Wall clock time and date at job start Tue Mar 31 2020 06:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46969 * 2 1 4 4 C 1.50695 * 109.47065 * 120.00304 * 2 1 3 5 5 H 1.08003 * 120.00156 * 120.00615 * 4 2 1 6 6 C 1.37871 * 120.00318 * 299.99452 * 4 2 1 7 7 N 1.31513 * 119.99731 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00302 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47070 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.47305 * 120.00395 * 8 6 4 11 11 H 1.48495 * 109.47669 * 240.00388 * 8 6 4 12 12 O 1.45202 * 109.46662 * 240.00181 * 2 1 3 13 13 C 1.34230 * 116.99836 * 90.00373 * 12 2 1 14 14 O 1.20833 * 119.99930 * 359.97438 * 13 12 2 15 15 C 1.50697 * 120.00262 * 180.27336 * 13 12 2 16 16 C 1.53008 * 109.43807 * 59.71797 * 15 13 12 17 17 C 1.53076 * 109.44056 * 179.63497 * 15 13 12 18 18 C 1.53408 * 108.28871 * 168.25325 * 17 15 13 19 19 O 1.42832 * 108.37314 * 295.24935 * 18 17 15 20 20 C 1.35853 * 117.85844 * 49.15393 * 19 18 17 21 21 C 1.39137 * 118.49728 * 162.97580 * 20 19 18 22 22 C 1.37980 * 120.21552 * 179.82088 * 21 20 19 23 23 C 1.38288 * 119.95663 * 359.97438 * 22 21 20 24 24 C 1.38105 * 119.98126 * 0.07781 * 23 22 21 25 25 C 1.38312 * 121.78937 * 342.89081 * 20 19 18 26 26 H 1.09000 * 109.46969 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47394 * 299.99340 * 1 2 3 28 28 H 1.09001 * 109.47630 * 60.00043 * 1 2 3 29 29 H 0.97006 * 119.99920 * 179.97438 * 7 6 4 30 30 H 1.09006 * 109.46613 * 60.00010 * 16 15 13 31 31 H 1.09000 * 109.47000 * 180.02562 * 16 15 13 32 32 H 1.08996 * 109.47096 * 300.00633 * 16 15 13 33 33 H 1.08993 * 109.69875 * 287.95489 * 17 15 13 34 34 H 1.09001 * 109.69487 * 48.51390 * 17 15 13 35 35 H 1.08999 * 109.68858 * 54.97455 * 18 17 15 36 36 H 1.09004 * 109.68067 * 175.49857 * 18 17 15 37 37 H 1.07997 * 119.89516 * 359.80178 * 21 20 19 38 38 H 1.07997 * 120.02110 * 179.97438 * 22 21 20 39 39 H 1.08000 * 120.00901 * 180.09995 * 23 22 21 40 40 H 1.07999 * 119.83711 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6994 -0.2395 2.4827 7 7 0.9429 0.8296 2.6034 8 14 2.3226 -1.1197 4.0078 9 1 3.1484 -2.2858 3.6036 10 1 3.1474 -0.1860 4.8160 11 1 1.1680 -1.5868 4.8164 12 8 2.0139 -0.6845 -1.1856 13 6 2.2170 0.0641 -2.2811 14 8 1.9973 1.2519 -2.2505 15 6 2.7127 -0.5779 -3.5512 16 6 1.7147 -1.6451 -4.0054 17 6 2.8497 0.4881 -4.6411 18 6 3.6251 -0.1215 -5.8161 19 8 4.9488 -0.4243 -5.3732 20 6 5.0872 -1.1148 -4.2115 21 6 6.3079 -1.7266 -3.9442 22 6 6.4886 -2.4338 -2.7733 23 6 5.4541 -2.5353 -1.8612 24 6 4.2407 -1.9302 -2.1238 25 6 4.0533 -1.2200 -3.2988 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 0.7084 1.1607 3.4845 30 1 0.7448 -1.1817 -4.1866 31 1 2.0729 -2.1101 -4.9238 32 1 1.6155 -2.4037 -3.2291 33 1 1.8606 0.8003 -4.9761 34 1 3.3928 1.3476 -4.2481 35 1 3.1310 -1.0347 -6.1478 36 1 3.6669 0.5928 -6.6384 37 1 7.1166 -1.6479 -4.6556 38 1 7.4373 -2.9078 -2.5692 39 1 5.5951 -3.0873 -0.9437 40 1 3.4342 -2.0113 -1.4101 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344515074.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:58 Heat of formation + Delta-G solvation = -106.902953 kcal Electronic energy + Delta-G solvation = -24052.822117 eV Core-core repulsion = 20604.623313 eV Total energy + Delta-G solvation = -3448.198804 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.17455 -39.32279 -37.39638 -36.05692 -35.04653 -33.27121 -30.66966 -30.14057 -29.59236 -28.31561 -25.37374 -25.12850 -23.79113 -22.73792 -21.62400 -20.20470 -18.83600 -17.92967 -16.99353 -16.57586 -16.32553 -15.99041 -15.45575 -15.11641 -14.81218 -14.51842 -14.08540 -13.69512 -13.48713 -13.20691 -13.07831 -12.49071 -12.33022 -12.17340 -12.04992 -11.85901 -11.69232 -11.35702 -11.21166 -11.09570 -10.96212 -10.83435 -10.62553 -10.52351 -10.32634 -10.23971 -9.62831 -9.58332 -8.92100 -8.63812 -8.51781 -8.04686 -6.21292 -4.28326 1.41698 1.61261 2.91348 3.21625 3.26475 3.29516 3.32868 3.50230 3.97945 4.30320 4.46648 4.61954 4.75800 4.98516 5.05704 5.12522 5.18391 5.29807 5.33131 5.48491 5.54532 5.56638 5.68801 5.75860 5.87306 5.97825 6.02195 6.22151 6.28168 6.47134 6.59941 6.69615 6.78977 6.85095 6.87386 6.96007 7.11980 7.50048 7.56508 7.68830 7.89356 8.10118 8.57742 8.83962 9.37303 10.86213 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.019141 B = 0.005496 C = 0.004565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.510693 B = 5093.453066 C = 6132.486699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.213 3.787 3 H 0.046 0.954 4 C -0.519 4.519 5 H 0.069 0.931 6 C 0.063 3.937 7 N -0.889 5.889 8 Si 0.910 3.090 9 H -0.270 1.270 10 H -0.282 1.282 11 H -0.281 1.281 12 O -0.349 6.349 13 C 0.469 3.531 14 O -0.515 6.515 15 C -0.010 4.010 16 C -0.138 4.138 17 C -0.142 4.142 18 C 0.064 3.936 19 O -0.318 6.318 20 C 0.138 3.862 21 C -0.160 4.160 22 C -0.085 4.085 23 C -0.152 4.152 24 C -0.069 4.069 25 C -0.156 4.156 26 H 0.037 0.963 27 H 0.099 0.901 28 H 0.015 0.985 29 H 0.266 0.734 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.067 0.933 36 H 0.110 0.890 37 H 0.127 0.873 38 H 0.126 0.874 39 H 0.126 0.874 40 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.579 -5.973 -14.458 16.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.161 3.839 3 H 0.063 0.937 4 C -0.557 4.557 5 H 0.088 0.912 6 C -0.139 4.139 7 N -0.526 5.526 8 Si 0.737 3.263 9 H -0.194 1.194 10 H -0.208 1.208 11 H -0.207 1.207 12 O -0.266 6.266 13 C 0.311 3.689 14 O -0.404 6.404 15 C -0.011 4.011 16 C -0.195 4.195 17 C -0.180 4.180 18 C -0.011 4.011 19 O -0.232 6.232 20 C 0.093 3.907 21 C -0.179 4.179 22 C -0.103 4.103 23 C -0.171 4.171 24 C -0.086 4.086 25 C -0.157 4.157 26 H 0.056 0.944 27 H 0.118 0.882 28 H 0.034 0.966 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.096 0.904 33 H 0.110 0.890 34 H 0.108 0.892 35 H 0.085 0.915 36 H 0.128 0.872 37 H 0.145 0.855 38 H 0.143 0.857 39 H 0.144 0.856 40 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 5.546 -5.431 -14.375 16.337 hybrid contribution -0.063 -0.135 1.047 1.058 sum 5.484 -5.567 -13.328 15.450 Atomic orbital electron populations 1.22158 0.97558 1.00097 1.01378 1.20674 0.91374 0.93990 0.77833 0.93664 1.21031 1.32432 1.13423 0.88798 0.91234 1.24880 0.94912 0.95071 0.99080 1.69908 1.36069 1.22581 1.24083 0.86242 0.78647 0.79521 0.81881 1.19423 1.20761 1.20724 1.86426 1.75425 1.43429 1.21300 1.22876 0.74569 0.85741 0.85713 1.90595 1.48580 1.16729 1.84532 1.19336 0.93649 0.96127 0.91982 1.21935 0.97465 0.97853 1.02229 1.22211 1.02935 0.98144 0.94662 1.23036 0.81183 1.00525 0.96379 1.85955 1.29823 1.70452 1.36997 1.18623 0.94010 0.92552 0.85540 1.20470 0.96141 1.01651 0.99613 1.20959 0.98868 0.97429 0.93047 1.21108 0.93410 1.02409 1.00140 1.21774 0.98719 0.92719 0.95408 1.19401 0.94376 1.04817 0.97114 0.94394 0.88243 0.96628 0.92444 0.91571 0.91529 0.90427 0.89039 0.89181 0.91487 0.87213 0.85507 0.85651 0.85629 0.82541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.85 9.33 37.16 0.35 -3.50 16 2 C 0.21 5.62 2.56 -27.89 -0.07 5.55 16 3 H 0.05 1.34 7.16 -51.93 -0.37 0.97 16 4 C -0.52 -14.19 8.90 -34.44 -0.31 -14.50 16 5 H 0.07 1.86 7.81 -52.48 -0.41 1.44 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -25.05 11.32 55.43 0.63 -24.42 16 8 Si 0.91 20.83 29.54 -169.99 -5.02 15.81 16 9 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 12 O -0.35 -7.99 6.88 -39.26 -0.27 -8.26 16 13 C 0.47 9.84 6.33 36.00 0.23 10.07 16 14 O -0.52 -12.23 15.00 -18.76 -0.28 -12.51 16 15 C -0.01 -0.16 0.61 -156.74 -0.10 -0.25 16 16 C -0.14 -1.82 8.17 37.16 0.30 -1.52 16 17 C -0.14 -1.95 4.40 -26.48 -0.12 -2.07 16 18 C 0.06 0.70 6.96 37.37 0.26 0.96 16 19 O -0.32 -4.41 10.27 -19.28 -0.20 -4.61 16 20 C 0.14 2.07 6.47 -39.22 -0.25 1.82 16 21 C -0.16 -2.16 9.94 -39.34 -0.39 -2.55 16 22 C -0.08 -1.09 10.04 -39.66 -0.40 -1.49 16 23 C -0.15 -2.24 10.04 -39.61 -0.40 -2.64 16 24 C -0.07 -1.17 8.95 -39.51 -0.35 -1.52 16 25 C -0.16 -2.54 4.70 -104.44 -0.49 -3.03 16 26 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 27 H 0.10 2.67 6.07 -51.93 -0.32 2.35 16 28 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.07 0.72 6.65 -51.93 -0.35 0.37 16 32 H 0.08 1.08 8.09 -51.93 -0.42 0.66 16 33 H 0.09 1.12 8.10 -51.93 -0.42 0.70 16 34 H 0.09 1.42 7.71 -51.93 -0.40 1.02 16 35 H 0.07 0.64 6.56 -51.93 -0.34 0.30 16 36 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 38 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 39 H 0.13 1.65 8.06 -52.49 -0.42 1.23 16 40 H 0.16 2.97 5.34 -52.49 -0.28 2.69 16 LS Contribution 325.56 15.07 4.91 4.91 Total: -1.00 -30.76 325.56 -7.47 -38.22 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -5.40 Total: 3.92 kcal Atomic # 6 Polarization: -11.23 SS G_CDS: -1.83 Total: -13.06 kcal Atomic # 7 Polarization: -25.05 SS G_CDS: 0.63 Total: -24.42 kcal Atomic # 8 Polarization: -24.64 SS G_CDS: -0.75 Total: -25.38 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.76 -7.47 -38.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344515074.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.681 kcal (2) G-P(sol) polarization free energy of solvation -30.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds