Wall clock time and date at job start Tue Mar 31 2020 06:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47583 * 2 1 4 4 C 1.50696 * 109.47276 * 120.00058 * 2 1 3 5 5 H 1.08004 * 120.00219 * 119.99803 * 4 2 1 6 6 C 1.37879 * 119.99914 * 299.99994 * 4 2 1 7 7 N 1.31512 * 120.00041 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99876 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47309 * 90.00035 * 8 6 4 10 10 H 1.48507 * 109.47096 * 209.99884 * 8 6 4 11 11 H 1.48501 * 109.47152 * 330.00003 * 8 6 4 12 12 O 1.45204 * 109.47156 * 240.00143 * 2 1 3 13 13 C 1.34224 * 117.00349 * 89.99938 * 12 2 1 14 14 O 1.20829 * 119.99915 * 0.02562 * 13 12 2 15 15 C 1.50700 * 120.00364 * 180.02562 * 13 12 2 16 16 C 1.50699 * 109.98767 * 276.08439 * 15 13 12 17 17 C 1.38238 * 119.99889 * 268.63999 * 16 15 13 18 18 C 1.38238 * 119.99739 * 179.74357 * 17 16 15 19 19 C 1.38243 * 120.00014 * 0.53391 * 18 17 16 20 20 C 1.38235 * 119.99779 * 359.74227 * 19 18 17 21 21 C 1.38235 * 119.99930 * 88.91452 * 16 15 13 22 22 C 1.54098 * 109.87945 * 155.00103 * 15 13 12 23 23 C 1.54813 * 104.30472 * 242.53799 * 22 15 13 24 24 C 1.55353 * 101.93011 * 20.91817 * 23 22 15 25 25 O 1.43743 * 109.87656 * 37.16382 * 15 13 12 26 26 H 1.09000 * 109.47073 * 300.00445 * 1 2 3 27 27 H 1.09003 * 109.47198 * 59.99885 * 1 2 3 28 28 H 1.08998 * 109.46967 * 179.97438 * 1 2 3 29 29 H 0.97002 * 120.00220 * 179.97438 * 7 6 4 30 30 H 1.07998 * 119.99961 * 0.02562 * 17 16 15 31 31 H 1.08002 * 119.99980 * 180.29355 * 18 17 16 32 32 H 1.07992 * 119.99851 * 179.76356 * 19 18 17 33 33 H 1.07998 * 119.99602 * 179.97438 * 20 19 18 34 34 H 1.07998 * 119.99914 * 0.02562 * 21 16 15 35 35 H 1.09002 * 110.48969 * 1.28135 * 22 15 13 36 36 H 1.09002 * 110.48612 * 123.79802 * 22 15 13 37 37 H 1.09001 * 110.90927 * 139.14314 * 23 22 15 38 38 H 1.08998 * 110.91012 * 262.75131 * 23 22 15 39 39 H 1.09002 * 110.58518 * 204.45470 * 24 23 22 40 40 H 1.09005 * 110.63681 * 81.46830 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3214 -1.1203 4.0079 9 1 3.6297 -0.5459 4.4123 10 1 1.3431 -0.9492 5.1120 11 1 2.4859 -2.5662 3.7118 12 8 2.0140 -0.6845 -1.1856 13 6 2.2172 0.0640 -2.2811 14 8 1.9982 1.2518 -2.2504 15 6 2.7183 -0.5772 -3.5495 16 6 4.2200 -0.6957 -3.5084 17 6 5.0076 0.3176 -4.0219 18 6 6.3853 0.2113 -3.9793 19 6 6.9752 -0.9134 -3.4332 20 6 6.1875 -1.9292 -2.9248 21 6 4.8099 -1.8203 -2.9622 22 6 2.2924 0.2663 -4.7668 23 6 1.3726 -0.6753 -5.5817 24 6 0.9412 -1.7115 -4.5076 25 8 2.1293 -1.8793 -3.7047 26 1 -0.3633 0.5139 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 0.7081 1.1608 3.4844 30 1 4.5467 1.1944 -4.4522 31 1 7.0007 1.0051 -4.3762 32 1 8.0514 -0.9981 -3.4034 33 1 6.6483 -2.8080 -2.4986 34 1 4.1945 -2.6142 -2.5654 35 1 1.7433 1.1511 -4.4446 36 1 3.1635 0.5526 -5.3561 37 1 0.5101 -0.1348 -5.9718 38 1 1.9254 -1.1569 -6.3882 39 1 0.6583 -2.6541 -4.9763 40 1 0.1219 -1.3207 -3.9040 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347052135.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:49 Heat of formation + Delta-G solvation = -103.283225 kcal Electronic energy + Delta-G solvation = -23852.819281 eV Core-core repulsion = 20404.777440 eV Total energy + Delta-G solvation = -3448.041841 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.79726 -38.82997 -38.17721 -35.75366 -33.24542 -32.56388 -31.90497 -30.68126 -29.58545 -28.04429 -25.31692 -24.43867 -22.86094 -22.45054 -21.43501 -20.55468 -19.32818 -17.58133 -17.22145 -16.59786 -16.24456 -15.73782 -15.35244 -14.79810 -14.65197 -14.58231 -14.45172 -13.70317 -13.28308 -13.23691 -12.95692 -12.65186 -12.19866 -12.08775 -11.94665 -11.70171 -11.27470 -11.22916 -11.19809 -11.01359 -10.86725 -10.77201 -10.72969 -10.44275 -10.34495 -10.23779 -9.53392 -9.39396 -8.88930 -8.79729 -8.64358 -8.46322 -6.16233 -4.22522 1.33448 1.52394 2.88302 3.26315 3.31140 3.35175 3.51332 3.70893 3.94187 4.34603 4.48352 4.60072 4.90892 5.00300 5.04616 5.09044 5.16801 5.19643 5.35291 5.47335 5.56889 5.65027 5.70526 5.74617 5.79025 5.87008 5.99335 6.05246 6.14830 6.50729 6.56940 6.62218 6.63458 6.86702 6.90248 6.92146 7.06591 7.16329 7.60992 7.73238 7.92845 8.15726 8.62847 8.90277 9.42560 10.91387 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.015295 B = 0.005647 C = 0.004668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.176372 B = 4956.829847 C = 5996.949385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.212 3.788 3 H 0.045 0.955 4 C -0.518 4.518 5 H 0.069 0.931 6 C 0.062 3.938 7 N -0.891 5.891 8 Si 0.911 3.089 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.271 1.271 12 O -0.337 6.337 13 C 0.450 3.550 14 O -0.515 6.515 15 C 0.159 3.841 16 C -0.083 4.083 17 C -0.105 4.105 18 C -0.126 4.126 19 C -0.115 4.115 20 C -0.124 4.124 21 C -0.076 4.076 22 C -0.147 4.147 23 C -0.152 4.152 24 C 0.040 3.960 25 O -0.340 6.340 26 H 0.100 0.900 27 H 0.014 0.986 28 H 0.037 0.963 29 H 0.266 0.734 30 H 0.127 0.873 31 H 0.123 0.877 32 H 0.121 0.879 33 H 0.124 0.876 34 H 0.134 0.866 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.100 0.900 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.721 -3.594 -16.209 17.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.160 3.840 3 H 0.063 0.937 4 C -0.556 4.556 5 H 0.087 0.913 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.738 3.262 9 H -0.204 1.204 10 H -0.209 1.209 11 H -0.195 1.195 12 O -0.252 6.252 13 C 0.292 3.708 14 O -0.405 6.405 15 C 0.118 3.882 16 C -0.084 4.084 17 C -0.123 4.123 18 C -0.144 4.144 19 C -0.133 4.133 20 C -0.142 4.142 21 C -0.094 4.094 22 C -0.184 4.184 23 C -0.190 4.190 24 C -0.037 4.037 25 O -0.259 6.259 26 H 0.118 0.882 27 H 0.033 0.967 28 H 0.056 0.944 29 H 0.076 0.924 30 H 0.145 0.855 31 H 0.141 0.859 32 H 0.139 0.861 33 H 0.142 0.858 34 H 0.152 0.848 35 H 0.117 0.883 36 H 0.111 0.889 37 H 0.102 0.898 38 H 0.098 0.902 39 H 0.118 0.882 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.623 -3.341 -15.892 17.185 hybrid contribution 0.069 -0.020 0.927 0.930 sum 5.692 -3.361 -14.965 16.360 Atomic orbital electron populations 1.22148 0.97531 1.00121 1.01274 1.20677 0.91428 0.93888 0.78045 0.93743 1.21023 1.32304 1.13416 0.88819 0.91273 1.24882 0.94940 0.95120 0.99035 1.69899 1.36158 1.22687 1.24119 0.86283 0.78546 0.79977 0.81409 1.20396 1.20933 1.19536 1.86559 1.74745 1.43066 1.20794 1.23532 0.74712 0.85983 0.86622 1.90583 1.48708 1.16684 1.84567 1.20544 0.91361 0.84827 0.91508 1.19335 0.91704 0.96221 1.01115 1.21058 0.93830 0.98161 0.99254 1.21047 0.94339 0.98213 1.00799 1.21188 0.99744 0.94086 0.98290 1.21172 0.93597 0.99307 1.00089 1.21108 0.94820 0.97418 0.96048 1.23177 1.01450 0.99520 0.94235 1.23223 0.99898 0.97263 0.98581 1.23753 0.88561 0.99995 0.91385 1.89002 1.39452 1.24919 1.72504 0.88204 0.96729 0.94361 0.92439 0.85475 0.85896 0.86104 0.85763 0.84766 0.88264 0.88867 0.89752 0.90184 0.88233 0.91694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.99 9.33 37.16 0.35 -3.64 16 2 C 0.21 5.91 2.56 -27.89 -0.07 5.84 16 3 H 0.04 1.37 7.16 -51.93 -0.37 0.99 16 4 C -0.52 -15.00 8.90 -34.44 -0.31 -15.30 16 5 H 0.07 1.99 7.81 -52.48 -0.41 1.58 16 6 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -25.76 11.32 55.43 0.63 -25.13 16 8 Si 0.91 21.53 29.54 -169.99 -5.02 16.51 16 9 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 12 O -0.34 -8.56 9.67 -44.03 -0.43 -8.98 16 13 C 0.45 10.05 6.74 36.01 0.24 10.30 16 14 O -0.51 -12.43 14.77 -18.75 -0.28 -12.70 16 15 C 0.16 2.76 0.95 -92.35 -0.09 2.67 16 16 C -0.08 -1.37 4.85 -104.62 -0.51 -1.88 16 17 C -0.11 -1.50 8.74 -39.58 -0.35 -1.84 16 18 C -0.13 -1.56 10.05 -39.58 -0.40 -1.96 16 19 C -0.12 -1.40 10.05 -39.58 -0.40 -1.80 16 20 C -0.12 -1.66 10.05 -39.58 -0.40 -2.06 16 21 C -0.08 -1.22 9.36 -39.58 -0.37 -1.59 16 22 C -0.15 -2.00 5.63 -25.20 -0.14 -2.15 16 23 C -0.15 -1.66 7.18 -24.53 -0.18 -1.83 16 24 C 0.04 0.52 7.67 38.41 0.29 0.81 16 25 O -0.34 -5.74 9.76 -47.51 -0.46 -6.20 16 26 H 0.10 2.76 6.07 -51.93 -0.32 2.44 16 27 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 30 H 0.13 1.61 6.41 -52.49 -0.34 1.28 16 31 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 32 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 33 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 34 H 0.13 2.22 7.56 -52.49 -0.40 1.83 16 35 H 0.10 1.48 6.72 -51.93 -0.35 1.13 16 36 H 0.09 1.08 5.73 -51.93 -0.30 0.78 16 37 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 332.53 15.07 5.01 5.01 Total: -1.00 -32.53 332.53 -8.38 -40.90 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -5.42 Total: 3.38 kcal Atomic # 6 Polarization: -10.37 SS G_CDS: -2.41 Total: -12.78 kcal Atomic # 7 Polarization: -25.76 SS G_CDS: 0.63 Total: -25.13 kcal Atomic # 8 Polarization: -26.72 SS G_CDS: -1.17 Total: -27.89 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.53 -8.38 -40.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347052135.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.380 kcal (2) G-P(sol) polarization free energy of solvation -32.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds