Wall clock time and date at job start Tue Mar 31 2020 06:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47026 * 2 1 4 4 H 1.09000 * 109.47244 * 304.99931 * 3 2 1 5 5 C 1.50699 * 109.47154 * 184.99977 * 3 2 1 6 6 H 1.08005 * 119.99928 * 239.99739 * 5 3 2 7 7 C 1.37873 * 120.00257 * 60.00042 * 5 3 2 8 8 N 1.31515 * 119.99804 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 120.00369 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47007 * 89.99642 * 9 7 5 11 11 H 1.48497 * 109.46765 * 209.99861 * 9 7 5 12 12 H 1.48502 * 109.46843 * 329.99959 * 9 7 5 13 13 O 1.45202 * 109.47384 * 64.99913 * 3 2 1 14 14 C 1.34715 * 117.00093 * 270.00326 * 13 3 2 15 15 O 1.21464 * 119.99889 * 359.97438 * 14 13 3 16 16 C 1.47724 * 119.99971 * 179.97438 * 14 13 3 17 17 C 1.39510 * 120.01789 * 359.97438 * 16 14 13 18 18 C 1.37931 * 119.69049 * 180.02562 * 17 16 14 19 19 C 1.38213 * 120.06184 * 0.06924 * 18 17 16 20 20 C 1.38769 * 120.62589 * 0.02562 * 19 18 17 21 21 C 1.37650 * 119.86179 * 359.83508 * 20 19 18 22 22 C 1.51198 * 121.50381 * 180.48198 * 21 20 19 23 23 C 1.52971 * 109.52158 * 343.07969 * 22 21 20 24 24 O 1.43215 * 108.62297 * 49.09435 * 23 22 21 25 25 C 1.42718 * 113.13420 * 289.29682 * 24 23 22 26 26 H 1.08998 * 109.47627 * 60.00122 * 1 2 3 27 27 H 1.09003 * 109.47325 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47380 * 299.99800 * 1 2 3 29 29 H 1.09001 * 109.47182 * 239.99697 * 2 1 3 30 30 H 1.09003 * 109.46972 * 119.99640 * 2 1 3 31 31 H 0.96998 * 120.00170 * 180.02562 * 8 7 5 32 32 H 1.07997 * 120.15655 * 0.05990 * 17 16 14 33 33 H 1.08000 * 119.96697 * 180.09088 * 18 17 16 34 34 H 1.08002 * 119.68861 * 179.97438 * 19 18 17 35 35 H 1.09007 * 109.68330 * 222.97825 * 22 21 20 36 36 H 1.09004 * 109.40916 * 103.01559 * 22 21 20 37 37 H 1.09002 * 109.64098 * 289.29956 * 23 22 21 38 38 H 1.09002 * 109.63932 * 168.88490 * 23 22 21 39 39 H 1.09002 * 109.33633 * 172.02227 * 25 24 23 40 40 H 1.08997 * 109.33386 * 291.69275 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5418 1.4443 -0.1238 6 1 4.1471 1.8890 0.6523 7 6 4.1432 0.8785 -1.2279 8 7 3.4062 0.3367 -2.1728 9 14 6.0050 0.8801 -1.3811 10 1 6.5538 -0.3519 -0.7597 11 1 6.3834 0.9215 -2.8164 12 1 6.5575 2.0721 -0.6888 13 8 1.6558 2.0917 1.2407 14 6 0.4683 2.7277 1.2560 15 8 -0.2269 2.7400 0.2601 16 6 0.0118 3.4102 2.4840 17 6 0.8098 3.3959 3.6283 18 6 0.3766 4.0348 4.7713 19 6 -0.8433 4.6845 4.7814 20 6 -1.6442 4.7020 3.6483 21 6 -1.2218 4.0704 2.5005 22 6 -2.0595 4.0754 1.2419 23 6 -3.4971 4.4690 1.5863 24 8 -3.4666 5.6518 2.3933 25 6 -2.9679 5.4193 3.7101 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8932 -0.5138 0.8900 31 1 3.8293 -0.0618 -2.9494 32 1 1.7625 2.8873 3.6189 33 1 0.9915 4.0278 5.6592 34 1 -1.1767 5.1825 5.6799 35 1 -2.0534 3.0822 0.7928 36 1 -1.6463 4.7945 0.5346 37 1 -3.9759 3.6607 2.1389 38 1 -4.0528 4.6654 0.6693 39 1 -2.8378 6.3737 4.2204 40 1 -3.6812 4.8085 4.2635 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344869140.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:55 Heat of formation + Delta-G solvation = -131.136739 kcal Electronic energy + Delta-G solvation = -23477.822286 eV Core-core repulsion = 20028.572627 eV Total energy + Delta-G solvation = -3449.249660 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.89279 -40.65380 -38.50266 -37.65305 -35.54694 -33.88606 -33.45268 -32.82532 -30.79397 -29.31162 -26.56385 -25.90848 -24.87587 -24.53869 -22.37260 -21.48257 -21.01275 -19.06837 -18.52491 -17.79114 -17.40341 -17.05810 -17.02132 -16.73808 -16.37304 -16.17562 -15.21824 -15.04681 -14.83273 -14.77688 -14.37373 -13.88107 -13.79245 -13.45076 -13.36950 -13.23151 -13.12420 -12.96856 -12.78382 -12.73063 -12.56838 -12.44889 -12.15610 -11.78990 -11.64282 -11.43433 -11.18173 -10.86042 -10.57643 -10.50071 -9.92535 -9.67564 -8.29650 -6.46685 -0.30351 0.25556 1.39787 1.41867 1.52788 1.62048 1.97421 2.39914 2.68422 2.91646 3.00019 3.60067 3.61702 3.78595 3.93097 4.02959 4.19007 4.31888 4.34514 4.35824 4.38614 4.47969 4.52200 4.59562 4.73921 4.78211 4.80353 4.83540 4.92518 5.03798 5.08285 5.18117 5.30078 5.31596 5.36772 5.46276 5.53277 5.64106 5.85120 5.94897 6.09646 6.11367 6.57693 6.95981 7.24921 8.77238 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.024574 B = 0.004244 C = 0.003894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.131986 B = 6595.729949 C = 7189.094758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.129 4.129 3 C 0.227 3.773 4 H 0.007 0.993 5 C -0.552 4.552 6 H 0.064 0.936 7 C 0.019 3.981 8 N -0.913 5.913 9 Si 0.981 3.019 10 H -0.266 1.266 11 H -0.277 1.277 12 H -0.267 1.267 13 O -0.360 6.360 14 C 0.487 3.513 15 O -0.530 6.530 16 C -0.149 4.149 17 C -0.072 4.072 18 C -0.128 4.128 19 C -0.065 4.065 20 C -0.143 4.143 21 C -0.031 4.031 22 C -0.119 4.119 23 C 0.063 3.937 24 O -0.392 6.392 25 C 0.102 3.898 26 H 0.038 0.962 27 H 0.061 0.939 28 H 0.033 0.967 29 H 0.088 0.912 30 H 0.044 0.956 31 H 0.271 0.729 32 H 0.132 0.868 33 H 0.167 0.833 34 H 0.176 0.824 35 H 0.091 0.909 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.112 0.888 39 H 0.133 0.867 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.299 7.692 15.438 20.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.167 4.167 3 C 0.174 3.826 4 H 0.024 0.976 5 C -0.589 4.589 6 H 0.082 0.918 7 C -0.181 4.181 8 N -0.551 5.551 9 Si 0.804 3.196 10 H -0.191 1.191 11 H -0.202 1.202 12 H -0.192 1.192 13 O -0.276 6.276 14 C 0.334 3.666 15 O -0.423 6.423 16 C -0.150 4.150 17 C -0.090 4.090 18 C -0.145 4.145 19 C -0.083 4.083 20 C -0.143 4.143 21 C -0.031 4.031 22 C -0.156 4.156 23 C -0.013 4.013 24 O -0.311 6.311 25 C 0.026 3.974 26 H 0.057 0.943 27 H 0.080 0.920 28 H 0.052 0.948 29 H 0.106 0.894 30 H 0.063 0.937 31 H 0.080 0.920 32 H 0.150 0.850 33 H 0.185 0.815 34 H 0.194 0.806 35 H 0.110 0.890 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.130 0.870 39 H 0.150 0.850 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -11.518 7.753 14.872 20.346 hybrid contribution 1.277 -0.663 -0.962 1.731 sum -10.241 7.090 13.910 18.672 Atomic orbital electron populations 1.21696 0.96277 1.00568 0.99985 1.21864 0.94492 0.98024 1.02312 1.20382 0.94555 0.89240 0.78419 0.97565 1.21316 0.90458 1.40137 1.06997 0.91777 1.25786 1.04243 0.93793 0.94251 1.70007 1.37445 1.37802 1.09869 0.85216 0.77666 0.79106 0.77634 1.19079 1.20204 1.19162 1.86506 1.35301 1.63131 1.42699 1.21751 0.79900 0.76292 0.88662 1.90694 1.54979 1.59947 1.36671 1.19289 0.97903 1.05040 0.92751 1.21662 0.98853 0.96442 0.92046 1.21475 0.97406 0.97530 0.98136 1.21705 0.92658 0.95888 0.98023 1.20551 0.99912 1.00588 0.93273 1.19820 0.92647 0.94265 0.96415 1.21450 0.95940 1.03775 0.94473 1.22764 0.94299 0.87882 0.96362 1.88034 1.84614 1.33291 1.25139 1.21718 0.89379 1.01712 0.84605 0.94331 0.91959 0.94837 0.89388 0.93716 0.91983 0.85021 0.81545 0.80639 0.89048 0.91484 0.91227 0.86999 0.84952 0.89296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.75 8.56 71.98 0.62 -5.14 16 2 C -0.13 -6.64 5.49 30.59 0.17 -6.47 16 3 C 0.23 12.70 2.25 29.85 0.07 12.77 16 4 H 0.01 0.41 7.16 -2.39 -0.02 0.39 16 5 C -0.55 -31.92 8.90 25.60 0.23 -31.69 16 6 H 0.06 3.65 7.81 -2.91 -0.02 3.63 16 7 C 0.02 1.07 5.29 84.65 0.45 1.52 16 8 N -0.91 -52.74 11.29 21.45 0.24 -52.50 16 9 Si 0.98 43.32 29.54 68.60 2.03 45.35 16 10 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 11 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 12 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 13 O -0.36 -18.11 9.05 -56.25 -0.51 -18.62 16 14 C 0.49 22.05 6.31 70.33 0.44 22.49 16 15 O -0.53 -25.60 10.35 19.95 0.21 -25.40 16 16 C -0.15 -5.33 5.88 -20.06 -0.12 -5.45 16 17 C -0.07 -2.12 9.61 22.50 0.22 -1.90 16 18 C -0.13 -2.54 10.03 22.19 0.22 -2.32 16 19 C -0.07 -1.09 9.66 22.39 0.22 -0.88 16 20 C -0.14 -3.17 5.80 -19.88 -0.12 -3.29 16 21 C -0.03 -0.96 5.82 -19.44 -0.11 -1.07 16 22 C -0.12 -3.74 4.57 30.00 0.14 -3.60 16 23 C 0.06 1.46 6.84 71.97 0.49 1.95 16 24 O -0.39 -9.01 10.80 -148.98 -1.61 -10.62 16 25 C 0.10 1.69 6.66 71.23 0.47 2.17 16 26 H 0.04 1.82 7.79 -2.39 -0.02 1.80 16 27 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 28 H 0.03 1.46 6.06 -2.39 -0.01 1.45 16 29 H 0.09 4.91 5.95 -2.39 -0.01 4.90 16 30 H 0.04 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 32 H 0.13 4.05 7.60 -2.91 -0.02 4.02 16 33 H 0.17 2.10 8.06 -2.91 -0.02 2.08 16 34 H 0.18 1.30 8.06 -2.91 -0.02 1.28 16 35 H 0.09 3.27 6.02 -2.38 -0.01 3.26 16 36 H 0.07 2.35 8.10 -2.39 -0.02 2.33 16 37 H 0.07 1.37 8.07 -2.39 -0.02 1.36 16 38 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 39 H 0.13 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -70.32 323.72 4.78 -65.53 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: 1.04 Total: 17.17 kcal Atomic # 6 Polarization: -24.30 SS G_CDS: 3.38 Total: -20.91 kcal Atomic # 7 Polarization: -52.74 SS G_CDS: 0.24 Total: -52.50 kcal Atomic # 8 Polarization: -52.73 SS G_CDS: -1.91 Total: -54.64 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -70.32 4.78 -65.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344869140.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.604 kcal (2) G-P(sol) polarization free energy of solvation -70.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds