Wall clock time and date at job start Tue Mar 31 2020 06:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47026 * 2 1 4 4 H 1.09000 * 109.47244 * 304.99931 * 3 2 1 5 5 C 1.50699 * 109.47154 * 184.99977 * 3 2 1 6 6 H 1.08005 * 119.99928 * 239.99739 * 5 3 2 7 7 C 1.37873 * 120.00257 * 60.00042 * 5 3 2 8 8 N 1.31515 * 119.99804 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 120.00369 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47007 * 89.99642 * 9 7 5 11 11 H 1.48497 * 109.46765 * 209.99861 * 9 7 5 12 12 H 1.48502 * 109.46843 * 329.99959 * 9 7 5 13 13 O 1.45202 * 109.47384 * 64.99913 * 3 2 1 14 14 C 1.34715 * 117.00093 * 270.00326 * 13 3 2 15 15 O 1.21464 * 119.99889 * 359.97438 * 14 13 3 16 16 C 1.47724 * 119.99971 * 179.97438 * 14 13 3 17 17 C 1.39510 * 120.01789 * 359.97438 * 16 14 13 18 18 C 1.37931 * 119.69049 * 180.02562 * 17 16 14 19 19 C 1.38213 * 120.06184 * 0.06924 * 18 17 16 20 20 C 1.38769 * 120.62589 * 0.02562 * 19 18 17 21 21 C 1.37650 * 119.86179 * 359.83508 * 20 19 18 22 22 C 1.51198 * 121.50381 * 180.48198 * 21 20 19 23 23 C 1.52971 * 109.52158 * 343.07969 * 22 21 20 24 24 O 1.43215 * 108.62297 * 49.09435 * 23 22 21 25 25 C 1.42718 * 113.13420 * 289.29682 * 24 23 22 26 26 H 1.08998 * 109.47627 * 60.00122 * 1 2 3 27 27 H 1.09003 * 109.47325 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47380 * 299.99800 * 1 2 3 29 29 H 1.09001 * 109.47182 * 239.99697 * 2 1 3 30 30 H 1.09003 * 109.46972 * 119.99640 * 2 1 3 31 31 H 0.96998 * 120.00170 * 180.02562 * 8 7 5 32 32 H 1.07997 * 120.15655 * 0.05990 * 17 16 14 33 33 H 1.08000 * 119.96697 * 180.09088 * 18 17 16 34 34 H 1.08002 * 119.68861 * 179.97438 * 19 18 17 35 35 H 1.09007 * 109.68330 * 222.97825 * 22 21 20 36 36 H 1.09004 * 109.40916 * 103.01559 * 22 21 20 37 37 H 1.09002 * 109.64098 * 289.29956 * 23 22 21 38 38 H 1.09002 * 109.63932 * 168.88490 * 23 22 21 39 39 H 1.09002 * 109.33633 * 172.02227 * 25 24 23 40 40 H 1.08997 * 109.33386 * 291.69275 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5418 1.4443 -0.1238 6 1 4.1471 1.8890 0.6523 7 6 4.1432 0.8785 -1.2279 8 7 3.4062 0.3367 -2.1728 9 14 6.0050 0.8801 -1.3811 10 1 6.5538 -0.3519 -0.7597 11 1 6.3834 0.9215 -2.8164 12 1 6.5575 2.0721 -0.6888 13 8 1.6558 2.0917 1.2407 14 6 0.4683 2.7277 1.2560 15 8 -0.2269 2.7400 0.2601 16 6 0.0118 3.4102 2.4840 17 6 0.8098 3.3959 3.6283 18 6 0.3766 4.0348 4.7713 19 6 -0.8433 4.6845 4.7814 20 6 -1.6442 4.7020 3.6483 21 6 -1.2218 4.0704 2.5005 22 6 -2.0595 4.0754 1.2419 23 6 -3.4971 4.4690 1.5863 24 8 -3.4666 5.6518 2.3933 25 6 -2.9679 5.4193 3.7101 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8932 -0.5138 0.8900 31 1 3.8293 -0.0618 -2.9494 32 1 1.7625 2.8873 3.6189 33 1 0.9915 4.0278 5.6592 34 1 -1.1767 5.1825 5.6799 35 1 -2.0534 3.0822 0.7928 36 1 -1.6463 4.7945 0.5346 37 1 -3.9759 3.6607 2.1389 38 1 -4.0528 4.6654 0.6693 39 1 -2.8378 6.3737 4.2204 40 1 -3.6812 4.8085 4.2635 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344869140.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:55 Heat of formation + Delta-G solvation = -114.382964 kcal Electronic energy + Delta-G solvation = -23477.095788 eV Core-core repulsion = 20028.572627 eV Total energy + Delta-G solvation = -3448.523162 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.60849 -39.20468 -37.47131 -35.88278 -33.56296 -32.77226 -31.91484 -31.31502 -29.71719 -27.31141 -25.63550 -24.40929 -23.59012 -22.95314 -20.72143 -20.22371 -19.46000 -17.48989 -16.75675 -16.41497 -16.21597 -15.79229 -15.54285 -15.33205 -15.20615 -14.55830 -14.14964 -13.64514 -13.49424 -13.13982 -12.86156 -12.67621 -12.38693 -12.17230 -11.83183 -11.70444 -11.52609 -11.44077 -11.28953 -11.19544 -10.97445 -10.69248 -10.62230 -10.28942 -9.97146 -9.78369 -9.42624 -9.21981 -8.86813 -8.81172 -8.64471 -8.46773 -6.20397 -4.27488 0.87055 1.29222 3.02518 3.23275 3.28835 3.32236 3.59244 3.78614 3.89954 4.31537 4.53543 4.64720 4.86694 4.94278 5.11396 5.12090 5.17722 5.20161 5.29221 5.46213 5.59774 5.71071 5.86123 5.88694 5.95641 6.19994 6.23200 6.27235 6.32895 6.37554 6.42598 6.59616 6.81932 6.87608 6.94876 6.99284 7.14166 7.23466 7.59551 7.71388 7.91786 8.13405 8.60068 8.86250 9.37809 10.86383 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.024574 B = 0.004244 C = 0.003894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.131986 B = 6595.729949 C = 7189.094758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C 0.223 3.777 4 H 0.048 0.952 5 C -0.522 4.522 6 H 0.068 0.932 7 C 0.064 3.936 8 N -0.888 5.888 9 Si 0.911 3.089 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.272 1.272 13 O -0.350 6.350 14 C 0.496 3.504 15 O -0.508 6.508 16 C -0.116 4.116 17 C -0.058 4.058 18 C -0.138 4.138 19 C -0.086 4.086 20 C -0.143 4.143 21 C -0.012 4.012 22 C -0.121 4.121 23 C 0.055 3.945 24 O -0.378 6.378 25 C 0.107 3.893 26 H 0.053 0.947 27 H 0.033 0.967 28 H 0.031 0.969 29 H 0.109 0.891 30 H 0.041 0.959 31 H 0.266 0.734 32 H 0.142 0.858 33 H 0.130 0.870 34 H 0.126 0.874 35 H 0.117 0.883 36 H 0.092 0.908 37 H 0.053 0.947 38 H 0.100 0.900 39 H 0.103 0.897 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.735 6.664 12.334 17.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.174 4.174 3 C 0.170 3.830 4 H 0.066 0.934 5 C -0.560 4.560 6 H 0.086 0.914 7 C -0.139 4.139 8 N -0.525 5.525 9 Si 0.737 3.263 10 H -0.203 1.203 11 H -0.210 1.210 12 H -0.196 1.196 13 O -0.266 6.266 14 C 0.341 3.659 15 O -0.400 6.400 16 C -0.117 4.117 17 C -0.076 4.076 18 C -0.156 4.156 19 C -0.104 4.104 20 C -0.143 4.143 21 C -0.012 4.012 22 C -0.157 4.157 23 C -0.021 4.021 24 O -0.297 6.297 25 C 0.030 3.970 26 H 0.073 0.927 27 H 0.052 0.948 28 H 0.050 0.950 29 H 0.127 0.873 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.160 0.840 33 H 0.148 0.852 34 H 0.144 0.856 35 H 0.135 0.865 36 H 0.110 0.890 37 H 0.072 0.928 38 H 0.118 0.882 39 H 0.121 0.879 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.933 6.719 11.753 17.401 hybrid contribution 1.174 -0.423 -0.081 1.251 sum -9.759 6.296 11.672 16.466 Atomic orbital electron populations 1.21861 0.98406 0.99020 1.00702 1.22024 0.92639 0.99340 1.03378 1.20699 0.95030 0.88719 0.78519 0.93400 1.21034 0.89639 1.39021 1.06280 0.91356 1.24872 0.99217 0.94742 0.95025 1.69885 1.35379 1.37765 1.09502 0.86290 0.83913 0.78676 0.77374 1.20348 1.20951 1.19634 1.86526 1.33509 1.62378 1.44226 1.20903 0.81059 0.76799 0.87180 1.90710 1.54754 1.59175 1.35382 1.19367 0.95974 1.02642 0.93721 1.21588 0.99251 0.95390 0.91371 1.21064 0.96711 0.99338 0.98515 1.21147 0.94065 0.97951 0.97250 1.20139 0.98600 1.01609 0.93972 1.19664 0.93193 0.93299 0.95093 1.21583 0.93597 1.05841 0.94708 1.22808 0.96553 0.87379 0.95376 1.88050 1.84595 1.33078 1.23931 1.21357 0.90365 0.99992 0.85244 0.92743 0.94829 0.95010 0.87285 0.94000 0.92374 0.83977 0.85213 0.85597 0.86546 0.89016 0.92830 0.88194 0.87871 0.91905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 8.56 37.15 0.32 -2.77 16 2 C -0.14 -3.34 5.49 -26.73 -0.15 -3.49 16 3 C 0.22 5.85 2.25 -27.88 -0.06 5.79 16 4 H 0.05 1.39 7.16 -51.93 -0.37 1.02 16 5 C -0.52 -14.47 8.90 -34.44 -0.31 -14.77 16 6 H 0.07 1.87 7.81 -52.48 -0.41 1.46 16 7 C 0.06 1.73 5.29 -17.82 -0.09 1.64 16 8 N -0.89 -24.83 11.29 55.43 0.63 -24.20 16 9 Si 0.91 20.90 29.54 -169.99 -5.02 15.88 16 10 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 13 O -0.35 -8.27 9.05 -40.53 -0.37 -8.63 16 14 C 0.50 10.47 6.31 34.61 0.22 10.68 16 15 O -0.51 -11.29 10.35 -19.24 -0.20 -11.49 16 16 C -0.12 -2.01 5.88 -104.92 -0.62 -2.62 16 17 C -0.06 -0.86 9.61 -39.22 -0.38 -1.24 16 18 C -0.14 -1.62 10.03 -39.70 -0.40 -2.01 16 19 C -0.09 -0.93 9.66 -39.39 -0.38 -1.31 16 20 C -0.14 -1.80 5.80 -104.65 -0.61 -2.41 16 21 C -0.01 -0.19 5.82 -103.96 -0.61 -0.79 16 22 C -0.12 -1.80 4.57 -27.65 -0.13 -1.93 16 23 C 0.06 0.66 6.84 37.14 0.25 0.91 16 24 O -0.38 -4.80 10.80 -35.23 -0.38 -5.18 16 25 C 0.11 1.12 6.66 36.00 0.24 1.35 16 26 H 0.05 1.22 7.79 -51.93 -0.40 0.82 16 27 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.03 0.66 6.06 -51.93 -0.31 0.35 16 29 H 0.11 2.91 5.95 -51.93 -0.31 2.60 16 30 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.27 7.03 8.31 -40.82 -0.34 6.70 16 32 H 0.14 2.12 7.60 -52.49 -0.40 1.72 16 33 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 34 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 35 H 0.12 1.92 6.02 -51.92 -0.31 1.60 16 36 H 0.09 1.47 8.10 -51.93 -0.42 1.05 16 37 H 0.05 0.57 8.07 -51.93 -0.42 0.16 16 38 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 39 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 323.72 15.07 4.88 4.88 Total: -1.00 -30.11 323.72 -8.61 -38.72 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -5.46 Total: 2.99 kcal Atomic # 6 Polarization: -10.28 SS G_CDS: -2.69 Total: -12.97 kcal Atomic # 7 Polarization: -24.83 SS G_CDS: 0.63 Total: -24.20 kcal Atomic # 8 Polarization: -24.35 SS G_CDS: -0.95 Total: -25.30 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.11 -8.61 -38.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344869140.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.667 kcal (2) G-P(sol) polarization free energy of solvation -30.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds