Wall clock time and date at job start Tue Mar 31 2020 06:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47405 * 2 1 4 4 C 1.50703 * 109.47445 * 239.99475 * 2 1 3 5 5 H 1.08005 * 119.99921 * 275.00459 * 4 2 1 6 6 C 1.37871 * 119.99925 * 95.00076 * 4 2 1 7 7 N 1.31510 * 120.00269 * 184.91682 * 6 4 2 8 8 Si 1.86805 * 120.00173 * 4.91721 * 6 4 2 9 9 H 1.48506 * 109.46780 * 84.83231 * 8 6 4 10 10 H 1.48494 * 109.47088 * 204.83436 * 8 6 4 11 11 H 1.48497 * 109.47049 * 324.83483 * 8 6 4 12 12 O 1.45210 * 109.46894 * 119.99921 * 2 1 3 13 13 C 1.34229 * 116.99751 * 269.99921 * 12 2 1 14 14 O 1.20827 * 119.99896 * 0.02562 * 13 12 2 15 15 C 1.50699 * 120.00040 * 180.02562 * 13 12 2 16 16 C 1.53005 * 109.40238 * 300.09982 * 15 13 12 17 17 C 1.53075 * 109.43864 * 180.20597 * 15 13 12 18 18 C 1.53402 * 108.29594 * 191.65875 * 17 15 13 19 19 O 1.42827 * 108.40140 * 64.65850 * 18 17 15 20 20 C 1.35838 * 117.86774 * 310.82101 * 19 18 17 21 21 C 1.39146 * 118.50993 * 197.07982 * 20 19 18 22 22 C 1.37967 * 120.21980 * 180.54195 * 21 20 19 23 23 C 1.38296 * 119.95422 * 359.95622 * 22 21 20 24 24 C 1.38101 * 119.98398 * 359.90961 * 23 22 21 25 25 C 1.38370 * 121.80113 * 17.40104 * 20 19 18 26 26 H 1.08999 * 109.47341 * 295.04257 * 1 2 3 27 27 H 1.09008 * 109.46510 * 55.03490 * 1 2 3 28 28 H 1.09000 * 109.47713 * 175.03371 * 1 2 3 29 29 H 0.97000 * 120.00416 * 180.02562 * 7 6 4 30 30 H 1.09000 * 109.47227 * 179.89810 * 16 15 13 31 31 H 1.09002 * 109.47006 * 299.89965 * 16 15 13 32 32 H 1.09000 * 109.47231 * 59.89488 * 16 15 13 33 33 H 1.08999 * 109.69207 * 311.36197 * 17 15 13 34 34 H 1.09001 * 109.69792 * 71.91928 * 17 15 13 35 35 H 1.09003 * 109.67539 * 184.38394 * 18 17 15 36 36 H 1.08997 * 109.68045 * 304.89043 * 18 17 15 37 37 H 1.08004 * 119.88926 * 0.50985 * 21 20 19 38 38 H 1.07995 * 120.02739 * 179.97438 * 22 21 20 39 39 H 1.08005 * 120.00271 * 179.97438 * 23 22 21 40 40 H 1.08007 * 119.84073 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.1355 -1.7856 -1.2289 6 6 2.3603 0.0119 -2.3580 7 7 2.7060 -0.6134 -3.4621 8 14 2.3136 1.8789 -2.3175 9 1 3.5992 2.3947 -1.7822 10 1 2.1058 2.3987 -3.6929 11 1 1.1987 2.3274 -1.4452 12 8 2.0139 -0.6845 1.1857 13 6 2.2170 0.0640 2.2812 14 8 1.9973 1.2517 2.2506 15 6 2.7192 -0.5769 3.5493 16 6 1.7243 -1.6454 4.0072 17 6 2.8585 0.4895 4.6385 18 6 3.6380 -0.1190 5.8113 19 8 4.9602 -0.4229 5.3646 20 6 5.0947 -1.1153 4.2038 21 6 6.3141 -1.7290 3.9340 22 6 6.4931 -2.4319 2.7604 23 6 5.4578 -2.5285 1.8486 24 6 4.2454 -1.9231 2.1143 25 6 4.0596 -1.2171 3.2912 26 1 -0.3634 0.4350 0.9310 27 1 -0.3633 0.5890 -0.8423 28 1 -0.3634 -1.0238 -0.0890 29 1 2.9371 -0.1051 -4.2553 30 1 2.0873 -2.1110 4.9234 31 1 0.7550 -1.1831 4.1939 32 1 1.6218 -2.4032 3.2304 33 1 3.4002 1.3491 4.2438 34 1 1.8701 0.8014 4.9759 35 1 3.6833 0.5965 6.6324 36 1 3.1444 -1.0312 6.1462 37 1 7.1232 -1.6543 4.6454 38 1 7.4409 -2.9066 2.5540 39 1 5.5973 -3.0782 0.9294 40 1 3.4382 -2.0004 1.4007 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344515073.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:55 Heat of formation + Delta-G solvation = -123.480704 kcal Electronic energy + Delta-G solvation = -24180.262783 eV Core-core repulsion = 20731.345113 eV Total energy + Delta-G solvation = -3448.917669 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.47239 -40.93104 -38.50207 -37.82815 -36.42169 -35.16766 -32.62069 -31.63055 -31.26063 -29.42933 -27.49143 -26.39344 -24.98402 -23.99616 -23.04601 -21.81443 -20.30273 -19.39020 -19.06028 -18.11044 -17.78884 -17.36975 -17.12387 -16.72245 -16.17542 -15.90407 -15.24926 -14.96755 -14.83565 -14.63967 -14.55638 -14.39738 -14.25955 -13.57487 -13.52312 -13.30861 -13.14112 -13.04132 -12.92044 -12.81662 -12.66434 -12.32816 -12.03447 -12.01310 -11.72401 -11.61049 -11.47718 -11.23066 -11.15758 -10.90072 -9.80210 -9.16147 -8.49395 -6.57582 0.26885 0.46095 1.18154 1.21331 1.24505 1.33460 1.81381 2.15601 2.33636 2.78865 2.89431 3.30171 3.42075 3.65423 3.79542 3.94282 4.08829 4.19795 4.23883 4.30031 4.46016 4.48893 4.54325 4.55551 4.57177 4.61247 4.72522 4.74960 4.85744 4.89175 4.94547 5.11067 5.20046 5.27704 5.33130 5.36937 5.49389 5.61563 5.66764 5.84376 6.11864 6.43701 6.50358 6.82875 7.09514 8.65561 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.018161 B = 0.006015 C = 0.005196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.360262 B = 4653.906865 C = 5387.669983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.179 3.821 3 H 0.031 0.969 4 C -0.524 4.524 5 H 0.053 0.947 6 C 0.040 3.960 7 N -0.919 5.919 8 Si 0.920 3.080 9 H -0.275 1.275 10 H -0.265 1.265 11 H -0.252 1.252 12 O -0.345 6.345 13 C 0.461 3.539 14 O -0.547 6.547 15 C -0.007 4.007 16 C -0.134 4.134 17 C -0.140 4.140 18 C 0.064 3.936 19 O -0.323 6.323 20 C 0.132 3.868 21 C -0.159 4.159 22 C -0.075 4.075 23 C -0.165 4.165 24 C -0.095 4.095 25 C -0.174 4.174 26 H 0.046 0.954 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.275 0.725 30 H 0.097 0.903 31 H 0.078 0.922 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.110 0.890 35 H 0.144 0.856 36 H 0.090 0.910 37 H 0.155 0.845 38 H 0.161 0.839 39 H 0.128 0.872 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.810 -1.946 19.543 19.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.126 3.874 3 H 0.048 0.952 4 C -0.561 4.561 5 H 0.071 0.929 6 C -0.162 4.162 7 N -0.556 5.556 8 Si 0.743 3.257 9 H -0.201 1.201 10 H -0.189 1.189 11 H -0.176 1.176 12 O -0.261 6.261 13 C 0.306 3.694 14 O -0.438 6.438 15 C -0.008 4.008 16 C -0.191 4.191 17 C -0.178 4.178 18 C -0.010 4.010 19 O -0.237 6.237 20 C 0.087 3.913 21 C -0.177 4.177 22 C -0.093 4.093 23 C -0.183 4.183 24 C -0.113 4.113 25 C -0.175 4.175 26 H 0.065 0.935 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.115 0.885 31 H 0.097 0.903 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.128 0.872 35 H 0.162 0.838 36 H 0.108 0.892 37 H 0.173 0.827 38 H 0.178 0.822 39 H 0.146 0.854 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 2.908 -1.519 19.406 19.682 hybrid contribution -0.313 0.959 -1.153 1.532 sum 2.596 -0.560 18.253 18.445 Atomic orbital electron populations 1.22131 0.95265 1.02330 1.00628 1.20856 0.93064 0.92845 0.80685 0.95162 1.20859 1.45601 0.94946 0.94708 0.92870 1.25549 0.93263 1.02560 0.94806 1.69937 1.45313 1.37957 1.02443 0.86155 0.79863 0.81025 0.78612 1.20073 1.18929 1.17626 1.86631 1.75440 1.43228 1.20786 1.24084 0.73328 0.85628 0.86374 1.90550 1.50310 1.17944 1.85045 1.19531 0.94088 0.97454 0.89759 1.21968 0.97384 0.96714 1.03033 1.22257 1.04145 0.96537 0.94823 1.23348 0.79743 1.02282 0.95641 1.85953 1.31554 1.69928 1.36261 1.18790 0.94036 0.92633 0.85813 1.20876 0.96306 1.00601 0.99948 1.21320 0.99383 0.96529 0.92026 1.21298 0.93520 1.02502 1.01013 1.21635 0.99074 0.94827 0.95772 1.19441 0.95144 1.05533 0.97356 0.93450 0.91847 0.91650 0.91494 0.88472 0.90289 0.91853 0.91829 0.87167 0.83801 0.89173 0.82747 0.82170 0.85379 0.85492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.33 9.53 71.98 0.69 -5.64 16 2 C 0.18 8.99 2.22 29.85 0.07 9.05 16 3 H 0.03 1.62 4.31 -2.39 -0.01 1.61 16 4 C -0.52 -30.03 9.25 25.60 0.24 -29.79 16 5 H 0.05 3.32 8.06 -2.91 -0.02 3.30 16 6 C 0.04 2.28 5.47 84.65 0.46 2.74 16 7 N -0.92 -55.24 13.96 21.44 0.30 -54.94 16 8 Si 0.92 44.68 26.99 68.60 1.85 46.53 16 9 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 10 H -0.26 -12.06 7.11 99.48 0.71 -11.35 16 11 H -0.25 -11.80 6.82 99.48 0.68 -11.12 16 12 O -0.34 -15.78 6.87 -51.40 -0.35 -16.13 16 13 C 0.46 18.90 6.32 71.24 0.45 19.35 16 14 O -0.55 -24.92 15.00 21.96 0.33 -24.59 16 15 C -0.01 -0.22 0.61 -53.63 -0.03 -0.25 16 16 C -0.13 -3.19 8.17 71.98 0.59 -2.61 16 17 C -0.14 -3.46 4.39 30.75 0.14 -3.32 16 18 C 0.06 1.14 6.96 72.12 0.50 1.65 16 19 O -0.32 -7.94 10.27 -91.73 -0.94 -8.89 16 20 C 0.13 3.76 6.47 22.52 0.15 3.91 16 21 C -0.16 -3.94 9.94 22.42 0.22 -3.72 16 22 C -0.07 -1.85 10.04 22.22 0.22 -1.63 16 23 C -0.17 -5.15 10.04 22.25 0.22 -4.92 16 24 C -0.10 -3.43 8.96 22.30 0.20 -3.23 16 25 C -0.17 -5.62 4.70 -19.75 -0.09 -5.71 16 26 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.06 2.70 8.14 -2.38 -0.02 2.68 16 28 H 0.06 2.70 8.14 -2.39 -0.02 2.68 16 29 H 0.28 15.37 8.31 -92.71 -0.77 14.60 16 30 H 0.10 1.73 6.66 -2.39 -0.02 1.71 16 31 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.06 1.70 8.09 -2.39 -0.02 1.68 16 33 H 0.06 1.91 7.72 -2.39 -0.02 1.89 16 34 H 0.11 2.26 8.10 -2.39 -0.02 2.24 16 35 H 0.14 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.09 1.25 6.57 -2.39 -0.02 1.23 16 37 H 0.15 2.95 8.06 -2.91 -0.02 2.92 16 38 H 0.16 2.79 8.06 -2.91 -0.02 2.77 16 39 H 0.13 3.82 8.06 -2.91 -0.02 3.79 16 40 H 0.13 5.33 5.32 -2.91 -0.02 5.31 16 Total: -1.00 -70.13 325.21 6.22 -63.91 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: 1.02 Total: 18.24 kcal Atomic # 6 Polarization: -28.15 SS G_CDS: 4.02 Total: -24.13 kcal Atomic # 7 Polarization: -55.24 SS G_CDS: 0.30 Total: -54.94 kcal Atomic # 8 Polarization: -48.64 SS G_CDS: -0.97 Total: -49.60 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 1.85 Total: 46.53 kcal Total: -70.13 6.22 -63.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344515073.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.573 kcal (2) G-P(sol) polarization free energy of solvation -70.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds