Wall clock time and date at job start Tue Mar 31 2020 06:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 O 1.45198 * 109.47199 * 119.99529 * 2 1 3 13 13 C 1.34233 * 117.00153 * 270.00621 * 12 2 1 14 14 O 1.20821 * 120.00092 * 359.97438 * 13 12 2 15 15 C 1.50705 * 119.99698 * 180.02562 * 13 12 2 16 16 C 1.52991 * 109.43971 * 59.99819 * 15 13 12 17 17 C 1.53075 * 109.43192 * 179.91231 * 15 13 12 18 18 C 1.53412 * 108.29252 * 168.25186 * 17 15 13 19 19 O 1.42830 * 108.36799 * 295.25500 * 18 17 15 20 20 C 1.35846 * 117.86398 * 49.14848 * 19 18 17 21 21 C 1.39142 * 118.49883 * 162.97957 * 20 19 18 22 22 C 1.37975 * 120.21693 * 179.82110 * 21 20 19 23 23 C 1.38295 * 119.95630 * 359.97438 * 22 21 20 24 24 C 1.38102 * 119.98293 * 0.08080 * 23 22 21 25 25 C 1.38312 * 121.78955 * 342.88576 * 20 19 18 26 26 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 28 28 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 29 29 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 30 30 H 1.09006 * 109.47414 * 59.99822 * 16 15 13 31 31 H 1.08999 * 109.47445 * 179.97438 * 16 15 13 32 32 H 1.09005 * 109.47297 * 300.00065 * 16 15 13 33 33 H 1.08997 * 109.69838 * 287.95265 * 17 15 13 34 34 H 1.09001 * 109.70140 * 48.51455 * 17 15 13 35 35 H 1.09000 * 109.68095 * 54.96748 * 18 17 15 36 36 H 1.08997 * 109.68785 * 175.49341 * 18 17 15 37 37 H 1.07997 * 119.89602 * 359.79555 * 21 20 19 38 38 H 1.07999 * 120.02404 * 179.97438 * 22 21 20 39 39 H 1.07998 * 120.00980 * 180.10271 * 23 22 21 40 40 H 1.07995 * 119.84161 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 8 2.0140 -0.6844 1.1856 13 6 2.2170 0.0642 2.2812 14 8 1.9980 1.2520 2.2504 15 6 2.7193 -0.5769 3.5493 16 6 4.0795 -1.2263 3.2873 17 6 2.8655 0.4909 4.6364 18 6 3.0878 -0.2166 5.9793 19 8 1.9112 -0.9621 6.2955 20 6 1.3931 -1.7689 5.3332 21 6 0.4890 -2.7569 5.7110 22 6 -0.0618 -3.5936 4.7623 23 6 0.2843 -3.4507 3.4310 24 6 1.1821 -2.4720 3.0525 25 6 1.7394 -1.6296 4.0014 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 0.7088 1.1611 -3.4845 30 1 4.7881 -0.4659 2.9590 31 1 4.4435 -1.6898 4.2043 32 1 3.9764 -1.9857 2.5121 33 1 3.7197 1.1294 4.4116 34 1 1.9585 1.0937 4.6837 35 1 3.9403 -0.8914 5.9021 36 1 3.2746 0.5233 6.7576 37 1 0.2179 -2.8694 6.7503 38 1 -0.7629 -4.3596 5.0591 39 1 -0.1476 -4.1041 2.6874 40 1 1.4512 -2.3627 2.0124 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344515072.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:53 Heat of formation + Delta-G solvation = -106.730275 kcal Electronic energy + Delta-G solvation = -24038.383291 eV Core-core repulsion = 20590.191975 eV Total energy + Delta-G solvation = -3448.191316 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.19403 -39.32898 -37.43124 -36.05890 -35.05274 -33.26876 -30.68972 -30.17289 -29.60350 -28.30107 -25.38555 -25.11605 -23.81779 -22.77642 -21.58583 -20.25668 -18.86471 -17.88900 -17.00112 -16.53998 -16.33493 -16.13027 -15.47496 -15.03141 -14.84666 -14.52093 -14.05596 -13.73331 -13.51420 -13.31140 -13.06654 -12.51269 -12.29723 -12.16884 -12.00426 -11.80752 -11.79875 -11.35488 -11.21936 -11.07684 -10.94546 -10.88350 -10.63326 -10.48173 -10.32774 -10.30721 -9.67739 -9.51047 -8.94978 -8.67009 -8.51341 -8.08234 -6.20838 -4.28336 1.37930 1.56821 2.91322 3.23877 3.24912 3.28281 3.30228 3.49311 3.94500 4.29943 4.45924 4.60814 4.74703 4.98237 5.05080 5.12239 5.15666 5.26804 5.32266 5.46647 5.52480 5.55062 5.66962 5.76594 5.87855 5.96049 6.03127 6.19193 6.29056 6.42788 6.61584 6.65162 6.73834 6.86482 6.88600 6.94382 7.12577 7.47153 7.56334 7.69627 7.89940 8.10625 8.57907 8.83748 9.37253 10.86413 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.021956 B = 0.004931 C = 0.004500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.984321 B = 5676.904422 C = 6220.440066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.214 3.786 3 H 0.046 0.954 4 C -0.522 4.522 5 H 0.068 0.932 6 C 0.063 3.937 7 N -0.888 5.888 8 Si 0.911 3.089 9 H -0.285 1.285 10 H -0.275 1.275 11 H -0.274 1.274 12 O -0.349 6.349 13 C 0.469 3.531 14 O -0.515 6.515 15 C -0.010 4.010 16 C -0.138 4.138 17 C -0.142 4.142 18 C 0.064 3.936 19 O -0.318 6.318 20 C 0.138 3.862 21 C -0.159 4.159 22 C -0.085 4.085 23 C -0.154 4.154 24 C -0.071 4.071 25 C -0.154 4.154 26 H 0.037 0.963 27 H 0.015 0.985 28 H 0.099 0.901 29 H 0.267 0.733 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.067 0.933 36 H 0.110 0.890 37 H 0.127 0.873 38 H 0.126 0.874 39 H 0.125 0.875 40 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.809 -6.408 15.317 16.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.162 3.838 3 H 0.063 0.937 4 C -0.560 4.560 5 H 0.087 0.913 6 C -0.139 4.139 7 N -0.526 5.526 8 Si 0.738 3.262 9 H -0.210 1.210 10 H -0.200 1.200 11 H -0.199 1.199 12 O -0.266 6.266 13 C 0.311 3.689 14 O -0.404 6.404 15 C -0.011 4.011 16 C -0.195 4.195 17 C -0.180 4.180 18 C -0.011 4.011 19 O -0.232 6.232 20 C 0.093 3.907 21 C -0.178 4.178 22 C -0.103 4.103 23 C -0.172 4.172 24 C -0.088 4.088 25 C -0.155 4.155 26 H 0.056 0.944 27 H 0.034 0.966 28 H 0.117 0.883 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.097 0.903 33 H 0.110 0.890 34 H 0.108 0.892 35 H 0.086 0.914 36 H 0.128 0.872 37 H 0.145 0.855 38 H 0.144 0.856 39 H 0.143 0.857 40 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 2.576 -5.893 15.287 16.585 hybrid contribution 0.266 -0.114 -1.124 1.160 sum 2.842 -6.006 14.164 15.645 Atomic orbital electron populations 1.22154 0.97519 1.00129 1.01369 1.20659 0.91405 0.93937 0.77766 0.93670 1.20965 1.32637 1.13522 0.88839 0.91344 1.24885 0.94887 0.95069 0.99055 1.69892 1.35895 1.22511 1.24304 0.86341 0.79202 0.79559 0.81072 1.21038 1.19999 1.19918 1.86425 1.75705 1.43167 1.21274 1.22869 0.74632 0.85706 0.85679 1.90592 1.48435 1.16841 1.84561 1.19338 0.95987 0.94257 0.91548 1.21936 0.93206 1.01525 1.02849 1.22213 1.05313 0.97300 0.93128 1.23046 0.85981 0.94708 0.97405 1.85953 1.42802 1.56143 1.38308 1.18632 0.94750 0.90682 0.86633 1.20479 1.00873 0.96111 1.00344 1.20957 0.98443 0.98065 0.92866 1.21098 0.99961 1.00064 0.96053 1.21756 0.93748 0.92241 1.01084 1.19409 1.03169 1.00274 0.92683 0.94393 0.96624 0.88257 0.92323 0.91460 0.91587 0.90348 0.88967 0.89222 0.91442 0.87181 0.85475 0.85635 0.85669 0.82666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.90 9.33 37.16 0.35 -3.55 16 2 C 0.21 5.66 2.56 -27.89 -0.07 5.59 16 3 H 0.05 1.33 7.16 -51.92 -0.37 0.96 16 4 C -0.52 -14.29 8.90 -34.44 -0.31 -14.60 16 5 H 0.07 1.83 7.81 -52.49 -0.41 1.42 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -25.03 11.32 55.43 0.63 -24.40 16 8 Si 0.91 20.78 29.54 -169.99 -5.02 15.76 16 9 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 11 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 12 O -0.35 -8.00 6.88 -39.27 -0.27 -8.27 16 13 C 0.47 9.85 6.33 36.01 0.23 10.07 16 14 O -0.51 -12.23 15.00 -18.75 -0.28 -12.51 16 15 C -0.01 -0.16 0.61 -156.75 -0.10 -0.26 16 16 C -0.14 -1.87 8.17 37.15 0.30 -1.56 16 17 C -0.14 -1.95 4.39 -26.48 -0.12 -2.07 16 18 C 0.06 0.69 6.96 37.37 0.26 0.96 16 19 O -0.32 -4.34 10.27 -19.26 -0.20 -4.54 16 20 C 0.14 2.04 6.47 -39.22 -0.25 1.78 16 21 C -0.16 -2.08 9.94 -39.34 -0.39 -2.47 16 22 C -0.09 -1.05 10.04 -39.66 -0.40 -1.45 16 23 C -0.15 -2.15 10.04 -39.61 -0.40 -2.55 16 24 C -0.07 -1.16 8.94 -39.51 -0.35 -1.51 16 25 C -0.15 -2.47 4.70 -104.44 -0.49 -2.96 16 26 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.10 2.69 6.07 -51.93 -0.32 2.37 16 29 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.07 0.72 6.65 -51.93 -0.35 0.38 16 32 H 0.08 1.13 8.09 -51.93 -0.42 0.71 16 33 H 0.09 1.14 8.10 -51.93 -0.42 0.72 16 34 H 0.09 1.40 7.71 -51.93 -0.40 1.00 16 35 H 0.07 0.64 6.56 -51.93 -0.34 0.30 16 36 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 38 H 0.13 1.17 8.06 -52.49 -0.42 0.74 16 39 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 40 H 0.16 2.85 5.33 -52.49 -0.28 2.57 16 LS Contribution 325.55 15.07 4.91 4.91 Total: -1.00 -30.70 325.55 -7.47 -38.16 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -5.40 Total: 3.84 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: -1.83 Total: -12.95 kcal Atomic # 7 Polarization: -25.03 SS G_CDS: 0.63 Total: -24.40 kcal Atomic # 8 Polarization: -24.57 SS G_CDS: -0.75 Total: -25.32 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.70 -7.47 -38.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344515072.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.566 kcal (2) G-P(sol) polarization free energy of solvation -30.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds