 2.274 1.100 24.718 hybrid contribution -1.499 -1.826 0.780 2.488 sum -26.088 0.448 1.880 26.159 Atomic orbital electron populations 1.21808 0.74165 1.04548 1.03411 1.48169 1.06428 1.02351 1.62168 1.77141 1.01738 1.05234 1.28156 1.23855 0.95365 0.93399 0.94841 1.19081 0.90475 0.93567 1.35557 1.16800 0.81218 0.86725 0.74960 1.90605 1.86221 1.14064 1.51717 1.42110 1.02530 1.09556 1.73123 1.19086 0.86500 0.90491 1.02806 1.21529 0.96950 0.93253 1.19782 1.22552 0.91282 0.93557 1.02773 1.48760 1.07463 1.01550 1.52332 1.19736 0.69140 0.98776 0.99199 1.22114 0.94908 1.35100 1.12367 0.91820 1.25920 0.92539 0.97619 1.02144 1.70850 1.36908 1.31326 1.15053 0.83422 0.76127 0.75768 0.74317 1.20571 1.21259 1.21104 1.77355 0.97625 1.10300 1.28204 1.17971 0.89331 0.81967 0.90467 1.41818 1.11284 1.02721 1.82080 0.90692 0.88660 0.90094 0.79203 0.75545 0.82105 0.81656 0.93709 0.94823 0.92294 0.73030 0.77230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.48 11.25 59.85 0.67 1.15 16 2 N -0.40 -3.82 4.00 -66.81 -0.27 -4.09 16 3 N -0.30 -3.49 12.47 30.88 0.38 -3.11 16 4 C 0.12 1.28 11.49 -16.97 -0.20 1.09 16 5 C -0.37 -4.63 6.15 -104.82 -0.64 -5.28 16 6 C 0.61 9.44 7.76 -12.82 -0.10 9.34 16 7 O -0.55 -9.30 12.26 5.19 0.06 -9.23 16 8 N -0.63 -10.24 5.44 -12.29 -0.07 -10.31 16 9 C 0.26 5.46 8.11 -154.42 -1.25 4.21 16 10 C -0.28 -5.70 9.60 -39.83 -0.38 -6.09 16 11 C 0.05 0.98 11.44 -17.24 -0.20 0.78 16 12 N -0.32 -7.61 3.67 -62.56 -0.23 -7.84 16 13 C 0.25 6.41 5.57 -5.19 -0.03 6.39 16 14 C -0.61 -17.28 9.24 -34.44 -0.32 -17.59 16 15 H 0.06 1.89 7.81 -52.49 -0.41 1.48 16 16 C 0.02 0.63 5.46 -17.82 -0.10 0.53 16 17 N -0.91 -26.61 13.65 55.43 0.76 -25.85 16 18 Si 1.08 25.17 29.90 -169.99 -5.08 20.09 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 N -0.30 -7.19 12.42 31.43 0.39 -6.80 16 23 C 0.44 4.64 7.98 -153.77 -1.23 3.41 16 24 N -0.83 -6.46 9.02 31.40 0.28 -6.18 16 25 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.08 0.18 7.46 -51.93 -0.39 -0.21 16 28 H 0.19 1.54 7.50 -52.49 -0.39 1.15 16 29 H 0.41 5.55 7.77 -40.82 -0.32 5.23 16 30 H 0.16 3.07 5.91 -52.49 -0.31 2.76 16 31 H 0.17 2.74 8.06 -52.49 -0.42 2.32 16 32 H 0.05 1.11 7.94 -51.93 -0.41 0.70 16 33 H 0.03 0.90 8.00 -51.93 -0.42 0.48 16 34 H 0.27 7.67 7.22 -40.82 -0.29 7.37 16 35 H 0.43 3.97 7.01 -40.82 -0.29 3.69 16 36 H 0.40 1.66 8.04 -40.82 -0.33 1.33 16 LS Contribution 317.21 15.07 4.78 4.78 Total: -1.00 -36.27 317.21 -6.38 -42.65 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -3.62 Total: 7.95 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: -3.77 Total: -2.07 kcal Atomic # 7 Polarization: -65.42 SS G_CDS: 1.25 Total: -64.17 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.06 Total: -9.23 kcal Atomic # 14 Polarization: 25.17 SS G_CDS: -5.08 Total: 20.09 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -36.27 -6.38 -42.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342446663.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.980 kcal (2) G-P(sol) polarization free energy of solvation -36.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds