Wall clock time and date at job start Tue Mar 31 2020 06:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47405 * 2 1 4 4 C 1.50703 * 109.47445 * 239.99475 * 2 1 3 5 5 H 1.08005 * 119.99921 * 275.00459 * 4 2 1 6 6 C 1.37871 * 119.99925 * 95.00076 * 4 2 1 7 7 N 1.31510 * 120.00269 * 184.91682 * 6 4 2 8 8 Si 1.86805 * 120.00173 * 4.91721 * 6 4 2 9 9 H 1.48506 * 109.46780 * 84.83231 * 8 6 4 10 10 H 1.48494 * 109.47088 * 204.83436 * 8 6 4 11 11 H 1.48497 * 109.47049 * 324.83483 * 8 6 4 12 12 O 1.45210 * 109.46894 * 119.99921 * 2 1 3 13 13 C 1.34229 * 116.99751 * 269.99921 * 12 2 1 14 14 O 1.20827 * 119.99896 * 0.02562 * 13 12 2 15 15 C 1.50699 * 120.00040 * 180.02562 * 13 12 2 16 16 C 1.53005 * 109.40238 * 300.09982 * 15 13 12 17 17 C 1.53075 * 109.43864 * 180.20597 * 15 13 12 18 18 C 1.53402 * 108.29594 * 191.65875 * 17 15 13 19 19 O 1.42827 * 108.40140 * 64.65850 * 18 17 15 20 20 C 1.35838 * 117.86774 * 310.82101 * 19 18 17 21 21 C 1.39146 * 118.50993 * 197.07982 * 20 19 18 22 22 C 1.37967 * 120.21980 * 180.54195 * 21 20 19 23 23 C 1.38296 * 119.95422 * 359.95622 * 22 21 20 24 24 C 1.38101 * 119.98398 * 359.90961 * 23 22 21 25 25 C 1.38370 * 121.80113 * 17.40104 * 20 19 18 26 26 H 1.08999 * 109.47341 * 295.04257 * 1 2 3 27 27 H 1.09008 * 109.46510 * 55.03490 * 1 2 3 28 28 H 1.09000 * 109.47713 * 175.03371 * 1 2 3 29 29 H 0.97000 * 120.00416 * 180.02562 * 7 6 4 30 30 H 1.09000 * 109.47227 * 179.89810 * 16 15 13 31 31 H 1.09002 * 109.47006 * 299.89965 * 16 15 13 32 32 H 1.09000 * 109.47231 * 59.89488 * 16 15 13 33 33 H 1.08999 * 109.69207 * 311.36197 * 17 15 13 34 34 H 1.09001 * 109.69792 * 71.91928 * 17 15 13 35 35 H 1.09003 * 109.67539 * 184.38394 * 18 17 15 36 36 H 1.08997 * 109.68045 * 304.89043 * 18 17 15 37 37 H 1.08004 * 119.88926 * 0.50985 * 21 20 19 38 38 H 1.07995 * 120.02739 * 179.97438 * 22 21 20 39 39 H 1.08005 * 120.00271 * 179.97438 * 23 22 21 40 40 H 1.08007 * 119.84073 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.1355 -1.7856 -1.2289 6 6 2.3603 0.0119 -2.3580 7 7 2.7060 -0.6134 -3.4621 8 14 2.3136 1.8789 -2.3175 9 1 3.5992 2.3947 -1.7822 10 1 2.1058 2.3987 -3.6929 11 1 1.1987 2.3274 -1.4452 12 8 2.0139 -0.6845 1.1857 13 6 2.2170 0.0640 2.2812 14 8 1.9973 1.2517 2.2506 15 6 2.7192 -0.5769 3.5493 16 6 1.7243 -1.6454 4.0072 17 6 2.8585 0.4895 4.6385 18 6 3.6380 -0.1190 5.8113 19 8 4.9602 -0.4229 5.3646 20 6 5.0947 -1.1153 4.2038 21 6 6.3141 -1.7290 3.9340 22 6 6.4931 -2.4319 2.7604 23 6 5.4578 -2.5285 1.8486 24 6 4.2454 -1.9231 2.1143 25 6 4.0596 -1.2171 3.2912 26 1 -0.3634 0.4350 0.9310 27 1 -0.3633 0.5890 -0.8423 28 1 -0.3634 -1.0238 -0.0890 29 1 2.9371 -0.1051 -4.2553 30 1 2.0873 -2.1110 4.9234 31 1 0.7550 -1.1831 4.1939 32 1 1.6218 -2.4032 3.2304 33 1 3.4002 1.3491 4.2438 34 1 1.8701 0.8014 4.9759 35 1 3.6833 0.5965 6.6324 36 1 3.1444 -1.0312 6.1462 37 1 7.1232 -1.6543 4.6454 38 1 7.4409 -2.9066 2.5540 39 1 5.5973 -3.0782 0.9294 40 1 3.4382 -2.0004 1.4007 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344515073.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:56 Heat of formation + Delta-G solvation = -105.789379 kcal Electronic energy + Delta-G solvation = -24179.495629 eV Core-core repulsion = 20731.345113 eV Total energy + Delta-G solvation = -3448.150516 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.20534 -39.43090 -37.38372 -36.17563 -35.11217 -33.09716 -30.83842 -30.40783 -30.10153 -28.35684 -25.47590 -25.17462 -23.81104 -22.72476 -21.56617 -20.15664 -18.93971 -17.99984 -17.31376 -16.56854 -16.45922 -16.02573 -15.72466 -15.27742 -14.81137 -14.30029 -14.08881 -13.70452 -13.49055 -13.23934 -13.00004 -12.69342 -12.51197 -12.45150 -12.20534 -11.97683 -11.84179 -11.64473 -11.37543 -11.10042 -11.03612 -10.92039 -10.77585 -10.63061 -10.37404 -10.01951 -9.73241 -9.53850 -9.16690 -8.75721 -8.61648 -8.02666 -6.31728 -4.35723 1.43480 1.64180 2.79959 3.16747 3.26316 3.27045 3.32028 3.40597 3.99118 4.22937 4.43141 4.58671 4.72834 4.94076 4.96727 5.08469 5.19400 5.30713 5.31522 5.44836 5.53437 5.58269 5.68436 5.74215 5.80005 5.96225 5.98587 6.13017 6.20615 6.26067 6.37271 6.46134 6.50991 6.63923 6.72818 6.83914 6.98839 7.09298 7.30689 7.46649 7.52754 8.17814 8.56263 8.77381 9.27621 10.79266 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.018161 B = 0.006015 C = 0.005196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.360262 B = 4653.906865 C = 5387.669983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.179 3.821 3 H 0.046 0.954 4 C -0.518 4.518 5 H 0.086 0.914 6 C 0.085 3.915 7 N -0.879 5.879 8 Si 0.867 3.133 9 H -0.270 1.270 10 H -0.281 1.281 11 H -0.261 1.261 12 O -0.341 6.341 13 C 0.468 3.532 14 O -0.520 6.520 15 C -0.010 4.010 16 C -0.138 4.138 17 C -0.142 4.142 18 C 0.064 3.936 19 O -0.318 6.318 20 C 0.136 3.864 21 C -0.161 4.161 22 C -0.084 4.084 23 C -0.150 4.150 24 C -0.068 4.068 25 C -0.159 4.159 26 H 0.029 0.971 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.270 0.730 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.109 0.891 36 H 0.067 0.933 37 H 0.127 0.873 38 H 0.126 0.874 39 H 0.128 0.872 40 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.362 -2.537 16.684 17.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.126 3.874 3 H 0.064 0.936 4 C -0.555 4.555 5 H 0.105 0.895 6 C -0.120 4.120 7 N -0.516 5.516 8 Si 0.693 3.307 9 H -0.196 1.196 10 H -0.207 1.207 11 H -0.186 1.186 12 O -0.257 6.257 13 C 0.310 3.690 14 O -0.410 6.410 15 C -0.011 4.011 16 C -0.195 4.195 17 C -0.180 4.180 18 C -0.011 4.011 19 O -0.232 6.232 20 C 0.092 3.908 21 C -0.179 4.179 22 C -0.103 4.103 23 C -0.168 4.168 24 C -0.085 4.085 25 C -0.160 4.160 26 H 0.048 0.952 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.097 0.903 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.127 0.873 36 H 0.085 0.915 37 H 0.145 0.855 38 H 0.144 0.856 39 H 0.146 0.854 40 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 2.473 -2.100 16.532 16.847 hybrid contribution -0.225 1.213 -0.342 1.280 sum 2.248 -0.887 16.190 16.370 Atomic orbital electron populations 1.22234 0.97516 1.01614 0.99634 1.21048 0.91458 0.94228 0.80646 0.93610 1.20758 1.45508 0.96237 0.92955 0.89546 1.24883 0.93481 0.98451 0.95218 1.69842 1.43840 1.36203 1.01684 0.87004 0.79958 0.86017 0.77753 1.19573 1.20668 1.18573 1.86620 1.75167 1.43303 1.20639 1.23053 0.74315 0.85815 0.85785 1.90578 1.49080 1.16801 1.84580 1.19344 0.93773 0.96169 0.91804 1.21939 0.97388 0.97835 1.02339 1.22213 1.02861 0.98135 0.94751 1.23020 0.81299 1.00510 0.96280 1.85953 1.29772 1.70352 1.37157 1.18626 0.94056 0.92663 0.85498 1.20468 0.96135 1.01725 0.99584 1.20979 0.98907 0.97384 0.92985 1.21147 0.93317 1.02186 1.00120 1.21787 0.98888 0.92578 0.95258 1.19380 0.94291 1.05142 0.97193 0.95239 0.92003 0.92326 0.91948 0.91442 0.91634 0.90350 0.89242 0.89079 0.87254 0.91478 0.85529 0.85608 0.85428 0.82368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.32 9.53 37.16 0.35 -2.96 16 2 C 0.18 4.39 2.22 -27.88 -0.06 4.33 16 3 H 0.05 1.20 4.31 -51.93 -0.22 0.98 16 4 C -0.52 -14.24 9.25 -34.44 -0.32 -14.56 16 5 H 0.09 2.53 8.06 -52.48 -0.42 2.11 16 6 C 0.08 2.37 5.47 -17.82 -0.10 2.27 16 7 N -0.88 -25.70 13.96 55.43 0.77 -24.93 16 8 Si 0.87 21.44 26.99 -169.99 -4.59 16.85 16 9 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.26 -6.32 6.82 56.52 0.39 -5.94 16 12 O -0.34 -7.54 6.87 -39.25 -0.27 -7.81 16 13 C 0.47 9.48 6.32 36.00 0.23 9.71 16 14 O -0.52 -11.79 15.00 -18.75 -0.28 -12.07 16 15 C -0.01 -0.15 0.61 -156.74 -0.10 -0.25 16 16 C -0.14 -1.76 8.17 37.16 0.30 -1.45 16 17 C -0.14 -1.91 4.39 -26.48 -0.12 -2.02 16 18 C 0.06 0.69 6.96 37.37 0.26 0.95 16 19 O -0.32 -4.42 10.27 -19.23 -0.20 -4.62 16 20 C 0.14 2.08 6.47 -39.20 -0.25 1.82 16 21 C -0.16 -2.21 9.94 -39.34 -0.39 -2.60 16 22 C -0.08 -1.13 10.04 -39.66 -0.40 -1.53 16 23 C -0.15 -2.30 10.04 -39.61 -0.40 -2.70 16 24 C -0.07 -1.18 8.96 -39.54 -0.35 -1.53 16 25 C -0.16 -2.61 4.70 -104.44 -0.49 -3.10 16 26 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.06 1.33 8.14 -51.92 -0.42 0.91 16 28 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 29 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 30 H 0.07 0.71 6.66 -51.93 -0.35 0.36 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.08 1.06 8.09 -51.93 -0.42 0.64 16 33 H 0.09 1.39 7.72 -51.93 -0.40 0.98 16 34 H 0.09 1.06 8.10 -51.93 -0.42 0.64 16 35 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.07 0.63 6.57 -51.93 -0.34 0.29 16 37 H 0.13 1.47 8.06 -52.48 -0.42 1.04 16 38 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 39 H 0.13 1.82 8.06 -52.48 -0.42 1.40 16 40 H 0.16 3.07 5.32 -52.48 -0.28 2.79 16 LS Contribution 325.21 15.07 4.90 4.90 Total: -1.00 -31.22 325.21 -6.88 -38.10 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -5.39 Total: 3.21 kcal Atomic # 6 Polarization: -11.79 SS G_CDS: -1.83 Total: -13.62 kcal Atomic # 7 Polarization: -25.70 SS G_CDS: 0.77 Total: -24.93 kcal Atomic # 8 Polarization: -23.76 SS G_CDS: -0.75 Total: -24.51 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.59 Total: 16.85 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.22 -6.88 -38.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344515073.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.693 kcal (2) G-P(sol) polarization free energy of solvation -31.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds