Wall clock time and date at job start Tue Mar 31 2020 06:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47148 * 2 1 4 4 H 1.08995 * 109.47327 * 54.99680 * 3 2 1 5 5 C 1.50701 * 109.46995 * 175.00000 * 3 2 1 6 6 H 1.08002 * 119.99872 * 120.00163 * 5 3 2 7 7 C 1.37872 * 120.00117 * 299.99345 * 5 3 2 8 8 N 1.31516 * 120.00191 * 180.02562 * 7 5 3 9 9 Si 1.86800 * 119.99754 * 0.02562 * 7 5 3 10 10 H 1.48490 * 109.47616 * 89.99874 * 9 7 5 11 11 H 1.48507 * 109.46829 * 210.00030 * 9 7 5 12 12 H 1.48499 * 109.47468 * 329.99196 * 9 7 5 13 13 O 1.45202 * 109.46633 * 294.99815 * 3 2 1 14 14 C 1.34715 * 117.00093 * 90.00377 * 13 3 2 15 15 O 1.21464 * 119.99889 * 359.97438 * 14 13 3 16 16 C 1.47724 * 119.99971 * 179.97438 * 14 13 3 17 17 C 1.39510 * 120.01789 * 359.97438 * 16 14 13 18 18 C 1.37931 * 119.69049 * 180.02562 * 17 16 14 19 19 C 1.38213 * 120.06184 * 0.06924 * 18 17 16 20 20 C 1.38769 * 120.62589 * 0.02562 * 19 18 17 21 21 C 1.37650 * 119.86179 * 359.83508 * 20 19 18 22 22 C 1.51198 * 121.50381 * 180.48198 * 21 20 19 23 23 C 1.52971 * 109.52158 * 343.07969 * 22 21 20 24 24 O 1.43215 * 108.62297 * 49.09435 * 23 22 21 25 25 C 1.42718 * 113.13420 * 289.29682 * 24 23 22 26 26 H 1.08996 * 109.47227 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46861 * 300.00353 * 1 2 3 28 28 H 1.09001 * 109.47254 * 60.00058 * 1 2 3 29 29 H 1.08992 * 109.47448 * 239.99574 * 2 1 3 30 30 H 1.09003 * 109.47166 * 119.99165 * 2 1 3 31 31 H 0.96993 * 119.99832 * 180.02562 * 8 7 5 32 32 H 1.07997 * 120.15655 * 0.05990 * 17 16 14 33 33 H 1.08000 * 119.96697 * 180.09088 * 18 17 16 34 34 H 1.08002 * 119.68861 * 179.97438 * 19 18 17 35 35 H 1.09007 * 109.68330 * 222.97825 * 22 21 20 36 36 H 1.09004 * 109.40916 * 103.01559 * 22 21 20 37 37 H 1.09002 * 109.64098 * 289.29956 * 23 22 21 38 38 H 1.09002 * 109.63932 * 168.88490 * 23 22 21 39 39 H 1.09002 * 109.33633 * 172.02227 * 25 24 23 40 40 H 1.08997 * 109.33386 * 291.69275 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8785 1.2280 8 7 5.4540 0.8805 1.3363 9 14 3.0963 0.1091 2.5701 10 1 2.8754 -1.3269 2.2637 11 1 3.7936 0.2352 3.8752 12 1 1.7877 0.8077 2.6388 13 8 1.6559 2.0916 -1.2408 14 6 0.4684 2.7277 -1.2561 15 8 -0.2272 2.7394 -0.2605 16 6 0.0124 3.4110 -2.4839 17 6 0.8113 3.3982 -3.6275 18 6 0.3791 4.0388 -4.7700 19 6 -0.8395 4.6909 -4.7793 20 6 -1.6395 4.7102 -3.6456 21 6 -1.2206 4.0722 -2.5001 22 6 -2.0672 4.0606 -1.2475 23 6 -3.1334 5.1536 -1.3410 24 8 -3.7875 5.0470 -2.6106 25 6 -2.9574 5.4386 -3.7036 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 5.8770 0.4821 2.1129 32 1 1.7635 2.8886 -3.6185 33 1 0.9933 4.0305 -5.6583 34 1 -1.1718 5.1909 -5.6770 35 1 -1.4372 4.2424 -0.3767 36 1 -2.5517 3.0893 -1.1466 37 1 -2.6630 6.1328 -1.2522 38 1 -3.8625 5.0235 -0.5412 39 1 -3.4599 5.2015 -4.6414 40 1 -2.7763 6.5122 -3.6526 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344869141.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:57 Heat of formation + Delta-G solvation = -123.898272 kcal Electronic energy + Delta-G solvation = -23570.228737 eV Core-core repulsion = 20121.292961 eV Total energy + Delta-G solvation = -3448.935776 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.96725 -40.74117 -38.52838 -37.78672 -35.58173 -34.03234 -33.84559 -32.88287 -30.82121 -29.76332 -26.56952 -25.86210 -24.72930 -24.49586 -22.69952 -21.58022 -21.05826 -19.36968 -18.54957 -18.03360 -17.47739 -17.28074 -17.06871 -16.65467 -16.48650 -16.19804 -15.41116 -15.15337 -14.99971 -14.68345 -14.46567 -14.14833 -13.95921 -13.75804 -13.52382 -13.29299 -13.24880 -13.16413 -12.89020 -12.76246 -12.58327 -12.47335 -12.06602 -11.63412 -11.59264 -11.51990 -11.24604 -11.13722 -10.77678 -10.52788 -9.94576 -9.68552 -8.47610 -6.56413 -0.33732 0.24431 1.20758 1.28324 1.38125 1.55157 1.85516 2.16838 2.66019 2.84605 2.91695 3.57714 3.59602 3.69322 3.88952 4.01542 4.05176 4.13415 4.19268 4.21073 4.32820 4.38013 4.49885 4.52393 4.58413 4.75101 4.78067 4.80309 4.88359 4.91009 4.92360 4.99050 5.06172 5.26374 5.28882 5.32841 5.35672 5.43631 5.65321 5.84388 6.10865 6.12323 6.47098 6.85143 7.08697 8.68385 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.024957 B = 0.004547 C = 0.004122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.668101 B = 6156.035649 C = 6791.270328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.146 4.146 3 C 0.203 3.797 4 H 0.031 0.969 5 C -0.541 4.541 6 H 0.045 0.955 7 C 0.033 3.967 8 N -0.929 5.929 9 Si 0.937 3.063 10 H -0.250 1.250 11 H -0.282 1.282 12 H -0.255 1.255 13 O -0.350 6.350 14 C 0.491 3.509 15 O -0.525 6.525 16 C -0.149 4.149 17 C -0.072 4.072 18 C -0.129 4.129 19 C -0.064 4.064 20 C -0.143 4.143 21 C -0.028 4.028 22 C -0.119 4.119 23 C 0.062 3.938 24 O -0.391 6.391 25 C 0.102 3.898 26 H 0.074 0.926 27 H 0.049 0.951 28 H 0.042 0.958 29 H 0.071 0.929 30 H 0.061 0.939 31 H 0.276 0.724 32 H 0.130 0.870 33 H 0.165 0.835 34 H 0.175 0.825 35 H 0.092 0.908 36 H 0.075 0.925 37 H 0.066 0.934 38 H 0.114 0.886 39 H 0.133 0.867 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.716 8.312 -12.156 23.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.183 4.183 3 C 0.149 3.851 4 H 0.049 0.951 5 C -0.579 4.579 6 H 0.064 0.936 7 C -0.167 4.167 8 N -0.567 5.567 9 Si 0.762 3.238 10 H -0.176 1.176 11 H -0.209 1.209 12 H -0.180 1.180 13 O -0.266 6.266 14 C 0.338 3.662 15 O -0.417 6.417 16 C -0.150 4.150 17 C -0.091 4.091 18 C -0.147 4.147 19 C -0.082 4.082 20 C -0.143 4.143 21 C -0.029 4.029 22 C -0.156 4.156 23 C -0.015 4.015 24 O -0.310 6.310 25 C 0.026 3.974 26 H 0.093 0.907 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.090 0.910 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.148 0.852 33 H 0.182 0.818 34 H 0.193 0.807 35 H 0.110 0.890 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.132 0.868 39 H 0.151 0.849 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -17.908 8.172 -11.758 22.929 hybrid contribution 0.916 -0.636 1.170 1.617 sum -16.991 7.537 -10.588 21.392 Atomic orbital electron populations 1.21793 0.94561 1.01950 1.01318 1.22266 0.96462 0.97466 1.02124 1.20665 0.93968 0.89712 0.80757 0.95109 1.20964 0.89632 1.40001 1.07275 0.93621 1.25535 0.96077 0.95491 0.99586 1.69953 1.10352 1.45399 1.31028 0.86021 0.79332 0.80308 0.78149 1.17551 1.20889 1.17964 1.86535 1.35766 1.63085 1.41252 1.21721 0.79530 0.76248 0.88713 1.90690 1.55392 1.58985 1.36628 1.19225 0.97876 1.05287 0.92619 1.21663 0.98812 0.96418 0.92162 1.21463 0.97426 0.97638 0.98162 1.21704 0.92695 0.95673 0.98087 1.20546 0.99621 1.01013 0.93131 1.19823 0.92121 0.94444 0.96476 1.21473 0.97398 1.01068 0.95692 1.22779 0.95232 0.97199 0.86266 1.88037 1.39135 1.88365 1.15432 1.21705 0.86357 0.97875 0.91465 0.90732 0.93169 0.93888 0.91020 0.92092 0.91489 0.85227 0.81778 0.80737 0.88982 0.90716 0.91524 0.86833 0.84934 0.89491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.36 8.56 71.98 0.62 -4.74 16 2 C -0.15 -6.57 5.15 30.60 0.16 -6.41 16 3 C 0.20 10.45 1.84 29.85 0.06 10.51 16 4 H 0.03 1.68 6.22 -2.39 -0.01 1.66 16 5 C -0.54 -32.22 9.48 25.60 0.24 -31.98 16 6 H 0.05 3.00 8.06 -2.91 -0.02 2.98 16 7 C 0.03 1.93 5.45 84.65 0.46 2.39 16 8 N -0.93 -57.23 13.96 21.45 0.30 -56.93 16 9 Si 0.94 44.51 24.41 68.60 1.67 46.18 16 10 H -0.25 -10.98 6.83 99.48 0.68 -10.30 16 11 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 12 H -0.26 -11.86 6.53 99.48 0.65 -11.21 16 13 O -0.35 -16.70 9.05 -56.25 -0.51 -17.21 16 14 C 0.49 20.56 6.31 70.33 0.44 21.00 16 15 O -0.52 -22.77 10.35 19.95 0.21 -22.57 16 16 C -0.15 -5.03 5.88 -20.06 -0.12 -5.15 16 17 C -0.07 -2.07 9.61 22.50 0.22 -1.86 16 18 C -0.13 -2.52 10.03 22.19 0.22 -2.30 16 19 C -0.06 -1.03 9.66 22.39 0.22 -0.81 16 20 C -0.14 -2.98 5.80 -19.88 -0.12 -3.09 16 21 C -0.03 -0.81 5.82 -19.44 -0.11 -0.92 16 22 C -0.12 -3.39 4.57 30.00 0.14 -3.25 16 23 C 0.06 1.30 6.84 71.97 0.49 1.79 16 24 O -0.39 -8.31 10.80 -148.98 -1.61 -9.92 16 25 C 0.10 1.58 6.66 71.23 0.47 2.05 16 26 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 27 H 0.05 1.99 7.79 -2.38 -0.02 1.97 16 28 H 0.04 1.66 6.06 -2.39 -0.01 1.65 16 29 H 0.07 3.15 8.14 -2.39 -0.02 3.13 16 30 H 0.06 2.77 3.21 -2.39 -0.01 2.76 16 31 H 0.28 15.65 8.31 -92.71 -0.77 14.88 16 32 H 0.13 3.97 7.60 -2.91 -0.02 3.94 16 33 H 0.16 2.10 8.06 -2.91 -0.02 2.07 16 34 H 0.18 1.21 8.06 -2.91 -0.02 1.19 16 35 H 0.09 3.02 6.02 -2.38 -0.01 3.01 16 36 H 0.07 2.29 8.10 -2.39 -0.02 2.27 16 37 H 0.07 1.23 8.07 -2.39 -0.02 1.22 16 38 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.13 1.31 8.14 -2.39 -0.02 1.30 16 40 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -72.05 316.95 4.42 -67.63 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: 0.97 Total: 15.57 kcal Atomic # 6 Polarization: -26.16 SS G_CDS: 3.39 Total: -22.77 kcal Atomic # 7 Polarization: -57.23 SS G_CDS: 0.30 Total: -56.93 kcal Atomic # 8 Polarization: -47.78 SS G_CDS: -1.91 Total: -49.70 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 1.67 Total: 46.18 kcal Total: -72.05 4.42 -67.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344869141.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.265 kcal (2) G-P(sol) polarization free energy of solvation -72.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds