Wall clock time and date at job start Tue Mar 31 2020 06:24:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.47211 * 2 1 4 4 C 1.50699 * 109.47412 * 120.00142 * 2 1 3 5 5 H 1.08000 * 120.00285 * 119.99249 * 4 2 1 6 6 C 1.37878 * 120.00006 * 300.00172 * 4 2 1 7 7 N 1.31519 * 120.00172 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00281 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47406 * 89.99551 * 8 6 4 10 10 H 1.48503 * 109.47338 * 209.99727 * 8 6 4 11 11 H 1.48507 * 109.46930 * 329.99989 * 8 6 4 12 12 O 1.45200 * 109.47072 * 240.00033 * 2 1 3 13 13 C 1.34229 * 116.99742 * 89.99850 * 12 2 1 14 14 O 1.20821 * 120.00363 * 0.02562 * 13 12 2 15 15 C 1.50705 * 119.99743 * 179.97438 * 13 12 2 16 16 C 1.50706 * 109.86765 * 83.99553 * 15 13 12 17 17 C 1.38239 * 119.99672 * 90.73370 * 16 15 13 18 18 C 1.38238 * 119.99446 * 179.76701 * 17 16 15 19 19 C 1.38235 * 120.00155 * 0.48653 * 18 17 16 20 20 C 1.38230 * 120.00072 * 359.78738 * 19 18 17 21 21 C 1.38227 * 119.99906 * 271.00928 * 16 15 13 22 22 C 1.54098 * 109.87915 * 204.99984 * 15 13 12 23 23 C 1.54813 * 104.30472 * 117.48151 * 22 15 13 24 24 C 1.55227 * 101.98357 * 339.26359 * 23 22 15 25 25 O 1.43744 * 110.00723 * 322.91103 * 15 13 12 26 26 H 1.08996 * 109.47469 * 180.02562 * 1 2 3 27 27 H 1.09010 * 109.46948 * 299.99607 * 1 2 3 28 28 H 1.09002 * 109.47254 * 59.99444 * 1 2 3 29 29 H 0.96998 * 120.00100 * 180.02562 * 7 6 4 30 30 H 1.08003 * 120.00113 * 359.97438 * 17 16 15 31 31 H 1.08001 * 119.99756 * 180.24798 * 18 17 16 32 32 H 1.07995 * 119.99980 * 179.77137 * 19 18 17 33 33 H 1.08004 * 120.00417 * 179.97438 * 20 19 18 34 34 H 1.07997 * 120.00626 * 359.97438 * 21 16 15 35 35 H 1.09002 * 110.48969 * 236.22487 * 22 15 13 36 36 H 1.09002 * 110.48612 * 358.74153 * 22 15 13 37 37 H 1.08999 * 110.90868 * 97.38351 * 23 22 15 38 38 H 1.09003 * 110.91016 * 220.99202 * 23 22 15 39 39 H 1.09002 * 110.51777 * 278.38206 * 24 23 22 40 40 H 1.09000 * 110.77540 * 155.50397 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9435 0.8301 2.6035 8 14 2.3214 -1.1204 4.0079 9 1 3.6297 -0.5460 4.4123 10 1 1.3432 -0.9493 5.1121 11 1 2.4859 -2.5663 3.7119 12 8 2.0139 -0.6845 -1.1856 13 6 2.2170 0.0641 -2.2811 14 8 1.9981 1.2519 -2.2503 15 6 2.7192 -0.5770 -3.5492 16 6 1.5637 -1.1622 -4.3196 17 6 0.9044 -0.3973 -5.2637 18 6 -0.1524 -0.9357 -5.9738 19 6 -0.5563 -2.2356 -5.7328 20 6 0.0994 -2.9985 -4.7847 21 6 1.1596 -2.4618 -4.0783 22 6 3.4479 0.4706 -4.4129 23 6 4.9027 -0.0514 -4.5012 24 6 4.9792 -1.0012 -3.2758 25 8 3.6700 -1.6085 -3.2357 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 0.7095 1.1617 3.4845 30 1 1.2171 0.6198 -5.4488 31 1 -0.6650 -0.3395 -6.7142 32 1 -1.3843 -2.6549 -6.2849 33 1 -0.2164 -4.0140 -4.5961 34 1 1.6721 -3.0581 -3.3379 35 1 3.0010 0.5243 -5.4056 36 1 3.4218 1.4477 -3.9304 37 1 5.0634 -0.6003 -5.4290 38 1 5.6162 0.7672 -4.4065 39 1 5.1674 -0.4342 -2.3641 40 1 5.7494 -1.7587 -3.4212 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347052136.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:51 Heat of formation + Delta-G solvation = -103.602777 kcal Electronic energy + Delta-G solvation = -23846.485246 eV Core-core repulsion = 20398.429548 eV Total energy + Delta-G solvation = -3448.055698 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.79733 -38.84322 -38.18601 -35.75240 -33.24426 -32.56649 -31.90717 -30.71259 -29.58633 -28.04847 -25.31120 -24.43063 -22.87396 -22.44519 -21.45582 -20.55893 -19.32350 -17.57085 -17.23826 -16.64824 -16.19087 -15.71256 -15.36154 -14.79668 -14.69452 -14.59936 -14.46327 -13.67897 -13.27086 -13.25767 -13.01345 -12.66532 -12.19642 -12.04187 -11.84770 -11.79272 -11.33889 -11.23972 -11.08518 -11.05615 -10.87622 -10.81130 -10.72730 -10.41599 -10.32539 -10.23727 -9.53221 -9.39132 -8.88253 -8.83513 -8.66858 -8.47109 -6.16334 -4.22849 1.30091 1.48472 2.88179 3.25850 3.30912 3.35012 3.50971 3.72060 3.91411 4.34381 4.49015 4.60288 4.91873 4.99695 5.02782 5.07730 5.16553 5.17710 5.35370 5.48376 5.55212 5.64164 5.71490 5.76194 5.80381 5.87650 5.97988 6.05484 6.11878 6.47519 6.54627 6.59052 6.65097 6.87264 6.92318 6.93825 7.03159 7.16904 7.61143 7.73718 7.93159 8.15916 8.62856 8.90273 9.42323 10.91220 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.017514 B = 0.005145 C = 0.004604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.301313 B = 5440.353054 C = 6079.848106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.212 3.788 3 H 0.045 0.955 4 C -0.518 4.518 5 H 0.069 0.931 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.911 3.089 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.271 1.271 12 O -0.337 6.337 13 C 0.450 3.550 14 O -0.515 6.515 15 C 0.158 3.842 16 C -0.083 4.083 17 C -0.105 4.105 18 C -0.126 4.126 19 C -0.115 4.115 20 C -0.124 4.124 21 C -0.077 4.077 22 C -0.146 4.146 23 C -0.152 4.152 24 C 0.040 3.960 25 O -0.340 6.340 26 H 0.037 0.963 27 H 0.099 0.901 28 H 0.014 0.986 29 H 0.266 0.734 30 H 0.128 0.872 31 H 0.123 0.877 32 H 0.121 0.879 33 H 0.124 0.876 34 H 0.135 0.865 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.066 0.934 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.925 -4.058 -17.044 17.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.160 3.840 3 H 0.062 0.938 4 C -0.556 4.556 5 H 0.088 0.912 6 C -0.140 4.140 7 N -0.528 5.528 8 Si 0.738 3.262 9 H -0.204 1.204 10 H -0.209 1.209 11 H -0.195 1.195 12 O -0.252 6.252 13 C 0.291 3.709 14 O -0.405 6.405 15 C 0.117 3.883 16 C -0.083 4.083 17 C -0.123 4.123 18 C -0.144 4.144 19 C -0.134 4.134 20 C -0.142 4.142 21 C -0.095 4.095 22 C -0.184 4.184 23 C -0.190 4.190 24 C -0.037 4.037 25 O -0.259 6.259 26 H 0.056 0.944 27 H 0.118 0.882 28 H 0.034 0.966 29 H 0.076 0.924 30 H 0.146 0.854 31 H 0.141 0.859 32 H 0.139 0.861 33 H 0.142 0.858 34 H 0.153 0.847 35 H 0.111 0.889 36 H 0.118 0.882 37 H 0.098 0.902 38 H 0.103 0.897 39 H 0.085 0.915 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 2.703 -3.826 -16.764 17.406 hybrid contribution 0.183 -0.007 0.952 0.969 sum 2.887 -3.833 -15.812 16.524 Atomic orbital electron populations 1.22146 0.97526 1.00146 1.01305 1.20675 0.91456 0.93839 0.78029 0.93765 1.21027 1.32333 1.13434 0.88805 0.91245 1.24889 0.94937 0.95124 0.99041 1.69905 1.36163 1.22647 1.24118 0.86277 0.78516 0.79976 0.81404 1.20412 1.20949 1.19541 1.86562 1.74682 1.43108 1.20815 1.23535 0.75227 0.85799 0.86299 1.90581 1.49129 1.16629 1.84195 1.20546 0.89697 0.88316 0.89743 1.19353 0.96545 0.95185 0.97222 1.21067 0.96023 0.99716 0.95492 1.21051 0.97289 0.95747 1.00314 1.21187 0.99561 0.94517 0.98087 1.21176 0.96163 1.00201 0.96688 1.21119 0.95571 0.94647 0.98202 1.23170 0.94889 0.99529 1.00761 1.23200 0.96432 0.99876 0.99457 1.23734 0.85725 0.96708 0.97528 1.88995 1.15043 1.30924 1.90893 0.94401 0.88225 0.96645 0.92439 0.85447 0.85883 0.86098 0.85765 0.84747 0.88929 0.88236 0.90236 0.89715 0.91540 0.88216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.06 9.33 37.15 0.35 -3.72 16 2 C 0.21 5.92 2.56 -27.89 -0.07 5.85 16 3 H 0.04 1.35 7.16 -51.93 -0.37 0.98 16 4 C -0.52 -14.93 8.90 -34.44 -0.31 -15.24 16 5 H 0.07 1.98 7.81 -52.49 -0.41 1.57 16 6 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -25.70 11.32 55.43 0.63 -25.08 16 8 Si 0.91 21.41 29.54 -169.99 -5.02 16.39 16 9 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 12 O -0.34 -8.56 9.67 -44.01 -0.43 -8.98 16 13 C 0.45 10.04 6.75 36.01 0.24 10.29 16 14 O -0.51 -12.41 14.77 -18.75 -0.28 -12.69 16 15 C 0.16 2.74 0.95 -92.35 -0.09 2.66 16 16 C -0.08 -1.33 4.84 -104.62 -0.51 -1.84 16 17 C -0.11 -1.46 8.73 -39.58 -0.35 -1.81 16 18 C -0.13 -1.51 10.05 -39.58 -0.40 -1.91 16 19 C -0.12 -1.35 10.05 -39.59 -0.40 -1.75 16 20 C -0.12 -1.61 10.05 -39.58 -0.40 -2.01 16 21 C -0.08 -1.21 9.36 -39.58 -0.37 -1.58 16 22 C -0.15 -2.02 5.63 -25.20 -0.14 -2.16 16 23 C -0.15 -1.70 7.17 -24.60 -0.18 -1.87 16 24 C 0.04 0.53 7.67 38.34 0.29 0.83 16 25 O -0.34 -5.81 9.77 -47.35 -0.46 -6.27 16 26 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.10 2.78 6.07 -51.92 -0.32 2.46 16 28 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.27 7.20 8.31 -40.82 -0.34 6.87 16 30 H 0.13 1.59 6.45 -52.48 -0.34 1.25 16 31 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 32 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 33 H 0.12 1.31 8.06 -52.48 -0.42 0.89 16 34 H 0.13 2.18 7.56 -52.49 -0.40 1.78 16 35 H 0.09 1.07 5.77 -51.93 -0.30 0.77 16 36 H 0.10 1.50 6.72 -51.93 -0.35 1.15 16 37 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 LS Contribution 332.58 15.07 5.01 5.01 Total: -1.00 -32.41 332.58 -8.38 -40.79 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -5.42 Total: 3.44 kcal Atomic # 6 Polarization: -10.21 SS G_CDS: -2.41 Total: -12.62 kcal Atomic # 7 Polarization: -25.70 SS G_CDS: 0.63 Total: -25.08 kcal Atomic # 8 Polarization: -26.78 SS G_CDS: -1.17 Total: -27.94 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.41 -8.38 -40.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347052136.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.812 kcal (2) G-P(sol) polarization free energy of solvation -32.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds