Wall clock time and date at job start Tue Mar 31 2020 06:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 O 1.45198 * 109.47199 * 119.99529 * 2 1 3 13 13 C 1.34233 * 117.00153 * 270.00621 * 12 2 1 14 14 O 1.20821 * 120.00092 * 359.97438 * 13 12 2 15 15 C 1.50705 * 119.99698 * 180.02562 * 13 12 2 16 16 C 1.52991 * 109.43971 * 59.99819 * 15 13 12 17 17 C 1.53075 * 109.43192 * 179.91231 * 15 13 12 18 18 C 1.53412 * 108.29252 * 168.25186 * 17 15 13 19 19 O 1.42830 * 108.36799 * 295.25500 * 18 17 15 20 20 C 1.35846 * 117.86398 * 49.14848 * 19 18 17 21 21 C 1.39142 * 118.49883 * 162.97957 * 20 19 18 22 22 C 1.37975 * 120.21693 * 179.82110 * 21 20 19 23 23 C 1.38295 * 119.95630 * 359.97438 * 22 21 20 24 24 C 1.38102 * 119.98293 * 0.08080 * 23 22 21 25 25 C 1.38312 * 121.78955 * 342.88576 * 20 19 18 26 26 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 28 28 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 29 29 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 30 30 H 1.09006 * 109.47414 * 59.99822 * 16 15 13 31 31 H 1.08999 * 109.47445 * 179.97438 * 16 15 13 32 32 H 1.09005 * 109.47297 * 300.00065 * 16 15 13 33 33 H 1.08997 * 109.69838 * 287.95265 * 17 15 13 34 34 H 1.09001 * 109.70140 * 48.51455 * 17 15 13 35 35 H 1.09000 * 109.68095 * 54.96748 * 18 17 15 36 36 H 1.08997 * 109.68785 * 175.49341 * 18 17 15 37 37 H 1.07997 * 119.89602 * 359.79555 * 21 20 19 38 38 H 1.07999 * 120.02404 * 179.97438 * 22 21 20 39 39 H 1.07998 * 120.00980 * 180.10271 * 23 22 21 40 40 H 1.07995 * 119.84161 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 8 2.0140 -0.6844 1.1856 13 6 2.2170 0.0642 2.2812 14 8 1.9980 1.2520 2.2504 15 6 2.7193 -0.5769 3.5493 16 6 4.0795 -1.2263 3.2873 17 6 2.8655 0.4909 4.6364 18 6 3.0878 -0.2166 5.9793 19 8 1.9112 -0.9621 6.2955 20 6 1.3931 -1.7689 5.3332 21 6 0.4890 -2.7569 5.7110 22 6 -0.0618 -3.5936 4.7623 23 6 0.2843 -3.4507 3.4310 24 6 1.1821 -2.4720 3.0525 25 6 1.7394 -1.6296 4.0014 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 0.7088 1.1611 -3.4845 30 1 4.7881 -0.4659 2.9590 31 1 4.4435 -1.6898 4.2043 32 1 3.9764 -1.9857 2.5121 33 1 3.7197 1.1294 4.4116 34 1 1.9585 1.0937 4.6837 35 1 3.9403 -0.8914 5.9021 36 1 3.2746 0.5233 6.7576 37 1 0.2179 -2.8694 6.7503 38 1 -0.7629 -4.3596 5.0591 39 1 -0.1476 -4.1041 2.6874 40 1 1.4512 -2.3627 2.0124 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344515072.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:53 Heat of formation + Delta-G solvation = -123.331803 kcal Electronic energy + Delta-G solvation = -24039.103187 eV Core-core repulsion = 20590.191975 eV Total energy + Delta-G solvation = -3448.911213 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.45757 -40.88645 -38.49465 -37.78916 -36.41758 -35.31741 -31.90048 -31.48526 -31.25575 -29.41525 -27.49505 -26.39827 -25.00183 -24.03134 -23.09349 -21.93242 -20.19148 -19.13680 -18.78260 -18.14879 -17.66511 -17.35832 -17.11630 -16.56376 -16.32065 -15.89843 -15.19595 -15.01118 -14.88634 -14.60730 -14.52133 -14.03308 -13.90905 -13.55358 -13.32853 -13.22424 -13.11038 -12.94930 -12.83939 -12.83052 -12.44973 -12.36016 -12.18511 -12.02780 -11.71737 -11.64415 -11.50932 -11.22408 -11.02301 -10.60633 -9.79309 -9.15314 -8.29919 -6.47192 0.28086 0.47056 1.23641 1.40942 1.44755 1.52686 1.87475 2.33108 2.39612 2.82228 3.00887 3.29605 3.43258 3.64883 3.82641 3.93030 4.10379 4.24285 4.28152 4.45327 4.49050 4.49650 4.54764 4.59566 4.70565 4.73336 4.74286 4.79710 4.88275 4.94201 5.09606 5.12392 5.19882 5.35617 5.45298 5.52373 5.58274 5.65055 5.85278 5.87767 6.04084 6.43604 6.57110 6.88710 7.24433 8.77680 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.021956 B = 0.004931 C = 0.004500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.984321 B = 5676.904422 C = 6220.440066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.218 3.782 3 H 0.004 0.996 4 C -0.545 4.545 5 H 0.070 0.930 6 C 0.017 3.983 7 N -0.918 5.918 8 Si 0.982 3.018 9 H -0.278 1.278 10 H -0.268 1.268 11 H -0.263 1.263 12 O -0.347 6.347 13 C 0.461 3.539 14 O -0.550 6.550 15 C -0.006 4.006 16 C -0.134 4.134 17 C -0.141 4.141 18 C 0.066 3.934 19 O -0.323 6.323 20 C 0.130 3.870 21 C -0.159 4.159 22 C -0.074 4.074 23 C -0.160 4.160 24 C -0.097 4.097 25 C -0.172 4.172 26 H 0.046 0.954 27 H 0.014 0.986 28 H 0.081 0.919 29 H 0.271 0.729 30 H 0.070 0.930 31 H 0.099 0.901 32 H 0.063 0.937 33 H 0.104 0.896 34 H 0.063 0.937 35 H 0.090 0.910 36 H 0.144 0.856 37 H 0.154 0.846 38 H 0.163 0.837 39 H 0.138 0.862 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.340 -8.344 16.980 19.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.165 3.835 3 H 0.021 0.979 4 C -0.583 4.583 5 H 0.088 0.912 6 C -0.183 4.183 7 N -0.556 5.556 8 Si 0.805 3.195 9 H -0.204 1.204 10 H -0.193 1.193 11 H -0.187 1.187 12 O -0.263 6.263 13 C 0.305 3.695 14 O -0.442 6.442 15 C -0.007 4.007 16 C -0.191 4.191 17 C -0.179 4.179 18 C -0.008 4.008 19 O -0.237 6.237 20 C 0.085 3.915 21 C -0.177 4.177 22 C -0.092 4.092 23 C -0.178 4.178 24 C -0.115 4.115 25 C -0.173 4.173 26 H 0.065 0.935 27 H 0.033 0.967 28 H 0.100 0.900 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.118 0.882 32 H 0.082 0.918 33 H 0.122 0.878 34 H 0.082 0.918 35 H 0.108 0.892 36 H 0.162 0.838 37 H 0.171 0.829 38 H 0.181 0.819 39 H 0.156 0.844 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 3.114 -7.837 16.976 18.955 hybrid contribution 0.070 0.523 -1.563 1.649 sum 3.183 -7.315 15.413 17.355 Atomic orbital electron populations 1.21960 0.97029 1.00312 1.00378 1.20335 0.91788 0.92016 0.79404 0.97869 1.21229 1.33418 1.13915 0.89692 0.91208 1.25837 0.94665 0.95616 1.02166 1.70020 1.36563 1.23722 1.25269 0.85239 0.78809 0.78657 0.76753 1.20352 1.19264 1.18749 1.86477 1.75822 1.42837 1.21138 1.24090 0.73444 0.85496 0.86452 1.90562 1.49983 1.18470 1.85137 1.19493 0.97102 0.95057 0.89035 1.21960 0.91843 1.01212 1.04118 1.22251 1.04617 0.96803 0.94199 1.23318 0.85740 0.95377 0.96352 1.85949 1.43774 1.56067 1.37902 1.18823 0.95198 0.91306 0.86163 1.20890 0.99739 0.95213 1.01842 1.21350 0.97980 0.98207 0.91665 1.21319 0.99385 0.99572 0.97570 1.21629 0.95765 0.94168 0.99906 1.19411 1.03947 1.00419 0.93514 0.93451 0.96654 0.90046 0.92012 0.91064 0.88227 0.91769 0.87791 0.91812 0.89236 0.83840 0.82875 0.81934 0.84443 0.85553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.37 9.33 71.98 0.67 -6.70 16 2 C 0.22 12.10 2.56 29.85 0.08 12.18 16 3 H 0.00 0.22 7.16 -2.38 -0.02 0.20 16 4 C -0.55 -30.79 8.90 25.60 0.23 -30.56 16 5 H 0.07 3.82 7.81 -2.91 -0.02 3.80 16 6 C 0.02 0.93 5.30 84.66 0.45 1.38 16 7 N -0.92 -53.02 11.32 21.45 0.24 -52.78 16 8 Si 0.98 42.66 29.54 68.60 2.03 44.69 16 9 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 10 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 11 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 12 O -0.35 -16.75 6.88 -51.45 -0.35 -17.11 16 13 C 0.46 20.29 6.33 71.24 0.45 20.74 16 14 O -0.55 -27.67 15.00 21.98 0.33 -27.34 16 15 C -0.01 -0.18 0.61 -53.63 -0.03 -0.22 16 16 C -0.13 -3.54 8.17 71.98 0.59 -2.95 16 17 C -0.14 -3.77 4.39 30.76 0.14 -3.64 16 18 C 0.07 1.26 6.96 72.12 0.50 1.76 16 19 O -0.32 -7.95 10.27 -91.82 -0.94 -8.89 16 20 C 0.13 3.60 6.47 22.50 0.15 3.74 16 21 C -0.16 -3.66 9.94 22.42 0.22 -3.43 16 22 C -0.07 -1.61 10.04 22.22 0.22 -1.39 16 23 C -0.16 -4.32 10.04 22.25 0.22 -4.09 16 24 C -0.10 -3.22 8.94 22.32 0.20 -3.02 16 25 C -0.17 -5.44 4.70 -19.75 -0.09 -5.53 16 26 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 27 H 0.01 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.08 4.61 6.07 -2.39 -0.01 4.59 16 29 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 30 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 31 H 0.10 1.94 6.65 -2.39 -0.02 1.92 16 32 H 0.06 1.87 8.09 -2.38 -0.02 1.85 16 33 H 0.10 2.47 8.10 -2.39 -0.02 2.45 16 34 H 0.06 2.03 7.71 -2.39 -0.02 2.01 16 35 H 0.09 1.34 6.56 -2.39 -0.02 1.33 16 36 H 0.14 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.15 2.71 8.06 -2.91 -0.02 2.69 16 38 H 0.16 2.29 8.06 -2.91 -0.02 2.26 16 39 H 0.14 3.23 8.06 -2.91 -0.02 3.21 16 40 H 0.13 4.90 5.33 -2.91 -0.02 4.88 16 Total: -1.00 -69.61 325.55 6.34 -63.28 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: 1.04 Total: 19.88 kcal Atomic # 6 Polarization: -25.72 SS G_CDS: 3.99 Total: -21.73 kcal Atomic # 7 Polarization: -53.02 SS G_CDS: 0.24 Total: -52.78 kcal Atomic # 8 Polarization: -52.38 SS G_CDS: -0.97 Total: -53.34 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Total: -69.61 6.34 -63.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344515072.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.053 kcal (2) G-P(sol) polarization free energy of solvation -69.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds