Wall clock time and date at job start Tue Mar 31 2020 06:24:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47583 * 2 1 4 4 C 1.50696 * 109.47276 * 120.00058 * 2 1 3 5 5 H 1.08004 * 120.00219 * 119.99803 * 4 2 1 6 6 C 1.37879 * 119.99914 * 299.99994 * 4 2 1 7 7 N 1.31512 * 120.00041 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99876 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47309 * 90.00035 * 8 6 4 10 10 H 1.48507 * 109.47096 * 209.99884 * 8 6 4 11 11 H 1.48501 * 109.47152 * 330.00003 * 8 6 4 12 12 O 1.45204 * 109.47156 * 240.00143 * 2 1 3 13 13 C 1.34224 * 117.00349 * 89.99938 * 12 2 1 14 14 O 1.20829 * 119.99915 * 0.02562 * 13 12 2 15 15 C 1.50700 * 120.00364 * 180.02562 * 13 12 2 16 16 C 1.50699 * 109.98767 * 276.08439 * 15 13 12 17 17 C 1.38238 * 119.99889 * 268.63999 * 16 15 13 18 18 C 1.38238 * 119.99739 * 179.74357 * 17 16 15 19 19 C 1.38243 * 120.00014 * 0.53391 * 18 17 16 20 20 C 1.38235 * 119.99779 * 359.74227 * 19 18 17 21 21 C 1.38235 * 119.99930 * 88.91452 * 16 15 13 22 22 C 1.54098 * 109.87945 * 155.00103 * 15 13 12 23 23 C 1.54813 * 104.30472 * 242.53799 * 22 15 13 24 24 C 1.55353 * 101.93011 * 20.91817 * 23 22 15 25 25 O 1.43743 * 109.87656 * 37.16382 * 15 13 12 26 26 H 1.09000 * 109.47073 * 300.00445 * 1 2 3 27 27 H 1.09003 * 109.47198 * 59.99885 * 1 2 3 28 28 H 1.08998 * 109.46967 * 179.97438 * 1 2 3 29 29 H 0.97002 * 120.00220 * 179.97438 * 7 6 4 30 30 H 1.07998 * 119.99961 * 0.02562 * 17 16 15 31 31 H 1.08002 * 119.99980 * 180.29355 * 18 17 16 32 32 H 1.07992 * 119.99851 * 179.76356 * 19 18 17 33 33 H 1.07998 * 119.99602 * 179.97438 * 20 19 18 34 34 H 1.07998 * 119.99914 * 0.02562 * 21 16 15 35 35 H 1.09002 * 110.48969 * 1.28135 * 22 15 13 36 36 H 1.09002 * 110.48612 * 123.79802 * 22 15 13 37 37 H 1.09001 * 110.90927 * 139.14314 * 23 22 15 38 38 H 1.08998 * 110.91012 * 262.75131 * 23 22 15 39 39 H 1.09002 * 110.58518 * 204.45470 * 24 23 22 40 40 H 1.09005 * 110.63681 * 81.46830 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3214 -1.1203 4.0079 9 1 3.6297 -0.5459 4.4123 10 1 1.3431 -0.9492 5.1120 11 1 2.4859 -2.5662 3.7118 12 8 2.0140 -0.6845 -1.1856 13 6 2.2172 0.0640 -2.2811 14 8 1.9982 1.2518 -2.2504 15 6 2.7183 -0.5772 -3.5495 16 6 4.2200 -0.6957 -3.5084 17 6 5.0076 0.3176 -4.0219 18 6 6.3853 0.2113 -3.9793 19 6 6.9752 -0.9134 -3.4332 20 6 6.1875 -1.9292 -2.9248 21 6 4.8099 -1.8203 -2.9622 22 6 2.2924 0.2663 -4.7668 23 6 1.3726 -0.6753 -5.5817 24 6 0.9412 -1.7115 -4.5076 25 8 2.1293 -1.8793 -3.7047 26 1 -0.3633 0.5139 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 0.7081 1.1608 3.4844 30 1 4.5467 1.1944 -4.4522 31 1 7.0007 1.0051 -4.3762 32 1 8.0514 -0.9981 -3.4034 33 1 6.6483 -2.8080 -2.4986 34 1 4.1945 -2.6142 -2.5654 35 1 1.7433 1.1511 -4.4446 36 1 3.1635 0.5526 -5.3561 37 1 0.5101 -0.1348 -5.9718 38 1 1.9254 -1.1569 -6.3882 39 1 0.6583 -2.6541 -4.9763 40 1 0.1219 -1.3207 -3.9040 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347052135.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:48 Heat of formation + Delta-G solvation = -121.503955 kcal Electronic energy + Delta-G solvation = -23853.609391 eV Core-core repulsion = 20404.777440 eV Total energy + Delta-G solvation = -3448.831951 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.22697 -40.37595 -39.34199 -37.69710 -35.38673 -33.74086 -32.99486 -31.72849 -31.69722 -29.21808 -27.52254 -25.84009 -23.91038 -23.88361 -22.76967 -22.05420 -20.90491 -19.11759 -18.68231 -18.48060 -17.76158 -17.27300 -16.76237 -16.38054 -16.27623 -15.77163 -15.67156 -15.07379 -14.82507 -14.38117 -14.23600 -14.10953 -14.00103 -13.66628 -13.24666 -13.24089 -13.05096 -12.89655 -12.77603 -12.44755 -12.29715 -12.23879 -12.18816 -11.94428 -11.83334 -11.71888 -11.63530 -11.05688 -10.83813 -10.63803 -9.85771 -9.78282 -8.32963 -6.50173 0.22149 0.46160 1.14842 1.37919 1.40524 1.52191 1.89563 2.36597 2.54676 2.83414 2.97141 3.36908 3.47761 3.70782 3.93972 4.02367 4.05936 4.13380 4.24238 4.32091 4.43587 4.54163 4.60430 4.63722 4.69566 4.71458 4.75452 4.81842 4.89005 4.98205 5.05371 5.09345 5.12089 5.42400 5.45753 5.49633 5.55014 5.57123 5.72190 5.84030 5.99789 6.04977 6.53068 6.84987 7.21173 8.75078 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.015295 B = 0.005647 C = 0.004668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.176372 B = 4956.829847 C = 5996.949385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.215 3.785 3 H 0.004 0.996 4 C -0.549 4.549 5 H 0.063 0.937 6 C 0.018 3.982 7 N -0.916 5.916 8 Si 0.983 3.017 9 H -0.270 1.270 10 H -0.271 1.271 11 H -0.264 1.264 12 O -0.351 6.351 13 C 0.441 3.559 14 O -0.541 6.541 15 C 0.164 3.836 16 C -0.111 4.111 17 C -0.116 4.116 18 C -0.123 4.123 19 C -0.110 4.110 20 C -0.129 4.129 21 C -0.103 4.103 22 C -0.145 4.145 23 C -0.137 4.137 24 C 0.026 3.974 25 O -0.359 6.359 26 H 0.084 0.916 27 H 0.022 0.978 28 H 0.044 0.956 29 H 0.272 0.728 30 H 0.139 0.861 31 H 0.157 0.843 32 H 0.157 0.843 33 H 0.145 0.855 34 H 0.114 0.886 35 H 0.081 0.919 36 H 0.117 0.883 37 H 0.106 0.894 38 H 0.105 0.895 39 H 0.130 0.870 40 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.386 -4.233 -17.309 19.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.161 3.839 3 H 0.022 0.978 4 C -0.587 4.587 5 H 0.081 0.919 6 C -0.182 4.182 7 N -0.554 5.554 8 Si 0.805 3.195 9 H -0.196 1.196 10 H -0.196 1.196 11 H -0.188 1.188 12 O -0.266 6.266 13 C 0.284 3.716 14 O -0.432 6.432 15 C 0.123 3.877 16 C -0.111 4.111 17 C -0.133 4.133 18 C -0.141 4.141 19 C -0.127 4.127 20 C -0.147 4.147 21 C -0.121 4.121 22 C -0.182 4.182 23 C -0.175 4.175 24 C -0.050 4.050 25 O -0.278 6.278 26 H 0.102 0.898 27 H 0.041 0.959 28 H 0.063 0.937 29 H 0.082 0.918 30 H 0.156 0.844 31 H 0.175 0.825 32 H 0.175 0.825 33 H 0.163 0.837 34 H 0.133 0.867 35 H 0.100 0.900 36 H 0.135 0.865 37 H 0.125 0.875 38 H 0.123 0.877 39 H 0.148 0.852 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 7.279 -3.980 -17.021 18.935 hybrid contribution -0.415 0.216 1.224 1.310 sum 6.864 -3.764 -15.797 17.630 Atomic orbital electron populations 1.21956 0.96541 1.00306 1.00827 1.20399 0.92193 0.91914 0.79351 0.97780 1.21249 1.33541 1.13866 0.90010 0.91898 1.25839 0.94606 0.95672 1.02073 1.70007 1.36416 1.23634 1.25336 0.85187 0.78316 0.78887 0.77075 1.19555 1.19563 1.18799 1.86564 1.75302 1.43503 1.21226 1.24835 0.73565 0.85963 0.87208 1.90545 1.49699 1.17886 1.85085 1.20646 0.92187 0.85386 0.89529 1.19454 0.91165 0.97431 1.03044 1.21308 0.94839 0.97854 0.99343 1.21496 0.93793 0.99083 0.99697 1.21638 1.01472 0.93103 0.96525 1.21472 0.92619 1.00667 0.99898 1.21146 0.96126 0.97384 0.97415 1.23240 1.02834 0.98866 0.93308 1.23245 1.00273 0.95994 0.97942 1.24066 0.86952 1.02377 0.91625 1.88995 1.40663 1.24824 1.73332 0.89768 0.95904 0.93694 0.91838 0.84355 0.82547 0.82545 0.83743 0.86746 0.90002 0.86500 0.87526 0.87680 0.85227 0.93492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.52 9.33 71.98 0.67 -6.85 16 2 C 0.21 12.59 2.56 29.85 0.08 12.66 16 3 H 0.00 0.29 7.16 -2.39 -0.02 0.27 16 4 C -0.55 -32.91 8.90 25.60 0.23 -32.68 16 5 H 0.06 3.74 7.81 -2.91 -0.02 3.72 16 6 C 0.02 1.02 5.30 84.66 0.45 1.47 16 7 N -0.92 -53.97 11.32 21.45 0.24 -53.73 16 8 Si 0.98 44.19 29.54 68.60 2.03 46.22 16 9 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 10 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 11 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 12 O -0.35 -18.81 9.67 -46.77 -0.45 -19.26 16 13 C 0.44 20.67 6.74 71.24 0.48 21.15 16 14 O -0.54 -27.47 14.77 21.95 0.32 -27.15 16 15 C 0.16 5.81 0.95 -11.91 -0.01 5.80 16 16 C -0.11 -3.66 4.85 -19.87 -0.10 -3.76 16 17 C -0.12 -3.15 8.74 22.27 0.19 -2.96 16 18 C -0.12 -2.70 10.05 22.27 0.22 -2.48 16 19 C -0.11 -2.34 10.05 22.27 0.22 -2.12 16 20 C -0.13 -3.31 10.05 22.27 0.22 -3.08 16 21 C -0.10 -3.35 9.36 22.27 0.21 -3.14 16 22 C -0.15 -3.88 5.63 31.58 0.18 -3.70 16 23 C -0.14 -2.72 7.18 32.02 0.23 -2.49 16 24 C 0.03 0.65 7.67 72.79 0.56 1.21 16 25 O -0.36 -12.37 9.76 -137.24 -1.34 -13.71 16 26 H 0.08 4.82 6.07 -2.39 -0.01 4.81 16 27 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.04 2.31 8.14 -2.39 -0.02 2.29 16 29 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 30 H 0.14 3.32 6.41 -2.91 -0.02 3.30 16 31 H 0.16 2.35 8.06 -2.91 -0.02 2.32 16 32 H 0.16 2.21 8.06 -2.91 -0.02 2.18 16 33 H 0.14 2.98 8.06 -2.91 -0.02 2.95 16 34 H 0.11 4.05 7.56 -2.91 -0.02 4.02 16 35 H 0.08 2.47 6.72 -2.39 -0.02 2.45 16 36 H 0.12 2.52 5.73 -2.39 -0.01 2.50 16 37 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.13 2.46 8.14 -2.39 -0.02 2.44 16 40 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 Total: -1.00 -73.97 332.53 5.68 -68.29 By element: Atomic # 1 Polarization: 19.28 SS G_CDS: 1.04 Total: 20.32 kcal Atomic # 6 Polarization: -24.81 SS G_CDS: 3.84 Total: -20.97 kcal Atomic # 7 Polarization: -53.97 SS G_CDS: 0.24 Total: -53.73 kcal Atomic # 8 Polarization: -58.66 SS G_CDS: -1.47 Total: -60.12 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -73.97 5.68 -68.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347052135.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.215 kcal (2) G-P(sol) polarization free energy of solvation -73.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds