Wall clock time and date at job start Tue Mar 31 2020 05:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30830 * 125.96263 * 2 1 4 4 C 1.33237 * 109.83270 * 180.02562 * 3 2 1 5 5 C 1.50702 * 125.53042 * 179.97438 * 4 3 2 6 6 C 1.50704 * 109.47115 * 89.99448 * 5 4 3 7 7 O 1.21297 * 119.99886 * 0.02562 * 6 5 4 8 8 N 1.34779 * 120.00092 * 180.02562 * 6 5 4 9 9 C 1.40151 * 120.00099 * 180.02562 * 8 6 5 10 10 C 1.40416 * 125.97476 * 0.02562 * 9 8 6 11 11 C 1.35237 * 107.86796 * 179.97438 * 10 9 8 12 12 N 1.34970 * 107.85941 * 0.26441 * 11 10 9 13 13 C 1.46504 * 125.96940 * 179.73198 * 12 11 10 14 14 C 1.50699 * 109.46610 * 125.00265 * 13 12 11 15 15 H 1.08001 * 120.00250 * 359.97438 * 14 13 12 16 16 C 1.37878 * 120.00163 * 179.97438 * 14 13 12 17 17 N 1.31523 * 119.99479 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00617 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.46913 * 59.99694 * 18 16 14 20 20 H 1.48497 * 109.47477 * 179.97438 * 18 16 14 21 21 H 1.48507 * 109.46927 * 300.00226 * 18 16 14 22 22 N 1.31213 * 125.97528 * 180.02562 * 9 8 6 23 23 N 1.30717 * 108.94570 * 0.25718 * 4 3 2 24 24 N 1.34434 * 125.96096 * 180.02562 * 2 1 3 25 25 H 0.96990 * 126.82291 * 359.97438 * 24 2 1 26 26 H 1.08995 * 109.46912 * 89.97793 * 1 2 3 27 27 H 1.09003 * 109.46956 * 209.97763 * 1 2 3 28 28 H 1.09003 * 109.46919 * 329.98027 * 1 2 3 29 29 H 1.08999 * 109.46960 * 329.99604 * 5 4 3 30 30 H 1.08996 * 109.47368 * 209.99708 * 5 4 3 31 31 H 0.96994 * 119.99525 * 0.02562 * 8 6 5 32 32 H 1.08000 * 126.06023 * 359.97438 * 10 9 8 33 33 H 1.08002 * 126.06518 * 179.97438 * 11 10 9 34 34 H 1.08998 * 109.46990 * 244.99353 * 13 12 11 35 35 H 1.08992 * 109.47218 * 5.00271 * 13 12 11 36 36 H 0.97001 * 119.99807 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0589 0.0000 4 6 3.5552 0.6888 -0.0006 5 6 4.7373 1.6236 -0.0013 6 6 5.1319 1.9356 1.4193 7 8 4.5143 1.4465 2.3416 8 7 6.1710 2.7580 1.6650 9 6 6.5383 3.0477 2.9861 10 6 5.9151 2.5527 4.1430 11 6 6.5628 3.0641 5.2143 12 7 7.5548 3.8577 4.7583 13 6 8.4996 4.6144 5.5836 14 6 9.9094 4.2518 5.1937 15 1 10.0841 3.5295 4.4099 16 6 10.9762 4.8419 5.8376 17 7 10.7634 5.7218 6.7917 18 14 12.7238 4.3919 5.3548 19 1 12.9421 4.7209 3.9233 20 1 13.6815 5.1599 6.1904 21 1 12.9368 2.9376 5.5666 22 7 7.5247 3.8289 3.3583 23 7 3.6195 -0.6168 -0.0065 24 7 2.2964 -1.0881 -0.0005 25 1 2.0094 -2.0146 -0.0006 26 1 -0.3633 0.0004 -1.0276 27 1 -0.3633 -0.8902 0.5135 28 1 -0.3633 0.8898 0.5142 29 1 4.4699 2.5469 -0.5152 30 1 5.5741 1.1509 -0.5154 31 1 6.6645 3.1494 0.9274 32 1 5.0687 1.8825 4.1719 33 1 6.3252 2.8751 6.2508 34 1 8.3431 5.6820 5.4289 35 1 8.3394 4.3721 6.6341 36 1 11.5140 6.1373 7.2444 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347513813.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:57 Heat of formation + Delta-G solvation = 103.784264 kcal Electronic energy + Delta-G solvation = -21510.771724 eV Core-core repulsion = 18032.754162 eV Total energy + Delta-G solvation = -3478.017562 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.123 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.18058 -42.19928 -40.53164 -36.26239 -35.27661 -34.71746 -33.35014 -32.88863 -31.10328 -30.82070 -28.81283 -28.33502 -25.15253 -23.63519 -22.46911 -22.01669 -21.33240 -20.83879 -18.91437 -18.68086 -18.32584 -18.01729 -17.07838 -16.67607 -16.56467 -16.12861 -15.75419 -15.29935 -15.09641 -14.58772 -14.45885 -14.25620 -13.83341 -13.74795 -13.62765 -13.59318 -13.19180 -12.92662 -12.73515 -12.71274 -12.28051 -12.07533 -11.63880 -11.40588 -11.23196 -11.09995 -10.90768 -10.71576 -10.47411 -9.76642 -9.13281 -8.32673 -6.46832 0.54676 0.93333 1.28316 1.38424 1.40857 1.44194 1.50420 1.73614 1.83355 2.21929 2.32693 2.47587 2.98683 2.99400 3.51100 3.65865 3.89498 4.02965 4.26490 4.38844 4.41400 4.72997 4.74781 4.78000 4.88796 4.92045 5.02667 5.07493 5.14852 5.24239 5.34568 5.56779 5.79930 5.91503 6.21647 6.23581 6.29447 6.64565 6.97782 7.06711 7.12515 7.22977 8.74888 Molecular weight = 290.12amu Principal moments of inertia in cm(-1) A = 0.040427 B = 0.002671 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.433898 B =10481.482090 C =10818.929532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.286 3.714 3 N -0.567 5.567 4 C 0.234 3.766 5 C -0.035 4.035 6 C 0.529 3.471 7 O -0.547 6.547 8 N -0.620 5.620 9 C 0.267 3.733 10 C -0.295 4.295 11 C 0.056 3.944 12 N -0.344 5.344 13 C 0.273 3.727 14 C -0.548 4.548 15 H 0.053 0.947 16 C 0.018 3.982 17 N -0.921 5.921 18 Si 0.972 3.028 19 H -0.272 1.272 20 H -0.273 1.273 21 H -0.270 1.270 22 N -0.341 5.341 23 N -0.335 5.335 24 N -0.474 5.474 25 H 0.455 0.545 26 H 0.115 0.885 27 H 0.110 0.890 28 H 0.096 0.904 29 H 0.157 0.843 30 H 0.153 0.847 31 H 0.429 0.571 32 H 0.162 0.838 33 H 0.200 0.800 34 H 0.023 0.977 35 H 0.058 0.942 36 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.412 -12.036 -15.707 27.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.008 3.992 3 N -0.297 5.297 4 C -0.049 4.049 5 C -0.077 4.077 6 C 0.316 3.684 7 O -0.422 6.422 8 N -0.270 5.270 9 C 0.012 3.988 10 C -0.326 4.326 11 C -0.093 4.093 12 N -0.126 5.126 13 C 0.154 3.846 14 C -0.586 4.586 15 H 0.071 0.929 16 C -0.183 4.183 17 N -0.559 5.559 18 Si 0.796 3.204 19 H -0.197 1.197 20 H -0.198 1.198 21 H -0.195 1.195 22 N -0.172 5.172 23 N -0.165 5.165 24 N -0.194 5.194 25 H 0.304 0.696 26 H 0.133 0.867 27 H 0.128 0.872 28 H 0.115 0.885 29 H 0.175 0.825 30 H 0.170 0.830 31 H 0.268 0.732 32 H 0.179 0.821 33 H 0.217 0.783 34 H 0.041 0.959 35 H 0.076 0.924 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -18.184 -11.488 -15.265 26.375 hybrid contribution 0.350 -0.873 0.194 0.960 sum -17.833 -12.361 -15.072 26.420 Atomic orbital electron populations 1.20646 0.80113 1.06333 1.06240 1.25239 0.98302 0.81988 0.93636 1.70300 1.01582 1.31297 1.26507 1.23544 0.93335 0.90026 0.98007 1.19941 0.94606 1.00711 0.92404 1.20943 0.78213 0.76941 0.92313 1.90649 1.53025 1.51408 1.47167 1.42466 1.32827 1.47667 1.04039 1.19431 0.94805 0.97537 0.87023 1.21665 1.08624 1.12905 0.89440 1.23133 0.90262 0.94192 1.01664 1.48860 1.24952 1.35970 1.02813 1.19345 0.86213 0.90393 0.88662 1.21369 0.90884 1.25769 1.20610 0.92898 1.25755 1.03711 0.94327 0.94458 1.69994 1.33651 1.28066 1.24218 0.85394 0.78026 0.78542 0.78437 1.19719 1.19790 1.19539 1.77251 1.21769 1.25723 0.92502 1.77881 0.98874 1.12499 1.27228 1.47875 1.03229 1.11037 1.57299 0.69630 0.86720 0.87166 0.88533 0.82507 0.82960 0.73218 0.82110 0.78323 0.95947 0.92438 0.91821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.45 10.51 71.24 0.75 0.29 16 2 C 0.29 4.95 8.24 138.23 1.14 6.08 16 3 N -0.57 -13.89 11.19 -179.72 -2.01 -15.90 16 4 C 0.23 5.85 6.63 138.63 0.92 6.77 16 5 C -0.03 -0.67 6.33 29.10 0.18 -0.49 16 6 C 0.53 15.22 7.79 87.66 0.68 15.90 16 7 O -0.55 -20.34 13.17 -3.08 -0.04 -20.38 16 8 N -0.62 -18.58 5.45 -307.50 -1.68 -20.26 16 9 C 0.27 10.86 8.11 133.33 1.08 11.94 16 10 C -0.30 -12.07 9.61 22.11 0.21 -11.85 16 11 C 0.06 2.30 11.44 83.52 0.96 3.25 16 12 N -0.34 -16.52 3.67 -351.85 -1.29 -17.81 16 13 C 0.27 14.35 6.26 85.63 0.54 14.89 16 14 C -0.55 -31.23 9.23 25.60 0.24 -31.00 16 15 H 0.05 3.12 7.81 -2.91 -0.02 3.10 16 16 C 0.02 1.00 5.46 84.65 0.46 1.46 16 17 N -0.92 -52.56 13.29 21.45 0.28 -52.28 16 18 Si 0.97 43.86 29.54 68.60 2.03 45.88 16 19 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 20 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 21 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 22 N -0.34 -16.10 12.42 -54.45 -0.68 -16.77 16 23 N -0.33 -8.40 12.80 -51.33 -0.66 -9.05 16 24 N -0.47 -8.15 7.45 -50.70 -0.38 -8.53 16 25 H 0.46 4.09 8.96 -213.11 -1.91 2.18 16 26 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16 27 H 0.11 0.09 8.14 -2.39 -0.02 0.07 16 28 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.16 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.15 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.43 9.68 8.82 -92.71 -0.82 8.86 16 32 H 0.16 6.52 5.91 -2.91 -0.02 6.50 16 33 H 0.20 6.49 8.06 -2.91 -0.02 6.47 16 34 H 0.02 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.06 2.96 8.07 -2.39 -0.02 2.94 16 36 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 Total: -1.00 -82.59 324.68 1.16 -81.43 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: -1.58 Total: 16.42 kcal Atomic # 6 Polarization: 10.09 SS G_CDS: 7.16 Total: 17.25 kcal Atomic # 7 Polarization: -134.20 SS G_CDS: -6.40 Total: -140.60 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: -0.04 Total: -20.38 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.88 kcal Total: -82.59 1.16 -81.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347513813.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.214 kcal (2) G-P(sol) polarization free energy of solvation -82.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds