Wall clock time and date at job start Tue Mar 31 2020 06:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47329 * 2 1 4 4 C 1.50699 * 109.46652 * 239.99874 * 2 1 3 5 5 H 1.07999 * 120.00531 * 335.24844 * 4 2 1 6 6 C 1.37876 * 119.99960 * 155.25649 * 4 2 1 7 7 N 1.31522 * 119.99930 * 355.14040 * 6 4 2 8 8 Si 1.86799 * 120.00261 * 175.14554 * 6 4 2 9 9 H 1.48502 * 109.47141 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47168 * 119.99516 * 8 6 4 11 11 H 1.48504 * 109.47275 * 239.99709 * 8 6 4 12 12 O 1.45198 * 109.46921 * 120.00415 * 2 1 3 13 13 C 1.34232 * 116.99922 * 269.99295 * 12 2 1 14 14 O 1.20823 * 119.99656 * 0.02562 * 13 12 2 15 15 C 1.50695 * 120.00128 * 180.02562 * 13 12 2 16 16 C 1.50708 * 109.86845 * 275.44548 * 15 13 12 17 17 C 1.38232 * 120.00013 * 269.02393 * 16 15 13 18 18 C 1.38239 * 119.99483 * 179.74505 * 17 16 15 19 19 C 1.38234 * 120.00031 * 0.53362 * 18 17 16 20 20 C 1.38232 * 120.00051 * 359.74627 * 19 18 17 21 21 C 1.38232 * 119.99992 * 359.97382 * 20 19 18 22 22 C 1.54104 * 109.87959 * 154.28939 * 15 13 12 23 23 C 1.54809 * 104.18482 * 242.60538 * 22 15 13 24 24 C 1.54992 * 102.09489 * 20.88157 * 23 22 15 25 25 O 1.43742 * 109.88193 * 36.45495 * 15 13 12 26 26 H 1.09000 * 109.46670 * 295.03443 * 1 2 3 27 27 H 1.09004 * 109.47112 * 55.02770 * 1 2 3 28 28 H 1.08995 * 109.47504 * 175.03143 * 1 2 3 29 29 H 0.97002 * 119.99675 * 5.13318 * 7 6 4 30 30 H 1.07992 * 120.00232 * 0.02562 * 17 16 15 31 31 H 1.08004 * 120.00066 * 180.29671 * 18 17 16 32 32 H 1.08001 * 120.00020 * 179.77053 * 19 18 17 33 33 H 1.08004 * 120.00216 * 180.02562 * 20 19 18 34 34 H 1.08001 * 120.00071 * 179.97438 * 21 20 19 35 35 H 1.09005 * 110.48516 * 1.28129 * 22 15 13 36 36 H 1.08995 * 110.49098 * 123.92471 * 22 15 13 37 37 H 1.09000 * 110.90691 * 262.67971 * 23 22 15 38 38 H 1.09006 * 110.93549 * 139.08849 * 23 22 15 39 39 H 1.09003 * 110.62096 * 204.47905 * 24 23 22 40 40 H 1.08998 * 110.62245 * 81.47315 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 1.4115 -1.4457 -1.7208 6 6 3.2844 -0.4219 -1.7303 7 7 4.0019 0.5398 -1.1916 8 14 3.9619 -1.3968 -3.1725 9 1 2.9665 -2.4157 -3.5925 10 1 4.2377 -0.4773 -4.3055 11 1 5.2201 -2.0727 -2.7659 12 8 2.0140 -0.6846 1.1855 13 6 2.2172 0.0639 2.2811 14 8 1.9976 1.2516 2.2505 15 6 2.7194 -0.5772 3.5491 16 6 1.5623 -1.1502 4.3263 17 6 0.9165 -0.3786 5.2741 18 6 -0.1482 -0.9026 5.9832 19 6 -0.5600 -2.2018 5.7523 20 6 0.0895 -2.9753 4.8086 21 6 1.1505 -2.4494 4.0954 22 6 3.4637 0.4663 4.4046 23 6 4.9130 -0.0721 4.4836 24 6 4.9735 -1.0226 3.2608 25 8 3.6585 -1.6181 3.2319 26 1 -0.3633 0.4349 0.9311 27 1 -0.3633 0.5891 -0.8421 28 1 -0.3634 -1.0237 -0.0890 29 1 3.6830 0.9960 -0.3972 30 1 1.2409 0.6351 5.4574 31 1 -0.6558 -0.2981 6.7204 32 1 -1.3894 -2.6124 6.3090 33 1 -0.2324 -3.9903 4.6279 34 1 1.6582 -3.0539 3.3583 35 1 3.4450 1.4417 3.9184 36 1 3.0244 0.5268 5.4003 37 1 5.0740 -0.6211 5.4114 38 1 5.6355 0.7379 4.3827 39 1 5.7375 -1.7864 3.4057 40 1 5.1603 -0.4600 2.3462 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347052133.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:46 Heat of formation + Delta-G solvation = -129.916266 kcal Electronic energy + Delta-G solvation = -24177.904010 eV Core-core repulsion = 20728.707274 eV Total energy + Delta-G solvation = -3449.196736 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.21674 -40.37724 -39.38774 -37.69595 -35.31538 -33.76309 -33.05684 -32.14261 -31.76345 -29.26823 -27.00084 -25.84640 -23.94903 -23.89160 -22.94195 -22.18411 -20.93089 -19.41346 -18.90102 -18.62471 -17.71968 -17.09443 -16.71564 -16.38865 -15.91306 -15.73237 -15.69446 -15.64750 -14.87070 -14.58061 -14.34992 -14.24539 -13.95982 -13.68051 -13.30761 -13.17095 -13.10784 -12.92166 -12.73726 -12.41609 -12.35978 -12.24073 -11.98218 -11.94604 -11.86740 -11.78256 -11.42308 -11.04190 -10.76425 -10.64197 -9.89283 -9.81273 -8.91315 -6.71727 0.20292 0.42721 1.18392 1.48036 1.54369 1.76522 1.95915 2.44916 2.51856 2.78764 3.05084 3.34252 3.43160 3.78333 3.87818 3.98908 4.01285 4.10393 4.19376 4.19948 4.28839 4.40423 4.48035 4.51924 4.57083 4.59094 4.64023 4.73723 4.81528 4.83409 4.94239 5.01613 5.06798 5.08765 5.42121 5.47218 5.54127 5.58866 5.70439 5.83312 5.95940 6.01998 6.25628 6.90260 7.17599 8.43306 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.017679 B = 0.005793 C = 0.005157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.444960 B = 4832.106441 C = 5428.188161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.173 3.827 3 H 0.014 0.986 4 C -0.604 4.604 5 H 0.066 0.934 6 C -0.019 4.019 7 N -0.907 5.907 8 Si 1.129 2.871 9 H -0.264 1.264 10 H -0.270 1.270 11 H -0.276 1.276 12 O -0.357 6.357 13 C 0.437 3.563 14 O -0.550 6.550 15 C 0.156 3.844 16 C -0.106 4.106 17 C -0.116 4.116 18 C -0.120 4.120 19 C -0.108 4.108 20 C -0.125 4.125 21 C -0.104 4.104 22 C -0.144 4.144 23 C -0.137 4.137 24 C 0.029 3.971 25 O -0.360 6.360 26 H 0.036 0.964 27 H 0.072 0.928 28 H 0.060 0.940 29 H 0.253 0.747 30 H 0.136 0.864 31 H 0.158 0.842 32 H 0.160 0.840 33 H 0.147 0.853 34 H 0.110 0.890 35 H 0.076 0.924 36 H 0.120 0.880 37 H 0.110 0.890 38 H 0.101 0.899 39 H 0.128 0.872 40 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.298 -5.199 16.301 17.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.121 3.879 3 H 0.032 0.968 4 C -0.640 4.640 5 H 0.085 0.915 6 C -0.220 4.220 7 N -0.542 5.542 8 Si 0.948 3.052 9 H -0.188 1.188 10 H -0.195 1.195 11 H -0.201 1.201 12 O -0.273 6.273 13 C 0.282 3.718 14 O -0.443 6.443 15 C 0.114 3.886 16 C -0.107 4.107 17 C -0.134 4.134 18 C -0.138 4.138 19 C -0.126 4.126 20 C -0.143 4.143 21 C -0.122 4.122 22 C -0.181 4.181 23 C -0.174 4.174 24 C -0.047 4.047 25 O -0.279 6.279 26 H 0.055 0.945 27 H 0.091 0.909 28 H 0.079 0.921 29 H 0.063 0.937 30 H 0.153 0.847 31 H 0.176 0.824 32 H 0.177 0.823 33 H 0.164 0.836 34 H 0.129 0.871 35 H 0.094 0.906 36 H 0.139 0.861 37 H 0.128 0.872 38 H 0.120 0.880 39 H 0.146 0.854 40 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -2.189 -5.181 15.159 16.169 hybrid contribution -1.091 0.840 0.541 1.480 sum -3.280 -4.341 15.700 16.616 Atomic orbital electron populations 1.21892 0.94893 1.01817 1.00517 1.20769 0.92640 0.93210 0.81235 0.96788 1.22374 1.05017 1.27897 1.08730 0.91542 1.27844 0.93951 0.95452 1.04794 1.70875 1.41360 1.20790 1.21216 0.82829 0.75957 0.74777 0.71651 1.18789 1.19501 1.20132 1.86993 1.74885 1.44520 1.20874 1.24793 0.74039 0.85898 0.87116 1.90496 1.50998 1.17822 1.84955 1.20753 0.90916 0.89031 0.87880 1.19410 0.96921 0.95949 0.98376 1.21275 0.96761 1.00005 0.95350 1.21494 0.95971 0.96357 0.99960 1.21644 0.99787 0.94015 0.97119 1.21464 0.95089 1.01421 0.96343 1.21116 0.97161 0.94773 0.99191 1.23212 0.96250 0.97486 1.01137 1.23175 0.95325 0.99808 0.99105 1.23894 0.85096 0.98144 0.97565 1.88963 1.16480 1.31446 1.91002 0.94532 0.90909 0.92140 0.93686 0.84664 0.82425 0.82285 0.83553 0.87143 0.90562 0.86141 0.87153 0.88025 0.85405 0.95134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.42 9.53 71.98 0.69 -5.73 16 2 C 0.17 9.89 2.28 29.85 0.07 9.96 16 3 H 0.01 0.90 5.69 -2.39 -0.01 0.89 16 4 C -0.60 -35.65 8.70 25.60 0.22 -35.43 16 5 H 0.07 3.78 7.81 -2.91 -0.02 3.75 16 6 C -0.02 -1.12 5.45 84.65 0.46 -0.66 16 7 N -0.91 -57.18 13.63 21.45 0.29 -56.89 16 8 Si 1.13 50.14 29.91 68.60 2.05 52.19 16 9 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 10 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 11 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 12 O -0.36 -19.95 9.66 -46.79 -0.45 -20.41 16 13 C 0.44 21.74 6.73 71.23 0.48 22.22 16 14 O -0.55 -29.11 14.79 21.97 0.33 -28.79 16 15 C 0.16 6.04 0.95 -11.91 -0.01 6.03 16 16 C -0.11 -3.60 4.84 -19.86 -0.10 -3.70 16 17 C -0.12 -3.17 8.74 22.27 0.19 -2.98 16 18 C -0.12 -2.53 10.05 22.27 0.22 -2.31 16 19 C -0.11 -2.16 10.05 22.27 0.22 -1.93 16 20 C -0.13 -3.08 10.05 22.27 0.22 -2.85 16 21 C -0.10 -3.41 9.36 22.27 0.21 -3.20 16 22 C -0.14 -4.43 5.64 31.59 0.18 -4.25 16 23 C -0.14 -3.46 7.15 31.89 0.23 -3.23 16 24 C 0.03 0.96 7.66 72.66 0.56 1.52 16 25 O -0.36 -14.36 9.74 -136.97 -1.33 -15.69 16 26 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.07 3.24 8.14 -2.39 -0.02 3.22 16 28 H 0.06 2.73 8.14 -2.39 -0.02 2.71 16 29 H 0.25 16.77 6.66 -92.71 -0.62 16.15 16 30 H 0.14 3.35 6.44 -2.91 -0.02 3.33 16 31 H 0.16 2.20 8.06 -2.91 -0.02 2.18 16 32 H 0.16 1.98 8.06 -2.91 -0.02 1.95 16 33 H 0.15 2.81 8.06 -2.91 -0.02 2.79 16 34 H 0.11 4.01 7.55 -2.91 -0.02 3.99 16 35 H 0.08 2.68 6.74 -2.38 -0.02 2.66 16 36 H 0.12 2.93 5.78 -2.39 -0.01 2.91 16 37 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.10 2.22 8.14 -2.38 -0.02 2.20 16 39 H 0.13 3.36 8.14 -2.39 -0.02 3.34 16 40 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -76.79 334.06 5.92 -70.87 By element: Atomic # 1 Polarization: 24.06 SS G_CDS: 1.19 Total: 25.25 kcal Atomic # 6 Polarization: -30.39 SS G_CDS: 3.85 Total: -26.54 kcal Atomic # 7 Polarization: -57.18 SS G_CDS: 0.29 Total: -56.89 kcal Atomic # 8 Polarization: -63.43 SS G_CDS: -1.46 Total: -64.89 kcal Atomic # 14 Polarization: 50.14 SS G_CDS: 2.05 Total: 52.19 kcal Total: -76.79 5.92 -70.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347052133.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.042 kcal (2) G-P(sol) polarization free energy of solvation -76.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds