Wall clock time and date at job start Tue Mar 31 2020 06:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46969 * 2 1 4 4 C 1.50695 * 109.47065 * 120.00304 * 2 1 3 5 5 H 1.08003 * 120.00156 * 120.00615 * 4 2 1 6 6 C 1.37871 * 120.00318 * 299.99452 * 4 2 1 7 7 N 1.31513 * 119.99731 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00302 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47070 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.47305 * 120.00395 * 8 6 4 11 11 H 1.48495 * 109.47669 * 240.00388 * 8 6 4 12 12 O 1.45202 * 109.46662 * 240.00181 * 2 1 3 13 13 C 1.34230 * 116.99836 * 90.00373 * 12 2 1 14 14 O 1.20833 * 119.99930 * 359.97438 * 13 12 2 15 15 C 1.50697 * 120.00262 * 180.27336 * 13 12 2 16 16 C 1.53008 * 109.43807 * 59.71797 * 15 13 12 17 17 C 1.53076 * 109.44056 * 179.63497 * 15 13 12 18 18 C 1.53408 * 108.28871 * 168.25325 * 17 15 13 19 19 O 1.42832 * 108.37314 * 295.24935 * 18 17 15 20 20 C 1.35853 * 117.85844 * 49.15393 * 19 18 17 21 21 C 1.39137 * 118.49728 * 162.97580 * 20 19 18 22 22 C 1.37980 * 120.21552 * 179.82088 * 21 20 19 23 23 C 1.38288 * 119.95663 * 359.97438 * 22 21 20 24 24 C 1.38105 * 119.98126 * 0.07781 * 23 22 21 25 25 C 1.38312 * 121.78937 * 342.89081 * 20 19 18 26 26 H 1.09000 * 109.46969 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47394 * 299.99340 * 1 2 3 28 28 H 1.09001 * 109.47630 * 60.00043 * 1 2 3 29 29 H 0.97006 * 119.99920 * 179.97438 * 7 6 4 30 30 H 1.09006 * 109.46613 * 60.00010 * 16 15 13 31 31 H 1.09000 * 109.47000 * 180.02562 * 16 15 13 32 32 H 1.08996 * 109.47096 * 300.00633 * 16 15 13 33 33 H 1.08993 * 109.69875 * 287.95489 * 17 15 13 34 34 H 1.09001 * 109.69487 * 48.51390 * 17 15 13 35 35 H 1.08999 * 109.68858 * 54.97455 * 18 17 15 36 36 H 1.09004 * 109.68067 * 175.49857 * 18 17 15 37 37 H 1.07997 * 119.89516 * 359.80178 * 21 20 19 38 38 H 1.07997 * 120.02110 * 179.97438 * 22 21 20 39 39 H 1.08000 * 120.00901 * 180.09995 * 23 22 21 40 40 H 1.07999 * 119.83711 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6994 -0.2395 2.4827 7 7 0.9429 0.8296 2.6034 8 14 2.3226 -1.1197 4.0078 9 1 3.1484 -2.2858 3.6036 10 1 3.1474 -0.1860 4.8160 11 1 1.1680 -1.5868 4.8164 12 8 2.0139 -0.6845 -1.1856 13 6 2.2170 0.0641 -2.2811 14 8 1.9973 1.2519 -2.2505 15 6 2.7127 -0.5779 -3.5512 16 6 1.7147 -1.6451 -4.0054 17 6 2.8497 0.4881 -4.6411 18 6 3.6251 -0.1215 -5.8161 19 8 4.9488 -0.4243 -5.3732 20 6 5.0872 -1.1148 -4.2115 21 6 6.3079 -1.7266 -3.9442 22 6 6.4886 -2.4338 -2.7733 23 6 5.4541 -2.5353 -1.8612 24 6 4.2407 -1.9302 -2.1238 25 6 4.0533 -1.2200 -3.2988 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 0.7084 1.1607 3.4845 30 1 0.7448 -1.1817 -4.1866 31 1 2.0729 -2.1101 -4.9238 32 1 1.6155 -2.4037 -3.2291 33 1 1.8606 0.8003 -4.9761 34 1 3.3928 1.3476 -4.2481 35 1 3.1310 -1.0347 -6.1478 36 1 3.6669 0.5928 -6.6384 37 1 7.1166 -1.6479 -4.6556 38 1 7.4373 -2.9078 -2.5692 39 1 5.5951 -3.0873 -0.9437 40 1 3.4342 -2.0113 -1.4101 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344515074.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:58 Heat of formation + Delta-G solvation = -123.608008 kcal Electronic energy + Delta-G solvation = -24053.546502 eV Core-core repulsion = 20604.623313 eV Total energy + Delta-G solvation = -3448.923190 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.45143 -40.88477 -38.48961 -37.78536 -36.41302 -35.31616 -31.90625 -31.47664 -31.24269 -29.42407 -27.48428 -26.38432 -24.98670 -24.02437 -23.15406 -21.86812 -20.18494 -19.20351 -18.80474 -18.08122 -17.67933 -17.28677 -17.08523 -16.66342 -16.33706 -15.88934 -15.22896 -14.99196 -14.86229 -14.55193 -14.39542 -14.22816 -13.83675 -13.57913 -13.31041 -13.19430 -13.12442 -12.97135 -12.83436 -12.81493 -12.47104 -12.34017 -12.14147 -12.03015 -11.72712 -11.60856 -11.57350 -11.20965 -10.96529 -10.62610 -9.78793 -9.15166 -8.30432 -6.46876 0.28276 0.47379 1.23949 1.40457 1.40963 1.54587 1.87940 2.33124 2.39304 2.82475 3.00721 3.30170 3.43453 3.65417 3.82915 3.93707 4.10772 4.24340 4.29071 4.45777 4.49436 4.50736 4.55168 4.60311 4.71224 4.74260 4.75080 4.81619 4.87681 4.94305 5.10029 5.13206 5.20683 5.35435 5.45789 5.53218 5.59847 5.65738 5.85449 5.88435 6.04591 6.43955 6.57633 6.89207 7.24584 8.77697 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.019141 B = 0.005496 C = 0.004565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.510693 B = 5093.453066 C = 6132.486699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.216 3.784 3 H 0.000 1.000 4 C -0.541 4.541 5 H 0.070 0.930 6 C 0.016 3.984 7 N -0.918 5.918 8 Si 0.981 3.019 9 H -0.261 1.261 10 H -0.278 1.278 11 H -0.271 1.271 12 O -0.347 6.347 13 C 0.461 3.539 14 O -0.550 6.550 15 C -0.006 4.006 16 C -0.134 4.134 17 C -0.141 4.141 18 C 0.066 3.934 19 O -0.323 6.323 20 C 0.131 3.869 21 C -0.159 4.159 22 C -0.074 4.074 23 C -0.162 4.162 24 C -0.096 4.096 25 C -0.173 4.173 26 H 0.048 0.952 27 H 0.080 0.920 28 H 0.021 0.979 29 H 0.270 0.730 30 H 0.073 0.927 31 H 0.099 0.901 32 H 0.064 0.936 33 H 0.106 0.894 34 H 0.061 0.939 35 H 0.091 0.909 36 H 0.144 0.856 37 H 0.154 0.846 38 H 0.163 0.837 39 H 0.135 0.865 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.062 -7.640 -15.945 19.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.163 3.837 3 H 0.018 0.982 4 C -0.579 4.579 5 H 0.088 0.912 6 C -0.184 4.184 7 N -0.557 5.557 8 Si 0.804 3.196 9 H -0.184 1.184 10 H -0.204 1.204 11 H -0.197 1.197 12 O -0.263 6.263 13 C 0.305 3.695 14 O -0.442 6.442 15 C -0.007 4.007 16 C -0.191 4.191 17 C -0.179 4.179 18 C -0.008 4.008 19 O -0.237 6.237 20 C 0.086 3.914 21 C -0.178 4.178 22 C -0.092 4.092 23 C -0.180 4.180 24 C -0.114 4.114 25 C -0.174 4.174 26 H 0.067 0.933 27 H 0.098 0.902 28 H 0.040 0.960 29 H 0.079 0.921 30 H 0.092 0.908 31 H 0.117 0.883 32 H 0.083 0.917 33 H 0.124 0.876 34 H 0.080 0.920 35 H 0.109 0.891 36 H 0.162 0.838 37 H 0.172 0.828 38 H 0.180 0.820 39 H 0.153 0.847 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 7.027 -7.108 -15.888 18.770 hybrid contribution -0.488 0.436 1.449 1.590 sum 6.539 -6.672 -14.439 17.198 Atomic orbital electron populations 1.21971 0.96690 1.00481 1.00709 1.20356 0.92030 0.91871 0.79433 0.98181 1.21285 1.33142 1.13753 0.89688 0.91221 1.25821 0.94741 0.95645 1.02159 1.70030 1.36742 1.23778 1.25101 0.85162 0.78380 0.78495 0.77573 1.18444 1.20358 1.19653 1.86476 1.75537 1.43103 1.21165 1.24090 0.73372 0.85544 0.86480 1.90566 1.50144 1.18330 1.85121 1.19505 0.94363 0.97313 0.89494 1.21963 0.97215 0.96744 1.03142 1.22251 1.04004 0.96626 0.94978 1.23329 0.79722 1.02242 0.95539 1.85952 1.31372 1.70147 1.36257 1.18808 0.94108 0.92699 0.85806 1.20886 0.96128 1.00590 1.00147 1.21341 0.99518 0.96402 0.91955 1.21314 0.93188 1.02350 1.01174 1.21649 0.99169 0.94880 0.95711 1.19433 0.94901 1.05472 0.97633 0.93300 0.90154 0.95954 0.92061 0.90778 0.88270 0.91711 0.87581 0.91976 0.89136 0.83839 0.82833 0.81984 0.84694 0.85489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.30 9.33 71.98 0.67 -6.63 16 2 C 0.22 11.99 2.56 29.85 0.08 12.07 16 3 H 0.00 0.02 7.16 -2.39 -0.02 0.01 16 4 C -0.54 -30.62 8.90 25.60 0.23 -30.39 16 5 H 0.07 3.84 7.81 -2.91 -0.02 3.81 16 6 C 0.02 0.87 5.30 84.65 0.45 1.32 16 7 N -0.92 -53.13 11.32 21.44 0.24 -52.89 16 8 Si 0.98 42.91 29.54 68.60 2.03 44.93 16 9 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 10 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 11 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 12 O -0.35 -16.72 6.88 -51.41 -0.35 -17.07 16 13 C 0.46 20.23 6.33 71.23 0.45 20.68 16 14 O -0.55 -27.61 15.00 21.94 0.33 -27.28 16 15 C -0.01 -0.18 0.61 -53.62 -0.03 -0.21 16 16 C -0.13 -3.39 8.17 71.98 0.59 -2.81 16 17 C -0.14 -3.75 4.40 30.76 0.14 -3.62 16 18 C 0.07 1.25 6.96 72.12 0.50 1.75 16 19 O -0.32 -8.09 10.27 -91.90 -0.94 -9.03 16 20 C 0.13 3.71 6.47 22.50 0.15 3.85 16 21 C -0.16 -3.82 9.94 22.42 0.22 -3.60 16 22 C -0.07 -1.71 10.04 22.22 0.22 -1.49 16 23 C -0.16 -4.65 10.04 22.25 0.22 -4.42 16 24 C -0.10 -3.34 8.95 22.32 0.20 -3.14 16 25 C -0.17 -5.61 4.70 -19.75 -0.09 -5.70 16 26 H 0.05 2.36 8.14 -2.39 -0.02 2.34 16 27 H 0.08 4.48 6.07 -2.39 -0.01 4.47 16 28 H 0.02 1.06 8.14 -2.39 -0.02 1.05 16 29 H 0.27 14.58 8.31 -92.70 -0.77 13.81 16 30 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 31 H 0.10 1.86 6.65 -2.39 -0.02 1.84 16 32 H 0.06 1.81 8.09 -2.39 -0.02 1.79 16 33 H 0.11 2.45 8.10 -2.39 -0.02 2.43 16 34 H 0.06 2.00 7.71 -2.39 -0.02 1.98 16 35 H 0.09 1.34 6.56 -2.39 -0.02 1.32 16 36 H 0.14 1.78 8.14 -2.38 -0.02 1.76 16 37 H 0.15 2.84 8.06 -2.91 -0.02 2.82 16 38 H 0.16 2.49 8.06 -2.91 -0.02 2.47 16 39 H 0.14 3.47 8.06 -2.91 -0.02 3.45 16 40 H 0.13 5.11 5.34 -2.91 -0.02 5.10 16 Total: -1.00 -69.98 325.56 6.33 -63.65 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: 1.04 Total: 20.02 kcal Atomic # 6 Polarization: -26.32 SS G_CDS: 3.99 Total: -22.33 kcal Atomic # 7 Polarization: -53.13 SS G_CDS: 0.24 Total: -52.89 kcal Atomic # 8 Polarization: -52.41 SS G_CDS: -0.97 Total: -53.38 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.93 kcal Total: -69.98 6.33 -63.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344515074.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.957 kcal (2) G-P(sol) polarization free energy of solvation -69.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds