Wall clock time and date at job start Tue Mar 31 2020 05:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30830 * 125.96263 * 2 1 4 4 C 1.33237 * 109.83270 * 180.02562 * 3 2 1 5 5 C 1.50702 * 125.53042 * 179.97438 * 4 3 2 6 6 C 1.50704 * 109.47115 * 89.99448 * 5 4 3 7 7 O 1.21297 * 119.99886 * 0.02562 * 6 5 4 8 8 N 1.34779 * 120.00092 * 180.02562 * 6 5 4 9 9 C 1.40151 * 120.00099 * 180.02562 * 8 6 5 10 10 C 1.40416 * 125.97476 * 0.02562 * 9 8 6 11 11 C 1.35237 * 107.86796 * 179.97438 * 10 9 8 12 12 N 1.34970 * 107.85941 * 0.26441 * 11 10 9 13 13 C 1.46504 * 125.96940 * 179.73198 * 12 11 10 14 14 C 1.50699 * 109.46610 * 125.00265 * 13 12 11 15 15 H 1.08001 * 120.00250 * 359.97438 * 14 13 12 16 16 C 1.37878 * 120.00163 * 179.97438 * 14 13 12 17 17 N 1.31523 * 119.99479 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00617 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.46913 * 59.99694 * 18 16 14 20 20 H 1.48497 * 109.47477 * 179.97438 * 18 16 14 21 21 H 1.48507 * 109.46927 * 300.00226 * 18 16 14 22 22 N 1.31213 * 125.97528 * 180.02562 * 9 8 6 23 23 N 1.30717 * 108.94570 * 0.25718 * 4 3 2 24 24 N 1.34434 * 125.96096 * 180.02562 * 2 1 3 25 25 H 0.96990 * 126.82291 * 359.97438 * 24 2 1 26 26 H 1.08995 * 109.46912 * 89.97793 * 1 2 3 27 27 H 1.09003 * 109.46956 * 209.97763 * 1 2 3 28 28 H 1.09003 * 109.46919 * 329.98027 * 1 2 3 29 29 H 1.08999 * 109.46960 * 329.99604 * 5 4 3 30 30 H 1.08996 * 109.47368 * 209.99708 * 5 4 3 31 31 H 0.96994 * 119.99525 * 0.02562 * 8 6 5 32 32 H 1.08000 * 126.06023 * 359.97438 * 10 9 8 33 33 H 1.08002 * 126.06518 * 179.97438 * 11 10 9 34 34 H 1.08998 * 109.46990 * 244.99353 * 13 12 11 35 35 H 1.08992 * 109.47218 * 5.00271 * 13 12 11 36 36 H 0.97001 * 119.99807 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0589 0.0000 4 6 3.5552 0.6888 -0.0006 5 6 4.7373 1.6236 -0.0013 6 6 5.1319 1.9356 1.4193 7 8 4.5143 1.4465 2.3416 8 7 6.1710 2.7580 1.6650 9 6 6.5383 3.0477 2.9861 10 6 5.9151 2.5527 4.1430 11 6 6.5628 3.0641 5.2143 12 7 7.5548 3.8577 4.7583 13 6 8.4996 4.6144 5.5836 14 6 9.9094 4.2518 5.1937 15 1 10.0841 3.5295 4.4099 16 6 10.9762 4.8419 5.8376 17 7 10.7634 5.7218 6.7917 18 14 12.7238 4.3919 5.3548 19 1 12.9421 4.7209 3.9233 20 1 13.6815 5.1599 6.1904 21 1 12.9368 2.9376 5.5666 22 7 7.5247 3.8289 3.3583 23 7 3.6195 -0.6168 -0.0065 24 7 2.2964 -1.0881 -0.0005 25 1 2.0094 -2.0146 -0.0006 26 1 -0.3633 0.0004 -1.0276 27 1 -0.3633 -0.8902 0.5135 28 1 -0.3633 0.8898 0.5142 29 1 4.4699 2.5469 -0.5152 30 1 5.5741 1.1509 -0.5154 31 1 6.6645 3.1494 0.9274 32 1 5.0687 1.8825 4.1719 33 1 6.3252 2.8751 6.2508 34 1 8.3431 5.6820 5.4289 35 1 8.3394 4.3721 6.6341 36 1 11.5140 6.1373 7.2444 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347513813.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:57 Heat of formation + Delta-G solvation = 131.109144 kcal Electronic energy + Delta-G solvation = -21509.586829 eV Core-core repulsion = 18032.754162 eV Total energy + Delta-G solvation = -3476.832666 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.123 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.38689 -40.62594 -39.17479 -34.75405 -33.92226 -33.32561 -32.61121 -31.19800 -30.00318 -29.27149 -28.02110 -26.55589 -23.38023 -22.31263 -21.50648 -20.74969 -19.98981 -19.50164 -18.13636 -17.07548 -16.61970 -16.52130 -15.72742 -15.54155 -15.26618 -14.62262 -14.35806 -14.00516 -13.84194 -13.79034 -13.20919 -13.10641 -12.74049 -12.53242 -12.28237 -12.17654 -12.05944 -11.71898 -11.04432 -10.84654 -10.43012 -10.37474 -10.25074 -10.23629 -9.99332 -9.76074 -9.51698 -9.47647 -8.61342 -8.10445 -7.44414 -6.22658 -4.27732 1.33646 2.32805 2.35149 2.47157 2.94263 3.00057 3.27039 3.30138 3.34871 3.65430 3.74907 3.94897 4.24353 4.33773 4.46881 4.76640 4.89554 4.98815 5.11366 5.12389 5.34245 5.40024 5.57643 5.83329 5.98563 6.14287 6.29350 6.52234 6.63873 6.78501 6.88175 7.07371 7.42720 7.59360 7.72724 7.85770 7.90725 8.06819 8.26722 8.65733 8.81790 9.37731 10.86044 Molecular weight = 290.12amu Principal moments of inertia in cm(-1) A = 0.040427 B = 0.002671 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.433898 B =10481.482090 C =10818.929532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.283 3.717 3 N -0.529 5.529 4 C 0.252 3.748 5 C -0.044 4.044 6 C 0.527 3.473 7 O -0.508 6.508 8 N -0.629 5.629 9 C 0.258 3.742 10 C -0.287 4.287 11 C 0.051 3.949 12 N -0.319 5.319 13 C 0.259 3.741 14 C -0.529 4.529 15 H 0.068 0.932 16 C 0.062 3.938 17 N -0.896 5.896 18 Si 0.908 3.092 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.275 1.275 22 N -0.303 5.303 23 N -0.302 5.302 24 N -0.482 5.482 25 H 0.440 0.560 26 H 0.091 0.909 27 H 0.083 0.917 28 H 0.099 0.901 29 H 0.127 0.873 30 H 0.122 0.878 31 H 0.412 0.588 32 H 0.158 0.842 33 H 0.167 0.833 34 H 0.045 0.955 35 H 0.057 0.943 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.728 -10.950 -14.441 26.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.005 3.995 3 N -0.258 5.258 4 C -0.031 4.031 5 C -0.087 4.087 6 C 0.311 3.689 7 O -0.381 6.381 8 N -0.277 5.277 9 C 0.005 3.995 10 C -0.318 4.318 11 C -0.099 4.099 12 N -0.101 5.101 13 C 0.141 3.859 14 C -0.567 4.567 15 H 0.087 0.913 16 C -0.141 4.141 17 N -0.534 5.534 18 Si 0.736 3.264 19 H -0.199 1.199 20 H -0.211 1.211 21 H -0.201 1.201 22 N -0.134 5.134 23 N -0.131 5.131 24 N -0.200 5.200 25 H 0.285 0.715 26 H 0.110 0.890 27 H 0.101 0.899 28 H 0.118 0.882 29 H 0.145 0.855 30 H 0.140 0.860 31 H 0.248 0.752 32 H 0.176 0.824 33 H 0.185 0.815 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -17.475 -10.377 -13.965 24.659 hybrid contribution 0.320 -1.127 -0.155 1.181 sum -17.155 -11.504 -14.119 25.019 Atomic orbital electron populations 1.20395 0.83609 1.05178 1.04442 1.24366 0.96616 0.82742 0.95821 1.70297 1.01214 1.29549 1.24777 1.23164 0.92552 0.89680 0.97752 1.19822 0.94081 0.99299 0.95481 1.20120 0.79503 0.78444 0.90835 1.90676 1.51880 1.50080 1.45437 1.42342 1.32427 1.47537 1.05411 1.19073 0.96201 0.99295 0.84913 1.21508 1.08430 1.12660 0.89193 1.22551 0.91691 0.95727 0.99927 1.49085 1.23996 1.34521 1.02505 1.19741 0.86465 0.91361 0.88323 1.21221 0.89289 1.25594 1.20599 0.91345 1.24949 0.99836 0.94633 0.94680 1.69914 1.32289 1.27555 1.23633 0.86378 0.82795 0.78584 0.78687 1.19916 1.21057 1.20055 1.77326 1.19909 1.23746 0.92448 1.77997 0.96703 1.12171 1.26182 1.47930 1.04232 1.10026 1.57833 0.71499 0.89013 0.89860 0.88225 0.85513 0.85968 0.75223 0.82449 0.81526 0.93682 0.92558 0.92280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.33 10.51 36.01 0.38 0.04 16 2 C 0.28 2.68 8.24 -155.69 -1.28 1.39 16 3 N -0.53 -6.79 11.19 -8.16 -0.09 -6.88 16 4 C 0.25 3.29 6.63 -156.85 -1.04 2.25 16 5 C -0.04 -0.47 6.33 -29.03 -0.18 -0.65 16 6 C 0.53 7.86 7.79 -10.98 -0.09 7.78 16 7 O -0.51 -9.53 13.17 5.54 0.07 -9.46 16 8 N -0.63 -9.73 5.45 -11.13 -0.06 -9.80 16 9 C 0.26 5.28 8.11 -154.40 -1.25 4.03 16 10 C -0.29 -5.88 9.61 -39.83 -0.38 -6.27 16 11 C 0.05 1.05 11.44 -17.24 -0.20 0.85 16 12 N -0.32 -7.55 3.67 -62.56 -0.23 -7.78 16 13 C 0.26 6.64 6.26 -5.19 -0.03 6.61 16 14 C -0.53 -14.82 9.23 -34.44 -0.32 -15.14 16 15 H 0.07 1.98 7.81 -52.49 -0.41 1.57 16 16 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 17 N -0.90 -25.49 13.29 55.43 0.74 -24.75 16 18 Si 0.91 21.49 29.54 -169.99 -5.02 16.47 16 19 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 N -0.30 -7.06 12.42 31.44 0.39 -6.67 16 23 N -0.30 -3.93 12.80 32.42 0.41 -3.51 16 24 N -0.48 -4.48 7.45 32.62 0.24 -4.24 16 25 H 0.44 2.33 8.96 -182.34 -1.63 0.70 16 26 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 27 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 28 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.13 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.12 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.41 4.93 8.82 -40.82 -0.36 4.57 16 32 H 0.16 3.20 5.91 -52.49 -0.31 2.89 16 33 H 0.17 2.81 8.06 -52.49 -0.42 2.39 16 34 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 35 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 36 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 324.68 15.07 4.89 4.89 Total: -1.00 -37.64 324.68 -8.37 -46.01 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -5.23 Total: 3.20 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: -4.49 Total: 2.51 kcal Atomic # 7 Polarization: -65.03 SS G_CDS: 1.40 Total: -63.63 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: 0.07 Total: -9.46 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -37.64 -8.37 -46.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347513813.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.123 kcal (2) G-P(sol) polarization free energy of solvation -37.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds