Wall clock time and date at job start Tue Mar 31 2020 06:24:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.47211 * 2 1 4 4 C 1.50699 * 109.47412 * 120.00142 * 2 1 3 5 5 H 1.08000 * 120.00285 * 119.99249 * 4 2 1 6 6 C 1.37878 * 120.00006 * 300.00172 * 4 2 1 7 7 N 1.31519 * 120.00172 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00281 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47406 * 89.99551 * 8 6 4 10 10 H 1.48503 * 109.47338 * 209.99727 * 8 6 4 11 11 H 1.48507 * 109.46930 * 329.99989 * 8 6 4 12 12 O 1.45200 * 109.47072 * 240.00033 * 2 1 3 13 13 C 1.34229 * 116.99742 * 89.99850 * 12 2 1 14 14 O 1.20821 * 120.00363 * 0.02562 * 13 12 2 15 15 C 1.50705 * 119.99743 * 179.97438 * 13 12 2 16 16 C 1.50706 * 109.86765 * 83.99553 * 15 13 12 17 17 C 1.38239 * 119.99672 * 90.73370 * 16 15 13 18 18 C 1.38238 * 119.99446 * 179.76701 * 17 16 15 19 19 C 1.38235 * 120.00155 * 0.48653 * 18 17 16 20 20 C 1.38230 * 120.00072 * 359.78738 * 19 18 17 21 21 C 1.38227 * 119.99906 * 271.00928 * 16 15 13 22 22 C 1.54098 * 109.87915 * 204.99984 * 15 13 12 23 23 C 1.54813 * 104.30472 * 117.48151 * 22 15 13 24 24 C 1.55227 * 101.98357 * 339.26359 * 23 22 15 25 25 O 1.43744 * 110.00723 * 322.91103 * 15 13 12 26 26 H 1.08996 * 109.47469 * 180.02562 * 1 2 3 27 27 H 1.09010 * 109.46948 * 299.99607 * 1 2 3 28 28 H 1.09002 * 109.47254 * 59.99444 * 1 2 3 29 29 H 0.96998 * 120.00100 * 180.02562 * 7 6 4 30 30 H 1.08003 * 120.00113 * 359.97438 * 17 16 15 31 31 H 1.08001 * 119.99756 * 180.24798 * 18 17 16 32 32 H 1.07995 * 119.99980 * 179.77137 * 19 18 17 33 33 H 1.08004 * 120.00417 * 179.97438 * 20 19 18 34 34 H 1.07997 * 120.00626 * 359.97438 * 21 16 15 35 35 H 1.09002 * 110.48969 * 236.22487 * 22 15 13 36 36 H 1.09002 * 110.48612 * 358.74153 * 22 15 13 37 37 H 1.08999 * 110.90868 * 97.38351 * 23 22 15 38 38 H 1.09003 * 110.91016 * 220.99202 * 23 22 15 39 39 H 1.09002 * 110.51777 * 278.38206 * 24 23 22 40 40 H 1.09000 * 110.77540 * 155.50397 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9435 0.8301 2.6035 8 14 2.3214 -1.1204 4.0079 9 1 3.6297 -0.5460 4.4123 10 1 1.3432 -0.9493 5.1121 11 1 2.4859 -2.5663 3.7119 12 8 2.0139 -0.6845 -1.1856 13 6 2.2170 0.0641 -2.2811 14 8 1.9981 1.2519 -2.2503 15 6 2.7192 -0.5770 -3.5492 16 6 1.5637 -1.1622 -4.3196 17 6 0.9044 -0.3973 -5.2637 18 6 -0.1524 -0.9357 -5.9738 19 6 -0.5563 -2.2356 -5.7328 20 6 0.0994 -2.9985 -4.7847 21 6 1.1596 -2.4618 -4.0783 22 6 3.4479 0.4706 -4.4129 23 6 4.9027 -0.0514 -4.5012 24 6 4.9792 -1.0012 -3.2758 25 8 3.6700 -1.6085 -3.2357 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 0.7095 1.1617 3.4845 30 1 1.2171 0.6198 -5.4488 31 1 -0.6650 -0.3395 -6.7142 32 1 -1.3843 -2.6549 -6.2849 33 1 -0.2164 -4.0140 -4.5961 34 1 1.6721 -3.0581 -3.3379 35 1 3.0010 0.5243 -5.4056 36 1 3.4218 1.4477 -3.9304 37 1 5.0634 -0.6003 -5.4290 38 1 5.6162 0.7672 -4.4065 39 1 5.1674 -0.4342 -2.3641 40 1 5.7494 -1.7587 -3.4212 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347052136.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:51 Heat of formation + Delta-G solvation = -121.720745 kcal Electronic energy + Delta-G solvation = -23847.270900 eV Core-core repulsion = 20398.429548 eV Total energy + Delta-G solvation = -3448.841352 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.22928 -40.37788 -39.34948 -37.69964 -35.38562 -33.74123 -32.99934 -31.73020 -31.70846 -29.21952 -27.52382 -25.84752 -23.90951 -23.85650 -22.80967 -22.04644 -20.89936 -19.12005 -18.65003 -18.53588 -17.76637 -17.19384 -16.79756 -16.39197 -16.30545 -15.76904 -15.66942 -15.06499 -14.79536 -14.37242 -14.30781 -14.16886 -13.91626 -13.62625 -13.35674 -13.15446 -13.04059 -12.88973 -12.81915 -12.44937 -12.30778 -12.25735 -12.17950 -11.94404 -11.83236 -11.70985 -11.64301 -11.05704 -10.83969 -10.63875 -9.85858 -9.78571 -8.32703 -6.50130 0.22226 0.46019 1.14383 1.38589 1.41150 1.52973 1.89600 2.36944 2.54423 2.83143 2.97428 3.36706 3.47403 3.71259 3.93137 4.02213 4.05321 4.13514 4.24318 4.32184 4.43002 4.54077 4.60638 4.63580 4.69328 4.70885 4.75167 4.81240 4.88486 4.98040 5.04701 5.08772 5.12137 5.42244 5.45675 5.49940 5.54307 5.57290 5.72049 5.83577 5.99701 6.04878 6.53324 6.84857 7.21336 8.75372 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.017514 B = 0.005145 C = 0.004604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.301313 B = 5440.353054 C = 6079.848106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.215 3.785 3 H 0.006 0.994 4 C -0.549 4.549 5 H 0.063 0.937 6 C 0.018 3.982 7 N -0.916 5.916 8 Si 0.984 3.016 9 H -0.270 1.270 10 H -0.272 1.272 11 H -0.264 1.264 12 O -0.351 6.351 13 C 0.440 3.560 14 O -0.540 6.540 15 C 0.163 3.837 16 C -0.109 4.109 17 C -0.116 4.116 18 C -0.122 4.122 19 C -0.109 4.109 20 C -0.128 4.128 21 C -0.103 4.103 22 C -0.145 4.145 23 C -0.137 4.137 24 C 0.026 3.974 25 O -0.359 6.359 26 H 0.043 0.957 27 H 0.084 0.916 28 H 0.019 0.981 29 H 0.272 0.728 30 H 0.138 0.862 31 H 0.157 0.843 32 H 0.157 0.843 33 H 0.145 0.855 34 H 0.114 0.886 35 H 0.118 0.882 36 H 0.080 0.920 37 H 0.106 0.894 38 H 0.105 0.895 39 H 0.043 0.957 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.833 -5.070 -18.705 19.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.162 3.838 3 H 0.024 0.976 4 C -0.586 4.586 5 H 0.082 0.918 6 C -0.182 4.182 7 N -0.554 5.554 8 Si 0.807 3.193 9 H -0.195 1.195 10 H -0.197 1.197 11 H -0.188 1.188 12 O -0.266 6.266 13 C 0.284 3.716 14 O -0.432 6.432 15 C 0.121 3.879 16 C -0.109 4.109 17 C -0.133 4.133 18 C -0.140 4.140 19 C -0.127 4.127 20 C -0.146 4.146 21 C -0.121 4.121 22 C -0.182 4.182 23 C -0.175 4.175 24 C -0.050 4.050 25 O -0.278 6.278 26 H 0.062 0.938 27 H 0.103 0.897 28 H 0.038 0.962 29 H 0.082 0.918 30 H 0.155 0.845 31 H 0.174 0.826 32 H 0.175 0.825 33 H 0.163 0.837 34 H 0.132 0.868 35 H 0.136 0.864 36 H 0.099 0.901 37 H 0.124 0.876 38 H 0.124 0.876 39 H 0.062 0.938 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 2.619 -4.833 -18.449 19.251 hybrid contribution 0.178 0.333 1.403 1.453 sum 2.797 -4.501 -17.047 17.851 Atomic orbital electron populations 1.21957 0.96769 1.00206 1.00710 1.20393 0.92039 0.91986 0.79373 0.97645 1.21244 1.33559 1.13882 0.89940 0.91830 1.25850 0.94585 0.95665 1.02096 1.70012 1.36447 1.23619 1.25343 0.85166 0.78305 0.78846 0.76999 1.19477 1.19658 1.18846 1.86567 1.75235 1.43547 1.21249 1.24840 0.74207 0.85734 0.86812 1.90542 1.50224 1.17793 1.84645 1.20663 0.90771 0.89270 0.87148 1.19426 0.97093 0.95851 0.98545 1.21301 0.96596 1.00063 0.95379 1.21489 0.96238 0.96210 1.00045 1.21637 0.99699 0.94204 0.97136 1.21472 0.95219 1.01419 0.96443 1.21143 0.97067 0.94845 0.99036 1.23237 0.96545 0.97488 1.00965 1.23220 0.94930 1.00037 0.99269 1.24027 0.85032 0.98069 0.97886 1.88986 1.16424 1.31467 1.90922 0.93836 0.89703 0.96180 0.91840 0.84453 0.82562 0.82519 0.83677 0.86763 0.86372 0.90102 0.87562 0.87631 0.93827 0.85216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.63 9.33 71.98 0.67 -6.96 16 2 C 0.22 12.63 2.56 29.85 0.08 12.71 16 3 H 0.01 0.37 7.16 -2.38 -0.02 0.36 16 4 C -0.55 -32.77 8.90 25.60 0.23 -32.54 16 5 H 0.06 3.77 7.81 -2.91 -0.02 3.74 16 6 C 0.02 1.01 5.30 84.65 0.45 1.46 16 7 N -0.92 -53.92 11.32 21.45 0.24 -53.68 16 8 Si 0.98 44.03 29.54 68.60 2.03 46.06 16 9 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 10 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 11 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 12 O -0.35 -18.83 9.67 -46.86 -0.45 -19.29 16 13 C 0.44 20.69 6.75 71.24 0.48 21.17 16 14 O -0.54 -27.50 14.77 21.98 0.32 -27.18 16 15 C 0.16 5.78 0.95 -11.91 -0.01 5.77 16 16 C -0.11 -3.51 4.84 -19.86 -0.10 -3.61 16 17 C -0.12 -3.05 8.73 22.27 0.19 -2.86 16 18 C -0.12 -2.55 10.05 22.27 0.22 -2.33 16 19 C -0.11 -2.19 10.05 22.27 0.22 -1.97 16 20 C -0.13 -3.11 10.05 22.27 0.22 -2.89 16 21 C -0.10 -3.24 9.36 22.27 0.21 -3.03 16 22 C -0.15 -3.93 5.63 31.58 0.18 -3.75 16 23 C -0.14 -2.83 7.17 31.98 0.23 -2.60 16 24 C 0.03 0.69 7.67 72.75 0.56 1.25 16 25 O -0.36 -12.60 9.77 -137.40 -1.34 -13.94 16 26 H 0.04 2.27 8.14 -2.39 -0.02 2.25 16 27 H 0.08 4.90 6.07 -2.38 -0.01 4.89 16 28 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 30 H 0.14 3.22 6.45 -2.91 -0.02 3.20 16 31 H 0.16 2.19 8.06 -2.91 -0.02 2.17 16 32 H 0.16 2.02 8.06 -2.91 -0.02 2.00 16 33 H 0.15 2.79 8.06 -2.91 -0.02 2.77 16 34 H 0.11 3.93 7.56 -2.91 -0.02 3.91 16 35 H 0.12 2.54 5.77 -2.39 -0.01 2.53 16 36 H 0.08 2.49 6.72 -2.39 -0.02 2.47 16 37 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.13 2.61 8.14 -2.39 -0.02 2.59 16 Total: -1.00 -73.78 332.58 5.67 -68.11 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: 1.04 Total: 20.10 kcal Atomic # 6 Polarization: -24.01 SS G_CDS: 3.84 Total: -20.17 kcal Atomic # 7 Polarization: -53.92 SS G_CDS: 0.24 Total: -53.68 kcal Atomic # 8 Polarization: -58.94 SS G_CDS: -1.47 Total: -60.41 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -73.78 5.67 -68.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347052136.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.616 kcal (2) G-P(sol) polarization free energy of solvation -73.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds