Wall clock time and date at job start Tue Mar 31 2020 06:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 110.62340 * 2 1 4 4 C 1.54982 * 110.57098 * 237.16212 * 2 1 3 5 5 C 1.55131 * 102.22552 * 204.16767 * 4 2 1 6 6 C 1.51849 * 104.31627 * 37.93684 * 5 4 2 7 7 C 1.33078 * 126.33902 * 156.13496 * 6 5 4 8 8 C 1.46954 * 119.99946 * 179.68807 * 7 6 5 9 9 O 1.21544 * 119.99773 * 359.97438 * 8 7 6 10 10 O 1.34794 * 120.00082 * 180.02562 * 8 7 6 11 11 C 1.45207 * 116.99858 * 179.97438 * 10 8 7 12 12 H 1.09003 * 109.47032 * 329.99585 * 11 10 8 13 13 C 1.50694 * 109.47243 * 89.99829 * 11 10 8 14 14 H 1.08006 * 119.99993 * 239.99909 * 13 11 10 15 15 C 1.37879 * 120.00087 * 59.99798 * 13 11 10 16 16 N 1.31512 * 120.00057 * 0.02562 * 15 13 11 17 17 Si 1.86797 * 119.99912 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.47360 * 60.00079 * 17 15 13 19 19 H 1.48501 * 109.47137 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47478 * 300.00001 * 17 15 13 21 21 C 1.50700 * 109.46696 * 209.99899 * 11 10 8 22 22 C 1.34520 * 125.78639 * 145.00440 * 21 11 10 23 23 C 1.41381 * 106.83580 * 180.22245 * 22 21 11 24 24 C 1.34513 * 106.84363 * 359.57150 * 23 22 21 25 25 O 1.34302 * 125.79150 * 324.95481 * 21 11 10 26 26 C 1.51448 * 107.31258 * 335.86889 * 6 5 4 27 27 H 1.08997 * 109.47200 * 298.62031 * 1 2 3 28 28 H 1.08996 * 109.46817 * 58.62227 * 1 2 3 29 29 H 1.09002 * 109.46993 * 178.62022 * 1 2 3 30 30 H 1.09005 * 110.83526 * 322.56235 * 4 2 1 31 31 H 1.08995 * 110.83114 * 85.93949 * 4 2 1 32 32 H 1.08994 * 110.58190 * 279.19551 * 5 4 2 33 33 H 1.08996 * 110.41222 * 156.59051 * 5 4 2 34 34 H 1.08002 * 120.00403 * 359.68112 * 7 6 5 35 35 H 0.96994 * 120.00038 * 179.97438 * 16 15 13 36 36 H 1.08002 * 126.57789 * 359.95308 * 22 21 11 37 37 H 1.08009 * 126.57222 * 179.73218 * 23 22 21 38 38 H 1.07998 * 125.78715 * 180.12081 * 24 23 22 39 39 H 1.09006 * 109.98119 * 119.95585 * 26 6 5 40 40 H 1.09006 * 109.98211 * 241.24880 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9139 1.0202 0.0000 4 6 2.0746 -0.7868 -1.2191 5 6 3.4850 -1.2116 -0.7326 6 6 3.2911 -1.5444 0.7362 7 6 4.0545 -2.3510 1.4695 8 6 3.7412 -2.5698 2.8885 9 8 2.7851 -2.0137 3.3924 10 8 4.5146 -3.3864 3.6313 11 6 4.1461 -3.5552 5.0256 12 1 3.6642 -2.6466 5.3866 13 6 3.1931 -4.7152 5.1565 14 1 2.2039 -4.5585 5.5606 15 6 3.5840 -5.9767 4.7602 16 7 4.7888 -6.1676 4.2685 17 14 2.4025 -7.4144 4.9217 18 1 1.1841 -7.1468 4.1160 19 1 3.0593 -8.6524 4.4306 20 1 2.0250 -7.5872 6.3475 21 6 5.3829 -3.8265 5.8428 22 6 5.6014 -3.4070 7.1021 23 6 6.8808 -3.8794 7.4749 24 6 7.3635 -4.5673 6.4246 25 8 6.4535 -4.5289 5.4376 26 6 2.0720 -0.7832 1.2137 27 1 -0.3633 0.4922 0.9021 28 1 -0.3633 0.5351 -0.8774 29 1 -0.3633 -1.0274 -0.0247 30 1 1.4534 -1.6581 -1.4271 31 1 2.1432 -0.1436 -2.0964 32 1 4.1930 -0.3908 -0.8467 33 1 3.8274 -2.0898 -1.2799 34 1 4.9042 -2.8449 1.0217 35 1 5.0639 -7.0551 3.9901 36 1 4.9303 -2.8182 7.7099 37 1 7.3745 -3.7207 8.4223 38 1 8.3225 -5.0621 6.3806 39 1 1.3158 -1.4800 1.5754 40 1 2.3523 -0.0916 2.0083 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347949045.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:39 Heat of formation + Delta-G solvation = -83.958662 kcal Electronic energy + Delta-G solvation = -23086.204763 eV Core-core repulsion = 19639.000898 eV Total energy + Delta-G solvation = -3447.203865 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.05147 -40.99119 -39.35564 -37.18236 -34.91855 -33.74998 -33.56689 -31.71568 -30.72308 -28.52733 -28.05362 -25.76785 -24.69684 -22.56306 -21.99327 -21.21535 -21.01590 -19.44471 -18.99173 -18.28523 -17.79902 -17.09416 -16.74020 -16.52620 -16.26685 -16.09439 -15.44606 -14.85668 -14.62218 -14.51928 -13.93176 -13.72216 -13.57024 -13.50602 -13.37559 -13.12442 -13.03950 -12.93909 -12.83725 -12.46818 -12.30880 -12.23163 -11.85910 -11.75464 -11.52548 -11.40630 -11.12943 -10.92729 -10.78597 -10.50657 -10.14401 -9.08998 -8.23274 -6.54462 0.30224 1.17912 1.34563 1.37688 1.44432 1.91030 2.16594 2.31601 2.32832 2.59036 3.07037 3.47592 3.70844 3.97610 4.02317 4.21408 4.30243 4.38636 4.39979 4.48534 4.49753 4.58039 4.64207 4.69851 4.87561 4.92851 4.99378 5.06722 5.12111 5.16721 5.19616 5.21503 5.32975 5.41884 5.42753 5.51511 5.56178 5.57342 5.79121 5.89193 6.00196 6.49604 6.71125 7.14910 7.27648 8.74655 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.016703 B = 0.004645 C = 0.004087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.914681 B = 6026.429567 C = 6849.856829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.095 4.095 3 H 0.091 0.909 4 C -0.113 4.113 5 C -0.094 4.094 6 C -0.021 4.021 7 C -0.215 4.215 8 C 0.478 3.522 9 O -0.556 6.556 10 O -0.350 6.350 11 C 0.279 3.721 12 H 0.055 0.945 13 C -0.579 4.579 14 H 0.059 0.941 15 C 0.041 3.959 16 N -0.847 5.847 17 Si 0.957 3.043 18 H -0.273 1.273 19 H -0.271 1.271 20 H -0.268 1.268 21 C 0.041 3.959 22 C -0.266 4.266 23 C -0.218 4.218 24 C -0.082 4.082 25 O -0.147 6.147 26 C -0.097 4.097 27 H 0.049 0.951 28 H 0.077 0.923 29 H 0.047 0.953 30 H 0.069 0.931 31 H 0.102 0.898 32 H 0.111 0.889 33 H 0.092 0.908 34 H 0.147 0.853 35 H 0.269 0.731 36 H 0.145 0.855 37 H 0.172 0.828 38 H 0.226 0.774 39 H 0.062 0.938 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.063 8.751 -9.347 12.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.114 4.114 3 H 0.109 0.891 4 C -0.150 4.150 5 C -0.130 4.130 6 C -0.022 4.022 7 C -0.234 4.234 8 C 0.327 3.673 9 O -0.451 6.451 10 O -0.266 6.266 11 C 0.226 3.774 12 H 0.073 0.927 13 C -0.614 4.614 14 H 0.077 0.923 15 C -0.168 4.168 16 N -0.480 5.480 17 Si 0.781 3.219 18 H -0.198 1.198 19 H -0.195 1.195 20 H -0.192 1.192 21 C -0.012 4.012 22 C -0.285 4.285 23 C -0.237 4.237 24 C -0.150 4.150 25 O -0.040 6.040 26 C -0.133 4.133 27 H 0.068 0.932 28 H 0.096 0.904 29 H 0.066 0.934 30 H 0.087 0.913 31 H 0.120 0.880 32 H 0.129 0.871 33 H 0.110 0.890 34 H 0.165 0.835 35 H 0.078 0.922 36 H 0.163 0.837 37 H 0.189 0.811 38 H 0.242 0.758 39 H 0.080 0.920 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.002 8.617 -9.525 12.844 hybrid contribution -0.625 -0.997 1.051 1.578 sum -0.627 7.620 -8.474 11.413 Atomic orbital electron populations 1.21784 0.94207 1.01722 1.02308 1.22075 0.96303 0.99492 0.93481 0.89053 1.22672 0.94201 1.00307 0.97798 1.21756 0.99602 1.03290 0.88384 1.23390 0.92180 0.89263 0.97324 1.21400 1.05482 1.06874 0.89673 1.22020 0.80348 0.75463 0.89473 1.90671 1.29732 1.49938 1.74805 1.86788 1.53992 1.59464 1.26327 1.18585 0.87195 0.96007 0.75578 0.92682 1.21359 0.99985 0.93335 1.46768 0.92257 1.25829 0.96792 1.01121 0.93034 1.70159 1.18043 1.23336 1.36435 0.85643 0.79043 0.78240 0.78992 1.19834 1.19523 1.19245 1.22746 0.88080 0.94565 0.95776 1.21552 1.00208 1.10563 0.96188 1.21906 0.95855 1.04392 1.01540 1.24739 0.96636 1.05352 0.88307 1.84348 1.23439 1.56475 1.39708 1.21481 0.94966 0.98245 0.98656 0.93175 0.90433 0.93434 0.91274 0.87984 0.87074 0.88982 0.83541 0.92193 0.83745 0.81094 0.75765 0.91977 0.91542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 9.12 71.98 0.66 -2.02 16 2 C -0.10 -1.92 3.49 -9.68 -0.03 -1.95 16 3 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 4 C -0.11 -1.85 6.39 32.00 0.20 -1.65 16 5 C -0.09 -1.81 6.66 30.95 0.21 -1.60 16 6 C -0.02 -0.63 6.15 -17.00 -0.10 -0.73 16 7 C -0.22 -8.16 10.06 23.40 0.24 -7.92 16 8 C 0.48 23.55 7.87 70.11 0.55 24.10 16 9 O -0.56 -28.85 13.37 19.69 0.26 -28.59 16 10 O -0.35 -19.40 9.26 -54.37 -0.50 -19.91 16 11 C 0.28 15.70 2.58 29.10 0.08 15.77 16 12 H 0.06 3.11 7.16 -2.39 -0.02 3.09 16 13 C -0.58 -34.06 8.91 25.60 0.23 -33.83 16 14 H 0.06 3.50 7.81 -2.91 -0.02 3.48 16 15 C 0.04 2.29 5.24 84.66 0.44 2.74 16 16 N -0.85 -48.66 10.63 21.45 0.23 -48.43 16 17 Si 0.96 44.23 29.54 68.60 2.03 46.25 16 18 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 19 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 20 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 21 C 0.04 2.16 5.59 24.83 0.14 2.30 16 22 C -0.27 -12.12 10.81 22.19 0.24 -11.88 16 23 C -0.22 -8.38 10.91 22.19 0.24 -8.13 16 24 C -0.08 -3.29 12.09 66.97 0.81 -2.48 16 25 O -0.15 -7.54 8.88 1.02 0.01 -7.53 16 26 C -0.10 -2.92 4.40 30.52 0.13 -2.79 16 27 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.07 1.20 8.05 -2.38 -0.02 1.18 16 31 H 0.10 1.11 8.14 -2.39 -0.02 1.10 16 32 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.15 5.02 8.06 -2.91 -0.02 5.00 16 35 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 36 H 0.14 6.01 8.06 -2.91 -0.02 5.99 16 37 H 0.17 5.04 8.06 -2.91 -0.02 5.02 16 38 H 0.23 6.61 8.06 -2.91 -0.02 6.59 16 39 H 0.06 2.23 7.35 -2.38 -0.02 2.21 16 40 H 0.07 2.23 7.69 -2.38 -0.02 2.21 16 Total: -1.00 -72.18 338.85 7.08 -65.10 By element: Atomic # 1 Polarization: 22.15 SS G_CDS: 1.03 Total: 23.17 kcal Atomic # 6 Polarization: -34.10 SS G_CDS: 4.03 Total: -30.07 kcal Atomic # 7 Polarization: -48.66 SS G_CDS: 0.23 Total: -48.43 kcal Atomic # 8 Polarization: -55.79 SS G_CDS: -0.23 Total: -56.02 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.25 kcal Total: -72.18 7.08 -65.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347949045.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.856 kcal (2) G-P(sol) polarization free energy of solvation -72.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds