Wall clock time and date at job start Tue Mar 31 2020 06:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 110.73699 * 2 1 4 4 C 1.54984 * 110.83173 * 236.57260 * 2 1 3 5 5 C 1.54278 * 103.75132 * 204.70264 * 4 2 1 6 6 C 1.51449 * 106.84995 * 23.12391 * 5 4 2 7 7 C 1.33084 * 126.34076 * 180.33875 * 6 5 4 8 8 C 1.46945 * 119.99963 * 0.02562 * 7 6 5 9 9 O 1.21534 * 120.00056 * 0.02562 * 8 7 6 10 10 O 1.34802 * 119.99751 * 180.02562 * 8 7 6 11 11 C 1.45205 * 116.99911 * 180.02562 * 10 8 7 12 12 H 1.08997 * 109.46437 * 329.99340 * 11 10 8 13 13 C 1.50695 * 109.47199 * 89.99625 * 11 10 8 14 14 H 1.07998 * 119.99839 * 34.19316 * 13 11 10 15 15 C 1.37878 * 120.00097 * 214.18226 * 13 11 10 16 16 N 1.31507 * 120.00085 * 186.99089 * 15 13 11 17 17 Si 1.86800 * 119.99630 * 7.26688 * 15 13 11 18 18 H 1.48500 * 109.47099 * 274.97999 * 17 15 13 19 19 H 1.48494 * 109.47223 * 34.98251 * 17 15 13 20 20 H 1.48500 * 109.47005 * 154.98269 * 17 15 13 21 21 C 1.50702 * 109.46731 * 209.99934 * 11 10 8 22 22 C 1.34513 * 125.78591 * 143.05677 * 21 11 10 23 23 C 1.41385 * 106.83846 * 179.88777 * 22 21 11 24 24 C 1.34517 * 106.84144 * 0.37497 * 23 22 21 25 25 O 1.34298 * 125.78980 * 323.36998 * 21 11 10 26 26 C 1.51846 * 107.31748 * 0.59701 * 6 5 4 27 27 H 1.09006 * 109.47353 * 183.43035 * 1 2 3 28 28 H 1.09003 * 109.47160 * 303.42710 * 1 2 3 29 29 H 1.09000 * 109.47733 * 63.43005 * 1 2 3 30 30 H 1.09001 * 110.57332 * 86.13711 * 4 2 1 31 31 H 1.09006 * 110.56921 * 323.26993 * 4 2 1 32 32 H 1.09002 * 109.98496 * 263.77480 * 5 4 2 33 33 H 1.08996 * 110.01695 * 142.48990 * 5 4 2 34 34 H 1.08007 * 119.99623 * 180.02562 * 7 6 5 35 35 H 0.97008 * 119.99850 * 180.02562 * 16 15 13 36 36 H 1.08003 * 126.58253 * 0.03538 * 22 21 11 37 37 H 1.08001 * 126.57986 * 180.12708 * 23 22 21 38 38 H 1.07995 * 125.79003 * 179.74870 * 24 23 22 39 39 H 1.09002 * 110.44245 * 94.70319 * 26 6 5 40 40 H 1.08995 * 110.44395 * 217.23326 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9159 1.0194 0.0000 4 6 2.0811 -0.7980 -1.2089 5 6 3.4840 -1.2427 -0.7459 6 6 3.4694 -1.2350 0.7685 7 6 4.4853 -1.5495 1.5685 8 6 5.7762 -1.9519 0.9933 9 8 5.9163 -1.9971 -0.2131 10 8 6.8051 -2.2709 1.8037 11 6 8.0507 -2.6587 1.1662 12 1 7.8364 -3.1312 0.2076 13 6 8.9034 -1.4361 0.9443 14 1 8.8802 -0.6251 1.6570 15 6 9.7131 -1.3531 -0.1686 16 7 10.5579 -0.3531 -0.2940 17 14 9.6047 -2.6570 -1.5018 18 1 10.4660 -3.8105 -1.1373 19 1 8.1977 -3.1126 -1.6354 20 1 10.0643 -2.0845 -2.7926 21 6 8.7869 -3.6307 2.0519 22 6 9.5079 -4.6861 1.6328 23 6 10.0217 -5.3164 2.7894 24 6 9.5770 -4.6133 3.8464 25 8 8.8296 -3.5934 3.3937 26 6 2.0791 -0.8082 1.2049 27 1 -0.3634 -1.0259 0.0615 28 1 -0.3634 0.5661 0.8577 29 1 -0.3634 0.4596 -0.9191 30 1 2.1531 -0.1589 -2.0890 31 1 1.4529 -1.6648 -1.4142 32 1 4.2364 -0.5457 -1.1148 33 1 3.6963 -2.2475 -1.1112 34 1 4.3609 -1.5089 2.6407 35 1 11.1274 -0.2945 -1.0771 36 1 9.6662 -4.9918 0.6091 37 1 10.6474 -6.1962 2.8187 38 1 9.7854 -4.8321 4.8833 39 1 1.4554 -1.6813 1.3967 40 1 2.1354 -0.1772 2.0919 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347949044.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:37 Heat of formation + Delta-G solvation = -69.460937 kcal Electronic energy + Delta-G solvation = -22849.478074 eV Core-core repulsion = 19402.902878 eV Total energy + Delta-G solvation = -3446.575196 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.74868 -39.58929 -38.31415 -35.66417 -33.12056 -32.63498 -32.19402 -30.52709 -29.78241 -27.50423 -26.79990 -24.33112 -22.95120 -21.22909 -20.82774 -20.18001 -19.56519 -18.20427 -17.46047 -16.87194 -16.71253 -15.90429 -15.23108 -14.99175 -14.88265 -14.59593 -14.17727 -13.68181 -13.50219 -13.32925 -12.83314 -12.79114 -12.30805 -12.23406 -12.07481 -11.92401 -11.73665 -11.69257 -11.29918 -11.15785 -10.96608 -10.88260 -10.77570 -10.61686 -10.16214 -9.92848 -9.50494 -9.33574 -9.16549 -8.96500 -8.81571 -7.65539 -6.35544 -4.42237 1.55698 2.50281 3.17789 3.25976 3.27553 3.34636 3.58120 3.67979 3.82326 4.22958 4.43003 4.56460 4.77801 4.99017 5.07223 5.23159 5.34199 5.40123 5.42849 5.52546 5.54547 5.63004 5.67331 5.70172 5.75006 5.90103 5.97351 6.04345 6.10834 6.23814 6.25134 6.34523 6.50990 6.53764 6.57301 6.68579 6.83229 7.13123 7.24178 7.44053 7.93468 8.16932 8.62478 8.76992 9.22891 10.74849 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.017770 B = 0.004506 C = 0.003902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.348158 B = 6212.167912 C = 7173.743107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.098 4.098 3 H 0.081 0.919 4 C -0.123 4.123 5 C -0.098 4.098 6 C -0.039 4.039 7 C -0.184 4.184 8 C 0.494 3.506 9 O -0.510 6.510 10 O -0.353 6.353 11 C 0.253 3.747 12 H 0.085 0.915 13 C -0.531 4.531 14 H 0.088 0.912 15 C 0.094 3.906 16 N -0.870 5.870 17 Si 0.857 3.143 18 H -0.265 1.265 19 H -0.246 1.246 20 H -0.279 1.279 21 C 0.050 3.950 22 C -0.246 4.246 23 C -0.208 4.208 24 C -0.073 4.073 25 O -0.164 6.164 26 C -0.093 4.093 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.137 0.863 35 H 0.272 0.728 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.193 0.807 39 H 0.087 0.913 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.384 -3.952 2.473 16.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.117 4.117 3 H 0.099 0.901 4 C -0.161 4.161 5 C -0.135 4.135 6 C -0.040 4.040 7 C -0.202 4.202 8 C 0.340 3.660 9 O -0.401 6.401 10 O -0.270 6.270 11 C 0.200 3.800 12 H 0.102 0.898 13 C -0.567 4.567 14 H 0.106 0.894 15 C -0.114 4.114 16 N -0.505 5.505 17 Si 0.683 3.317 18 H -0.190 1.190 19 H -0.171 1.171 20 H -0.204 1.204 21 C -0.002 4.002 22 C -0.266 4.266 23 C -0.227 4.227 24 C -0.140 4.140 25 O -0.059 6.059 26 C -0.129 4.129 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.109 0.891 33 H 0.104 0.896 34 H 0.155 0.845 35 H 0.082 0.918 36 H 0.155 0.845 37 H 0.157 0.843 38 H 0.210 0.790 39 H 0.106 0.894 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -15.288 -3.658 2.177 15.870 hybrid contribution 0.670 -0.759 -0.760 1.266 sum -14.619 -4.418 1.417 15.337 Atomic orbital electron populations 1.21759 0.94723 1.01833 1.01697 1.22184 0.95421 0.99394 0.94683 0.90100 1.22539 0.96231 0.99653 0.97672 1.21362 0.96958 1.03528 0.91608 1.22888 0.93975 0.90791 0.96316 1.21343 0.90518 1.08020 1.00368 1.21085 0.84744 0.74867 0.85309 1.90788 1.83910 1.49490 1.15899 1.86537 1.21715 1.77162 1.41598 1.19386 0.78586 0.93072 0.89002 0.89794 1.21015 1.24158 1.01786 1.09718 0.89357 1.24917 0.93635 0.95500 0.97299 1.69869 1.21055 1.30461 1.29091 0.87099 0.80304 0.82391 0.81946 1.19013 1.17063 1.20417 1.23353 1.00986 0.95498 0.80316 1.21326 1.06843 0.98647 0.99741 1.21613 1.05755 1.03044 0.92325 1.23809 1.00325 0.90525 0.99368 1.84097 1.56250 1.43552 1.22008 1.21672 0.92541 1.00122 0.98612 0.92578 0.92636 0.92532 0.91289 0.91455 0.89132 0.89594 0.84536 0.91782 0.84463 0.84274 0.79022 0.89435 0.90342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 9.29 37.16 0.35 -0.71 16 2 C -0.10 -0.92 3.54 -88.45 -0.31 -1.24 16 3 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 4 C -0.12 -1.30 6.32 -25.01 -0.16 -1.46 16 5 C -0.10 -1.39 4.82 -26.85 -0.13 -1.52 16 6 C -0.04 -0.55 6.15 -100.21 -0.62 -1.16 16 7 C -0.18 -3.02 10.06 -37.85 -0.38 -3.40 16 8 C 0.49 10.76 7.87 34.26 0.27 11.03 16 9 O -0.51 -12.16 13.37 -19.29 -0.26 -12.42 16 10 O -0.35 -8.52 9.85 -43.35 -0.43 -8.94 16 11 C 0.25 6.54 2.10 -29.04 -0.06 6.48 16 12 H 0.08 2.20 4.03 -51.93 -0.21 1.99 16 13 C -0.53 -15.51 9.19 -34.44 -0.32 -15.82 16 14 H 0.09 2.81 8.06 -52.49 -0.42 2.39 16 15 C 0.09 2.72 5.47 -17.82 -0.10 2.63 16 16 N -0.87 -26.30 13.96 55.43 0.77 -25.52 16 17 Si 0.86 21.44 26.45 -169.99 -4.50 16.95 16 18 H -0.26 -6.29 6.66 56.52 0.38 -5.91 16 19 H -0.25 -6.14 6.36 56.52 0.36 -5.78 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 21 C 0.05 1.22 6.20 -35.62 -0.22 0.99 16 22 C -0.25 -5.40 10.50 -39.70 -0.42 -5.82 16 23 C -0.21 -3.85 10.91 -39.70 -0.43 -4.28 16 24 C -0.07 -1.31 12.09 29.42 0.36 -0.96 16 25 O -0.16 -3.69 10.64 2.88 0.03 -3.66 16 26 C -0.09 -0.94 6.10 -26.19 -0.16 -1.10 16 27 H 0.06 0.39 8.08 -51.93 -0.42 -0.03 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.64 8.04 -51.93 -0.42 0.22 16 32 H 0.09 1.48 7.66 -51.93 -0.40 1.09 16 33 H 0.09 1.32 7.69 -51.93 -0.40 0.92 16 34 H 0.14 1.91 8.06 -52.48 -0.42 1.49 16 35 H 0.27 7.62 8.31 -40.82 -0.34 7.29 16 36 H 0.14 2.91 7.00 -52.48 -0.37 2.54 16 37 H 0.14 2.07 8.06 -52.49 -0.42 1.65 16 38 H 0.19 2.48 8.06 -52.49 -0.42 2.06 16 39 H 0.09 0.78 8.01 -51.93 -0.42 0.36 16 40 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 336.79 15.07 5.08 5.08 Total: -1.00 -32.91 336.79 -7.27 -40.18 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -5.63 Total: 4.69 kcal Atomic # 6 Polarization: -14.00 SS G_CDS: -2.33 Total: -16.34 kcal Atomic # 7 Polarization: -26.30 SS G_CDS: 0.77 Total: -25.52 kcal Atomic # 8 Polarization: -24.37 SS G_CDS: -0.65 Total: -25.03 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.50 Total: 16.95 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.91 -7.27 -40.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347949044.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.284 kcal (2) G-P(sol) polarization free energy of solvation -32.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds