Wall clock time and date at job start Tue Mar 31 2020 06:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.39886 * 125.74708 * 2 1 4 4 C 1.30289 * 109.23704 * 179.78406 * 3 2 1 5 5 C 1.41492 * 108.18386 * 0.38995 * 4 3 2 6 6 C 1.46758 * 126.51325 * 179.88226 * 5 4 3 7 7 O 1.21703 * 119.99899 * 179.68354 * 6 5 4 8 8 N 1.34772 * 120.00324 * 359.68112 * 6 5 4 9 9 C 1.40127 * 120.00165 * 180.02562 * 8 6 5 10 10 C 1.40409 * 125.97006 * 359.97438 * 9 8 6 11 11 C 1.35241 * 107.86602 * 179.74341 * 10 9 8 12 12 N 1.34966 * 107.86079 * 0.39163 * 11 10 9 13 13 C 1.46500 * 125.97782 * 179.87198 * 12 11 10 14 14 C 1.50706 * 109.47299 * 124.71059 * 13 12 11 15 15 H 1.07998 * 119.99503 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00434 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99826 * 359.72891 * 16 14 13 18 18 Si 1.86800 * 120.00406 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47364 * 179.72558 * 18 16 14 20 20 H 1.48508 * 109.46883 * 299.72681 * 18 16 14 21 21 H 1.48497 * 109.46870 * 59.72491 * 18 16 14 22 22 N 1.31224 * 125.97563 * 179.97438 * 9 8 6 23 23 C 1.34852 * 125.74513 * 180.02562 * 2 1 3 24 24 N 1.38019 * 126.44722 * 359.97438 * 23 2 1 25 25 H 1.08992 * 109.47217 * 269.96107 * 1 2 3 26 26 H 1.09001 * 109.47296 * 29.96249 * 1 2 3 27 27 H 1.08999 * 109.47497 * 149.95884 * 1 2 3 28 28 H 1.07997 * 125.90744 * 180.24572 * 4 3 2 29 29 H 0.96994 * 120.00059 * 359.97438 * 8 6 5 30 30 H 1.07996 * 126.07225 * 0.02562 * 10 9 8 31 31 H 1.08000 * 126.07608 * 180.26300 * 11 10 9 32 32 H 1.09004 * 109.47078 * 4.71821 * 13 12 11 33 33 H 1.08993 * 109.47364 * 244.71592 * 13 12 11 34 34 H 0.97000 * 120.00236 * 0.27947 * 17 16 14 35 35 H 0.96995 * 119.99678 * 179.97438 * 24 23 2 36 36 H 0.97002 * 119.99912 * 359.96453 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2823 1.1353 0.0000 4 6 3.5314 0.7651 0.0046 5 6 3.5728 -0.6492 -0.0013 6 6 4.7773 -1.4876 -0.0013 7 8 4.6746 -2.7003 -0.0010 8 7 5.9972 -0.9147 -0.0018 9 6 7.1473 -1.7152 -0.0023 10 6 7.1750 -3.1190 -0.0020 11 6 8.4701 -3.5085 -0.0085 12 7 9.2364 -2.3975 -0.0041 13 6 10.7010 -2.3622 -0.0059 14 6 11.1822 -1.5355 -1.1705 15 1 10.4684 -1.0815 -1.8418 16 6 12.5336 -1.3589 -1.3789 17 7 13.4027 -1.9074 -0.5583 18 14 13.1300 -0.3336 -2.8220 19 1 14.6144 -0.2929 -2.8205 20 1 12.6527 -0.9400 -4.0909 21 1 12.5968 1.0472 -2.7021 22 7 8.3866 -1.2840 -0.0033 23 6 2.2528 -1.0945 -0.0005 24 7 1.8307 -2.4086 -0.0006 25 1 -0.3633 -0.0007 1.0276 26 1 -0.3634 0.8903 -0.5132 27 1 -0.3634 -0.8896 -0.5145 28 1 4.3873 1.4237 0.0096 29 1 6.0791 0.0518 -0.0025 30 1 6.3148 -3.7720 -0.0016 31 1 8.8277 -4.5275 -0.0140 32 1 11.0888 -3.3770 -0.0960 33 1 11.0550 -1.9193 0.9249 34 1 13.0931 -2.4396 0.1912 35 1 2.4822 -3.1271 -0.0013 36 1 0.8826 -2.6134 0.0002 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342446663.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:25 Heat of formation + Delta-G solvation = 98.036605 kcal Electronic energy + Delta-G solvation = -21839.425139 eV Core-core repulsion = 18361.158340 eV Total energy + Delta-G solvation = -3478.266799 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.123 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.48397 -42.04176 -40.03879 -36.45595 -35.94018 -35.28310 -34.04341 -32.63157 -30.96475 -29.88587 -28.36291 -27.68643 -25.22997 -24.03839 -22.61859 -22.21022 -21.26418 -20.78381 -19.22777 -18.99240 -18.14842 -17.75688 -17.13866 -16.85981 -16.67251 -16.19698 -15.77810 -15.66971 -15.45413 -15.04991 -14.82060 -14.30534 -14.11021 -13.85370 -13.68740 -13.60247 -13.48941 -13.18270 -12.59230 -12.28603 -11.97823 -11.93859 -11.91109 -11.56216 -10.97101 -10.80851 -10.67372 -10.04368 -9.76986 -9.21360 -8.88786 -8.72950 -6.53778 0.63754 1.05557 1.18166 1.25381 1.50121 1.52659 1.59193 1.80885 1.92876 2.43634 2.52259 2.63315 2.74749 3.03033 3.47831 3.85999 3.98831 4.10093 4.18017 4.40411 4.46643 4.50739 4.60113 4.68310 4.82518 4.87038 4.90636 5.17904 5.34367 5.55574 5.59330 5.88191 5.99283 6.22880 6.29458 6.32940 6.45117 6.47785 6.86069 7.04479 7.21868 7.22654 8.60206 Molecular weight = 290.12amu Principal moments of inertia in cm(-1) A = 0.030380 B = 0.003026 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.429050 B = 9249.554246 C = 9896.200030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.400 5.400 3 N -0.323 5.323 4 C 0.116 3.884 5 C -0.394 4.394 6 C 0.612 3.388 7 O -0.567 6.567 8 N -0.624 5.624 9 C 0.273 3.727 10 C -0.288 4.288 11 C 0.053 3.947 12 N -0.346 5.346 13 C 0.260 3.740 14 C -0.621 4.621 15 H 0.045 0.955 16 C -0.019 4.019 17 N -0.924 5.924 18 Si 1.120 2.880 19 H -0.275 1.275 20 H -0.271 1.271 21 H -0.275 1.275 22 N -0.349 5.349 23 C 0.441 3.559 24 N -0.814 5.814 25 H 0.089 0.911 26 H 0.101 0.899 27 H 0.108 0.892 28 H 0.210 0.790 29 H 0.420 0.580 30 H 0.174 0.826 31 H 0.201 0.799 32 H 0.054 0.946 33 H 0.016 0.984 34 H 0.261 0.739 35 H 0.429 0.571 36 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.981 0.470 1.226 28.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.188 5.188 3 N -0.141 5.141 4 C -0.075 4.075 5 C -0.414 4.414 6 C 0.404 3.596 7 O -0.447 6.447 8 N -0.271 5.271 9 C 0.018 3.982 10 C -0.319 4.319 11 C -0.095 4.095 12 N -0.128 5.128 13 C 0.141 3.859 14 C -0.659 4.659 15 H 0.063 0.937 16 C -0.219 4.219 17 N -0.560 5.560 18 Si 0.941 3.059 19 H -0.200 1.200 20 H -0.196 1.196 21 H -0.200 1.200 22 N -0.180 5.180 23 C 0.203 3.797 24 N -0.364 5.364 25 H 0.108 0.892 26 H 0.120 0.880 27 H 0.127 0.873 28 H 0.227 0.773 29 H 0.258 0.742 30 H 0.191 0.809 31 H 0.218 0.782 32 H 0.071 0.929 33 H 0.033 0.967 34 H 0.070 0.930 35 H 0.265 0.735 36 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -26.808 2.232 0.497 26.906 hybrid contribution -1.087 -1.860 1.022 2.384 sum -27.896 0.372 1.519 27.939 Atomic orbital electron populations 1.22243 0.71449 1.06320 1.04978 1.48466 1.07780 1.01332 1.61246 1.77085 1.02033 1.06518 1.28439 1.24182 0.96025 0.93109 0.94172 1.18966 0.90152 0.94063 1.38178 1.17222 0.81378 0.86862 0.74096 1.90571 1.86432 1.14965 1.52691 1.42240 1.01679 1.09966 1.73255 1.19449 0.86829 0.91416 1.00538 1.21764 0.97207 0.93251 1.19678 1.23190 0.91107 0.94289 1.00961 1.48553 1.06867 1.02662 1.54699 1.19397 0.70782 0.98446 0.97320 1.22298 0.94955 1.35631 1.13003 0.93669 1.27280 0.92830 0.97921 1.03859 1.70946 1.37216 1.32271 1.15565 0.82883 0.76020 0.74943 0.72103 1.19984 1.19640 1.20045 1.77273 0.98807 1.11170 1.30723 1.18027 0.89073 0.83077 0.89545 1.41799 1.12409 1.01516 1.80709 0.89205 0.88025 0.87315 0.77313 0.74234 0.80912 0.78217 0.92871 0.96663 0.92989 0.73528 0.75041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.57 11.25 127.77 1.44 2.01 16 2 N -0.40 -6.68 4.00 -365.30 -1.46 -8.14 16 3 N -0.32 -6.88 12.47 -56.22 -0.70 -7.59 16 4 C 0.12 2.43 11.49 85.72 0.99 3.41 16 5 C -0.39 -9.48 6.15 -19.99 -0.12 -9.60 16 6 C 0.61 18.38 7.76 86.47 0.67 19.05 16 7 O -0.57 -18.72 12.26 -4.36 -0.05 -18.77 16 8 N -0.62 -20.17 5.44 -311.01 -1.69 -21.86 16 9 C 0.27 11.24 8.11 133.33 1.08 12.32 16 10 C -0.29 -11.38 9.60 22.11 0.21 -11.16 16 11 C 0.05 2.10 11.44 83.52 0.96 3.06 16 12 N -0.35 -16.66 3.67 -351.84 -1.29 -17.95 16 13 C 0.26 13.63 5.57 85.64 0.48 14.11 16 14 C -0.62 -35.91 9.24 25.60 0.24 -35.68 16 15 H 0.04 2.73 7.81 -2.91 -0.02 2.71 16 16 C -0.02 -1.10 5.46 84.65 0.46 -0.64 16 17 N -0.92 -54.62 13.65 21.45 0.29 -54.33 16 18 Si 1.12 50.33 29.90 68.60 2.05 52.38 16 19 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 20 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 21 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 22 N -0.35 -16.76 12.42 -54.47 -0.68 -17.44 16 23 C 0.44 8.48 7.98 132.69 1.06 9.53 16 24 N -0.81 -10.83 9.02 -54.56 -0.49 -11.32 16 25 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 26 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.11 0.08 7.46 -2.39 -0.02 0.06 16 28 H 0.21 3.18 7.50 -2.91 -0.02 3.15 16 29 H 0.42 11.32 7.77 -92.71 -0.72 10.60 16 30 H 0.17 6.40 5.91 -2.91 -0.02 6.38 16 31 H 0.20 6.28 8.06 -2.91 -0.02 6.25 16 32 H 0.05 2.67 7.94 -2.39 -0.02 2.65 16 33 H 0.02 0.85 8.00 -2.39 -0.02 0.83 16 34 H 0.26 15.24 7.22 -92.71 -0.67 14.57 16 35 H 0.43 7.10 7.01 -92.71 -0.65 6.45 16 36 H 0.42 2.22 8.04 -92.71 -0.75 1.47 16 Total: -1.00 -78.37 317.21 2.59 -75.78 By element: Atomic # 1 Polarization: 23.66 SS G_CDS: -0.84 Total: 22.81 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: 7.45 Total: 6.42 kcal Atomic # 7 Polarization: -132.60 SS G_CDS: -6.02 Total: -138.62 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: -0.05 Total: -18.77 kcal Atomic # 14 Polarization: 50.33 SS G_CDS: 2.05 Total: 52.38 kcal Total: -78.37 2.59 -75.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342446663.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.820 kcal (2) G-P(sol) polarization free energy of solvation -78.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds