Wall clock time and date at job start Tue Mar 31 2020 06:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 110.62340 * 2 1 4 4 C 1.54982 * 110.57098 * 237.16212 * 2 1 3 5 5 C 1.55131 * 102.22552 * 204.16767 * 4 2 1 6 6 C 1.51849 * 104.31627 * 37.93684 * 5 4 2 7 7 C 1.33078 * 126.33902 * 156.13496 * 6 5 4 8 8 C 1.46954 * 119.99946 * 179.68807 * 7 6 5 9 9 O 1.21544 * 119.99773 * 359.97438 * 8 7 6 10 10 O 1.34794 * 120.00082 * 180.02562 * 8 7 6 11 11 C 1.45207 * 116.99858 * 179.97438 * 10 8 7 12 12 H 1.09003 * 109.47032 * 329.99585 * 11 10 8 13 13 C 1.50694 * 109.47243 * 89.99829 * 11 10 8 14 14 H 1.08006 * 119.99993 * 239.99909 * 13 11 10 15 15 C 1.37879 * 120.00087 * 59.99798 * 13 11 10 16 16 N 1.31512 * 120.00057 * 0.02562 * 15 13 11 17 17 Si 1.86797 * 119.99912 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.47360 * 60.00079 * 17 15 13 19 19 H 1.48501 * 109.47137 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47478 * 300.00001 * 17 15 13 21 21 C 1.50700 * 109.46696 * 209.99899 * 11 10 8 22 22 C 1.34520 * 125.78639 * 145.00440 * 21 11 10 23 23 C 1.41381 * 106.83580 * 180.22245 * 22 21 11 24 24 C 1.34513 * 106.84363 * 359.57150 * 23 22 21 25 25 O 1.34302 * 125.79150 * 324.95481 * 21 11 10 26 26 C 1.51448 * 107.31258 * 335.86889 * 6 5 4 27 27 H 1.08997 * 109.47200 * 298.62031 * 1 2 3 28 28 H 1.08996 * 109.46817 * 58.62227 * 1 2 3 29 29 H 1.09002 * 109.46993 * 178.62022 * 1 2 3 30 30 H 1.09005 * 110.83526 * 322.56235 * 4 2 1 31 31 H 1.08995 * 110.83114 * 85.93949 * 4 2 1 32 32 H 1.08994 * 110.58190 * 279.19551 * 5 4 2 33 33 H 1.08996 * 110.41222 * 156.59051 * 5 4 2 34 34 H 1.08002 * 120.00403 * 359.68112 * 7 6 5 35 35 H 0.96994 * 120.00038 * 179.97438 * 16 15 13 36 36 H 1.08002 * 126.57789 * 359.95308 * 22 21 11 37 37 H 1.08009 * 126.57222 * 179.73218 * 23 22 21 38 38 H 1.07998 * 125.78715 * 180.12081 * 24 23 22 39 39 H 1.09006 * 109.98119 * 119.95585 * 26 6 5 40 40 H 1.09006 * 109.98211 * 241.24880 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9139 1.0202 0.0000 4 6 2.0746 -0.7868 -1.2191 5 6 3.4850 -1.2116 -0.7326 6 6 3.2911 -1.5444 0.7362 7 6 4.0545 -2.3510 1.4695 8 6 3.7412 -2.5698 2.8885 9 8 2.7851 -2.0137 3.3924 10 8 4.5146 -3.3864 3.6313 11 6 4.1461 -3.5552 5.0256 12 1 3.6642 -2.6466 5.3866 13 6 3.1931 -4.7152 5.1565 14 1 2.2039 -4.5585 5.5606 15 6 3.5840 -5.9767 4.7602 16 7 4.7888 -6.1676 4.2685 17 14 2.4025 -7.4144 4.9217 18 1 1.1841 -7.1468 4.1160 19 1 3.0593 -8.6524 4.4306 20 1 2.0250 -7.5872 6.3475 21 6 5.3829 -3.8265 5.8428 22 6 5.6014 -3.4070 7.1021 23 6 6.8808 -3.8794 7.4749 24 6 7.3635 -4.5673 6.4246 25 8 6.4535 -4.5289 5.4376 26 6 2.0720 -0.7832 1.2137 27 1 -0.3633 0.4922 0.9021 28 1 -0.3633 0.5351 -0.8774 29 1 -0.3633 -1.0274 -0.0247 30 1 1.4534 -1.6581 -1.4271 31 1 2.1432 -0.1436 -2.0964 32 1 4.1930 -0.3908 -0.8467 33 1 3.8274 -2.0898 -1.2799 34 1 4.9042 -2.8449 1.0217 35 1 5.0639 -7.0551 3.9901 36 1 4.9303 -2.8182 7.7099 37 1 7.3745 -3.7207 8.4223 38 1 8.3225 -5.0621 6.3806 39 1 1.3158 -1.4800 1.5754 40 1 2.3523 -0.0916 2.0083 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347949045.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:40 Heat of formation + Delta-G solvation = -67.928388 kcal Electronic energy + Delta-G solvation = -23085.509638 eV Core-core repulsion = 19639.000898 eV Total energy + Delta-G solvation = -3446.508740 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.27881 -39.30701 -38.09571 -35.32385 -32.88537 -32.51702 -31.80110 -29.98925 -29.57334 -27.05476 -26.40708 -24.42940 -23.02864 -20.92851 -20.34737 -20.07350 -19.40759 -17.98970 -17.06179 -16.53510 -16.08209 -15.66384 -15.06674 -14.94385 -14.43850 -14.28754 -14.14038 -13.66098 -13.19645 -12.98252 -12.81274 -12.36726 -12.12952 -11.88221 -11.73556 -11.57178 -11.53125 -11.28064 -11.07032 -11.02438 -10.95647 -10.82705 -10.56273 -10.51984 -10.34508 -9.78604 -9.31488 -9.02494 -8.80747 -8.78254 -8.69153 -7.30687 -6.18288 -4.40287 1.75878 2.94840 3.24094 3.27769 3.31440 3.61712 3.87657 3.99784 4.28642 4.30334 4.58136 4.68817 4.89756 5.12664 5.27655 5.34096 5.40834 5.50738 5.56076 5.71712 5.82212 5.86554 5.88704 5.95284 5.97940 6.01574 6.10303 6.12184 6.31717 6.39682 6.48667 6.51701 6.72735 6.80073 6.83892 6.98465 7.24658 7.52104 7.65935 7.83491 7.86643 8.44712 8.63157 9.06926 9.33684 10.80937 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.016703 B = 0.004645 C = 0.004087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.914681 B = 6026.429567 C = 6849.856829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.102 4.102 3 H 0.074 0.926 4 C -0.119 4.119 5 C -0.097 4.097 6 C -0.051 4.051 7 C -0.176 4.176 8 C 0.491 3.509 9 O -0.531 6.531 10 O -0.332 6.332 11 C 0.280 3.720 12 H 0.070 0.930 13 C -0.549 4.549 14 H 0.073 0.927 15 C 0.081 3.919 16 N -0.827 5.827 17 Si 0.897 3.103 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.272 1.272 21 C 0.083 3.917 22 C -0.266 4.266 23 C -0.221 4.221 24 C -0.082 4.082 25 O -0.117 6.117 26 C -0.088 4.088 27 H 0.056 0.944 28 H 0.051 0.949 29 H 0.056 0.944 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.134 0.866 35 H 0.267 0.733 36 H 0.132 0.868 37 H 0.130 0.870 38 H 0.183 0.817 39 H 0.089 0.911 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.533 8.420 -7.868 11.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.121 4.121 3 H 0.092 0.908 4 C -0.156 4.156 5 C -0.134 4.134 6 C -0.051 4.051 7 C -0.195 4.195 8 C 0.337 3.663 9 O -0.425 6.425 10 O -0.247 6.247 11 C 0.228 3.772 12 H 0.088 0.912 13 C -0.585 4.585 14 H 0.091 0.909 15 C -0.130 4.130 16 N -0.460 5.460 17 Si 0.723 3.277 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.198 1.198 21 C 0.029 3.971 22 C -0.285 4.285 23 C -0.241 4.241 24 C -0.152 4.152 25 O -0.008 6.008 26 C -0.125 4.125 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.103 0.897 33 H 0.095 0.905 34 H 0.152 0.848 35 H 0.077 0.923 36 H 0.150 0.850 37 H 0.148 0.852 38 H 0.200 0.800 39 H 0.107 0.893 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.600 8.275 -8.043 11.555 hybrid contribution -0.442 -1.038 0.581 1.269 sum -1.042 7.236 -7.462 10.447 Atomic orbital electron populations 1.21782 0.94874 1.01971 1.01413 1.22072 0.95738 0.99142 0.95125 0.90786 1.22637 0.95559 1.00001 0.97438 1.21571 0.97957 1.01729 0.92108 1.22822 0.94284 0.92932 0.95089 1.21486 1.02818 1.03191 0.92054 1.21087 0.80999 0.76356 0.87834 1.90707 1.28820 1.49007 1.73965 1.86819 1.53194 1.58277 1.26364 1.18750 0.86174 0.97148 0.75168 0.91189 1.21203 0.99946 0.91898 1.45441 0.90900 1.25154 0.95205 0.99105 0.93526 1.70041 1.16885 1.22930 1.36130 0.86574 0.81142 0.81056 0.78921 1.19778 1.20859 1.19761 1.22852 0.87439 0.92004 0.94781 1.21157 0.98858 1.11385 0.97096 1.21491 0.97142 1.05409 1.00041 1.23779 0.96085 1.06029 0.89273 1.84415 1.22725 1.55938 1.37767 1.21385 0.95532 0.98617 0.96960 0.92519 0.92945 0.92481 0.91045 0.91325 0.89721 0.90489 0.84825 0.92265 0.84961 0.85182 0.80047 0.89302 0.89839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.12 37.16 0.34 -1.12 16 2 C -0.10 -1.14 3.49 -88.91 -0.31 -1.45 16 3 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 4 C -0.12 -1.20 6.39 -24.56 -0.16 -1.35 16 5 C -0.10 -1.08 6.66 -26.19 -0.17 -1.26 16 6 C -0.05 -0.77 6.15 -100.21 -0.62 -1.39 16 7 C -0.18 -3.23 10.06 -37.85 -0.38 -3.61 16 8 C 0.49 11.33 7.87 34.26 0.27 11.60 16 9 O -0.53 -12.80 13.37 -19.30 -0.26 -13.06 16 10 O -0.33 -8.64 9.26 -43.55 -0.40 -9.04 16 11 C 0.28 7.41 2.58 -29.04 -0.07 7.34 16 12 H 0.07 1.81 7.16 -51.93 -0.37 1.44 16 13 C -0.55 -15.36 8.91 -34.44 -0.31 -15.67 16 14 H 0.07 2.02 7.81 -52.48 -0.41 1.61 16 15 C 0.08 2.22 5.24 -17.82 -0.09 2.12 16 16 N -0.83 -23.19 10.63 55.43 0.59 -22.60 16 17 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 18 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 21 C 0.08 2.11 5.59 -35.62 -0.20 1.91 16 22 C -0.27 -6.02 10.81 -39.70 -0.43 -6.45 16 23 C -0.22 -4.47 10.91 -39.70 -0.43 -4.90 16 24 C -0.08 -1.71 12.09 29.42 0.36 -1.36 16 25 O -0.12 -2.96 8.88 2.06 0.02 -2.94 16 26 C -0.09 -1.31 4.40 -26.85 -0.12 -1.43 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.73 8.05 -51.93 -0.42 0.32 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.13 2.23 8.06 -52.49 -0.42 1.81 16 35 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 36 H 0.13 2.72 8.06 -52.49 -0.42 2.30 16 37 H 0.13 2.16 8.06 -52.48 -0.42 1.74 16 38 H 0.18 2.96 8.06 -52.49 -0.42 2.53 16 39 H 0.09 1.50 7.35 -51.93 -0.38 1.12 16 40 H 0.08 1.34 7.69 -51.93 -0.40 0.94 16 LS Contribution 338.85 15.07 5.11 5.11 Total: -1.00 -31.20 338.85 -8.06 -39.27 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -5.77 Total: 4.15 kcal Atomic # 6 Polarization: -14.68 SS G_CDS: -2.33 Total: -17.01 kcal Atomic # 7 Polarization: -23.19 SS G_CDS: 0.59 Total: -22.60 kcal Atomic # 8 Polarization: -24.39 SS G_CDS: -0.64 Total: -25.03 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.20 -8.06 -39.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347949045.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.661 kcal (2) G-P(sol) polarization free energy of solvation -31.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds