Wall clock time and date at job start Tue Mar 31 2020 06:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47148 * 2 1 4 4 H 1.08995 * 109.47327 * 54.99680 * 3 2 1 5 5 C 1.50701 * 109.46995 * 175.00000 * 3 2 1 6 6 H 1.08002 * 119.99872 * 120.00163 * 5 3 2 7 7 C 1.37872 * 120.00117 * 299.99345 * 5 3 2 8 8 N 1.31516 * 120.00191 * 180.02562 * 7 5 3 9 9 Si 1.86800 * 119.99754 * 0.02562 * 7 5 3 10 10 H 1.48490 * 109.47616 * 89.99874 * 9 7 5 11 11 H 1.48507 * 109.46829 * 210.00030 * 9 7 5 12 12 H 1.48499 * 109.47468 * 329.99196 * 9 7 5 13 13 O 1.45202 * 109.46633 * 294.99815 * 3 2 1 14 14 C 1.34715 * 117.00093 * 90.00377 * 13 3 2 15 15 O 1.21464 * 119.99889 * 359.97438 * 14 13 3 16 16 C 1.47724 * 119.99971 * 179.97438 * 14 13 3 17 17 C 1.39510 * 120.01789 * 359.97438 * 16 14 13 18 18 C 1.37931 * 119.69049 * 180.02562 * 17 16 14 19 19 C 1.38213 * 120.06184 * 0.06924 * 18 17 16 20 20 C 1.38769 * 120.62589 * 0.02562 * 19 18 17 21 21 C 1.37650 * 119.86179 * 359.83508 * 20 19 18 22 22 C 1.51198 * 121.50381 * 180.48198 * 21 20 19 23 23 C 1.52971 * 109.52158 * 343.07969 * 22 21 20 24 24 O 1.43215 * 108.62297 * 49.09435 * 23 22 21 25 25 C 1.42718 * 113.13420 * 289.29682 * 24 23 22 26 26 H 1.08996 * 109.47227 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46861 * 300.00353 * 1 2 3 28 28 H 1.09001 * 109.47254 * 60.00058 * 1 2 3 29 29 H 1.08992 * 109.47448 * 239.99574 * 2 1 3 30 30 H 1.09003 * 109.47166 * 119.99165 * 2 1 3 31 31 H 0.96993 * 119.99832 * 180.02562 * 8 7 5 32 32 H 1.07997 * 120.15655 * 0.05990 * 17 16 14 33 33 H 1.08000 * 119.96697 * 180.09088 * 18 17 16 34 34 H 1.08002 * 119.68861 * 179.97438 * 19 18 17 35 35 H 1.09007 * 109.68330 * 222.97825 * 22 21 20 36 36 H 1.09004 * 109.40916 * 103.01559 * 22 21 20 37 37 H 1.09002 * 109.64098 * 289.29956 * 23 22 21 38 38 H 1.09002 * 109.63932 * 168.88490 * 23 22 21 39 39 H 1.09002 * 109.33633 * 172.02227 * 25 24 23 40 40 H 1.08997 * 109.33386 * 291.69275 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8785 1.2280 8 7 5.4540 0.8805 1.3363 9 14 3.0963 0.1091 2.5701 10 1 2.8754 -1.3269 2.2637 11 1 3.7936 0.2352 3.8752 12 1 1.7877 0.8077 2.6388 13 8 1.6559 2.0916 -1.2408 14 6 0.4684 2.7277 -1.2561 15 8 -0.2272 2.7394 -0.2605 16 6 0.0124 3.4110 -2.4839 17 6 0.8113 3.3982 -3.6275 18 6 0.3791 4.0388 -4.7700 19 6 -0.8395 4.6909 -4.7793 20 6 -1.6395 4.7102 -3.6456 21 6 -1.2206 4.0722 -2.5001 22 6 -2.0672 4.0606 -1.2475 23 6 -3.1334 5.1536 -1.3410 24 8 -3.7875 5.0470 -2.6106 25 6 -2.9574 5.4386 -3.7036 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 5.8770 0.4821 2.1129 32 1 1.7635 2.8886 -3.6185 33 1 0.9933 4.0305 -5.6583 34 1 -1.1718 5.1909 -5.6770 35 1 -1.4372 4.2424 -0.3767 36 1 -2.5517 3.0893 -1.1466 37 1 -2.6630 6.1328 -1.2522 38 1 -3.8625 5.0235 -0.5412 39 1 -3.4599 5.2015 -4.6414 40 1 -2.7763 6.5122 -3.6526 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344869141.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:58 Heat of formation + Delta-G solvation = -104.748155 kcal Electronic energy + Delta-G solvation = -23569.398326 eV Core-core repulsion = 20121.292961 eV Total energy + Delta-G solvation = -3448.105365 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.72017 -39.40266 -37.55279 -36.13249 -33.67294 -32.86000 -32.06878 -31.77811 -29.80640 -27.83710 -25.69509 -24.50685 -23.64359 -22.74225 -21.12398 -20.33149 -19.70284 -17.73080 -16.81306 -16.64468 -16.21533 -15.95340 -15.91787 -15.43365 -15.32487 -14.73617 -14.21046 -13.71161 -13.57274 -13.37023 -13.06741 -12.76636 -12.51477 -12.36089 -12.01884 -11.94709 -11.83738 -11.68857 -11.57717 -11.41605 -11.20563 -10.78054 -10.71996 -10.12959 -10.03638 -9.70232 -9.63164 -9.32765 -9.10520 -8.92395 -8.71486 -8.67019 -6.25946 -4.28530 0.78209 1.23071 2.88928 3.16167 3.28584 3.30522 3.39038 3.71367 3.79918 4.23485 4.47658 4.57511 4.78519 4.88282 5.03475 5.05237 5.10294 5.15425 5.19941 5.37456 5.50848 5.64005 5.72455 5.79678 5.81931 5.84395 5.90141 5.97536 6.13410 6.25641 6.32005 6.39328 6.50620 6.54570 6.66189 6.70830 6.78583 6.93291 7.03967 7.32425 7.48790 8.18910 8.54741 8.80990 9.30963 10.86053 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.024957 B = 0.004547 C = 0.004122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.668101 B = 6156.035649 C = 6791.270328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.148 4.148 3 C 0.198 3.802 4 H 0.047 0.953 5 C -0.526 4.526 6 H 0.087 0.913 7 C 0.081 3.919 8 N -0.888 5.888 9 Si 0.877 3.123 10 H -0.272 1.272 11 H -0.290 1.290 12 H -0.260 1.260 13 O -0.335 6.335 14 C 0.497 3.503 15 O -0.510 6.510 16 C -0.118 4.118 17 C -0.056 4.056 18 C -0.137 4.137 19 C -0.084 4.084 20 C -0.143 4.143 21 C -0.011 4.011 22 C -0.121 4.121 23 C 0.055 3.945 24 O -0.378 6.378 25 C 0.107 3.893 26 H 0.041 0.959 27 H 0.056 0.944 28 H 0.045 0.955 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.270 0.730 32 H 0.144 0.856 33 H 0.131 0.869 34 H 0.127 0.873 35 H 0.116 0.884 36 H 0.091 0.909 37 H 0.054 0.946 38 H 0.100 0.900 39 H 0.104 0.896 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.006 7.668 -10.436 19.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.186 4.186 3 C 0.145 3.855 4 H 0.065 0.935 5 C -0.564 4.564 6 H 0.105 0.895 7 C -0.123 4.123 8 N -0.524 5.524 9 Si 0.706 3.294 10 H -0.199 1.199 11 H -0.217 1.217 12 H -0.185 1.185 13 O -0.251 6.251 14 C 0.342 3.658 15 O -0.402 6.402 16 C -0.119 4.119 17 C -0.074 4.074 18 C -0.155 4.155 19 C -0.102 4.102 20 C -0.143 4.143 21 C -0.012 4.012 22 C -0.158 4.158 23 C -0.021 4.021 24 O -0.296 6.296 25 C 0.030 3.970 26 H 0.060 0.940 27 H 0.075 0.925 28 H 0.064 0.936 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.162 0.838 33 H 0.149 0.851 34 H 0.145 0.855 35 H 0.134 0.866 36 H 0.109 0.891 37 H 0.073 0.927 38 H 0.118 0.882 39 H 0.122 0.878 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -15.183 7.523 -10.019 19.685 hybrid contribution 0.046 -0.568 0.804 0.985 sum -15.137 6.955 -9.215 19.037 Atomic orbital electron populations 1.21896 0.96940 1.00039 1.01788 1.22364 0.94403 0.99567 1.02224 1.20994 0.96327 0.88066 0.80140 0.93485 1.20785 0.87681 1.39984 1.07907 0.89505 1.24723 0.94940 0.95237 0.97352 1.69834 1.08499 1.44265 1.29831 0.86999 0.81006 0.80155 0.81280 1.19913 1.21669 1.18491 1.86552 1.33783 1.62253 1.42481 1.20996 0.80702 0.76732 0.87330 1.90709 1.55361 1.58421 1.35697 1.19273 0.96026 1.03130 0.93491 1.21615 0.99236 0.95251 0.91296 1.21084 0.96690 0.99195 0.98562 1.21173 0.94090 0.97640 0.97266 1.20139 0.98373 1.01997 0.93793 1.19648 0.92691 0.93684 0.95136 1.21585 0.96982 1.00727 0.96465 1.22803 0.95738 0.97906 0.85692 1.88051 1.38523 1.88132 1.14940 1.21367 0.87641 0.96954 0.91031 0.93952 0.92495 0.93572 0.91239 0.91771 0.92033 0.83816 0.85071 0.85499 0.86577 0.89084 0.92735 0.88202 0.87820 0.91817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 8.56 37.16 0.32 -2.62 16 2 C -0.15 -3.33 5.15 -26.73 -0.14 -3.47 16 3 C 0.20 4.91 1.84 -27.88 -0.05 4.86 16 4 H 0.05 1.23 6.22 -51.93 -0.32 0.90 16 5 C -0.53 -14.88 9.48 -34.44 -0.33 -15.20 16 6 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 7 C 0.08 2.30 5.45 -17.82 -0.10 2.20 16 8 N -0.89 -26.47 13.96 55.43 0.77 -25.70 16 9 Si 0.88 21.42 24.41 -169.99 -4.15 17.27 16 10 H -0.27 -6.40 6.83 56.52 0.39 -6.02 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.26 -6.23 6.53 56.52 0.37 -5.86 16 13 O -0.34 -7.55 9.05 -40.53 -0.37 -7.92 16 14 C 0.50 9.90 6.31 34.61 0.22 10.12 16 15 O -0.51 -10.56 10.35 -19.24 -0.20 -10.76 16 16 C -0.12 -1.94 5.88 -104.92 -0.62 -2.56 16 17 C -0.06 -0.80 9.61 -39.22 -0.38 -1.18 16 18 C -0.14 -1.54 10.03 -39.70 -0.40 -1.94 16 19 C -0.08 -0.86 9.66 -39.39 -0.38 -1.24 16 20 C -0.14 -1.71 5.80 -104.65 -0.61 -2.32 16 21 C -0.01 -0.16 5.82 -103.96 -0.61 -0.77 16 22 C -0.12 -1.70 4.57 -27.65 -0.13 -1.82 16 23 C 0.06 0.62 6.84 37.14 0.25 0.87 16 24 O -0.38 -4.55 10.80 -35.23 -0.38 -4.93 16 25 C 0.11 1.05 6.66 36.00 0.24 1.29 16 26 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.06 1.14 7.79 -51.93 -0.40 0.74 16 28 H 0.05 0.89 6.06 -51.93 -0.31 0.58 16 29 H 0.07 1.52 8.14 -51.93 -0.42 1.09 16 30 H 0.06 1.49 3.21 -51.93 -0.17 1.32 16 31 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 32 H 0.14 2.08 7.60 -52.49 -0.40 1.68 16 33 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 34 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 35 H 0.12 1.80 6.02 -51.92 -0.31 1.49 16 36 H 0.09 1.35 8.10 -51.93 -0.42 0.93 16 37 H 0.05 0.56 8.07 -51.93 -0.42 0.14 16 38 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 316.95 15.07 4.78 4.78 Total: -1.00 -31.24 316.95 -7.56 -38.80 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -5.33 Total: 2.22 kcal Atomic # 6 Polarization: -11.07 SS G_CDS: -2.69 Total: -13.77 kcal Atomic # 7 Polarization: -26.47 SS G_CDS: 0.77 Total: -25.70 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: -0.95 Total: -23.61 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.15 Total: 17.27 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -31.24 -7.56 -38.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344869141.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.945 kcal (2) G-P(sol) polarization free energy of solvation -31.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds