Wall clock time and date at job start Tue Mar 31 2020 06:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 110.73587 * 2 1 4 4 C 1.54982 * 110.83560 * 236.56154 * 2 1 3 5 5 C 1.54282 * 103.74867 * 204.70531 * 4 2 1 6 6 C 1.51441 * 106.85298 * 23.12529 * 5 4 2 7 7 C 1.33086 * 126.34498 * 180.33765 * 6 5 4 8 8 C 1.46948 * 119.99305 * 0.02562 * 7 6 5 9 9 O 1.21536 * 120.00616 * 0.02562 * 8 7 6 10 10 O 1.34804 * 119.99377 * 180.02562 * 8 7 6 11 11 C 1.45206 * 117.00009 * 179.97438 * 10 8 7 12 12 H 1.09008 * 109.46824 * 30.00082 * 11 10 8 13 13 C 1.50696 * 109.47124 * 270.00628 * 11 10 8 14 14 H 1.07999 * 120.00319 * 120.00027 * 13 11 10 15 15 C 1.37885 * 119.99717 * 299.99411 * 13 11 10 16 16 N 1.31516 * 119.99913 * 180.02562 * 15 13 11 17 17 Si 1.86798 * 119.99766 * 0.02562 * 15 13 11 18 18 H 1.48500 * 109.47353 * 269.99586 * 17 15 13 19 19 H 1.48501 * 109.47293 * 30.00037 * 17 15 13 20 20 H 1.48504 * 109.46680 * 149.99835 * 17 15 13 21 21 C 1.50692 * 109.47182 * 149.99887 * 11 10 8 22 22 C 1.34515 * 125.79160 * 220.00487 * 21 11 10 23 23 C 1.41381 * 106.84187 * 180.02562 * 22 21 11 24 24 C 1.34512 * 106.84191 * 359.97438 * 23 22 21 25 25 O 1.34301 * 108.41756 * 359.73974 * 24 23 22 26 26 C 1.51846 * 107.31524 * 0.59603 * 6 5 4 27 27 H 1.08997 * 109.47148 * 183.43240 * 1 2 3 28 28 H 1.09001 * 109.47835 * 303.44097 * 1 2 3 29 29 H 1.09005 * 109.46862 * 63.44127 * 1 2 3 30 30 H 1.09005 * 110.56836 * 86.14260 * 4 2 1 31 31 H 1.08992 * 110.57122 * 323.27299 * 4 2 1 32 32 H 1.08999 * 109.98188 * 263.77515 * 5 4 2 33 33 H 1.09000 * 110.01742 * 142.49099 * 5 4 2 34 34 H 1.07993 * 119.99920 * 180.02562 * 7 6 5 35 35 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 36 36 H 1.08001 * 126.57914 * 359.95760 * 22 21 11 37 37 H 1.08003 * 126.58157 * 180.02562 * 23 22 21 38 38 H 1.07999 * 125.78842 * 180.02562 * 24 23 22 39 39 H 1.08997 * 110.44108 * 94.71277 * 26 6 5 40 40 H 1.09008 * 110.44036 * 217.23073 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9159 1.0194 0.0000 4 6 2.0812 -0.7982 -1.2087 5 6 3.4840 -1.2428 -0.7454 6 6 3.4693 -1.2348 0.7689 7 6 4.4852 -1.5492 1.5692 8 6 5.7761 -1.9517 0.9940 9 8 5.9164 -1.9971 -0.2124 10 8 6.8049 -2.2706 1.8046 11 6 8.0503 -2.6596 1.1673 12 1 8.1413 -2.1514 0.2072 13 6 8.0586 -4.1506 0.9491 14 1 8.1463 -4.5497 -0.0506 15 6 7.9544 -5.0055 2.0260 16 7 7.9621 -6.3068 1.8357 17 14 7.8022 -4.3152 3.7551 18 1 9.1561 -4.1426 4.3402 19 1 7.1135 -3.0005 3.7044 20 1 7.0159 -5.2538 4.5953 21 6 9.2085 -2.2746 2.0511 22 6 10.3799 -1.7614 1.6338 23 6 11.1694 -1.5518 2.7877 24 6 10.4332 -1.9488 3.8412 25 8 9.2442 -2.3800 3.3895 26 6 2.0790 -0.8080 1.2051 27 1 -0.3633 -1.0258 0.0615 28 1 -0.3635 0.5663 0.8575 29 1 -0.3633 0.4595 -0.9193 30 1 2.1532 -0.1591 -2.0889 31 1 1.4530 -1.6649 -1.4139 32 1 4.2365 -0.5458 -1.1144 33 1 3.6965 -2.2476 -1.1106 34 1 4.3607 -1.5084 2.6411 35 1 7.8892 -6.9081 2.5933 36 1 10.6632 -1.5510 0.6131 37 1 12.1712 -1.1492 2.8178 38 1 10.7437 -1.9209 4.8752 39 1 1.4554 -1.6811 1.3971 40 1 2.1353 -0.1768 2.0921 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347949047.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:45 Heat of formation + Delta-G solvation = -55.685736 kcal Electronic energy + Delta-G solvation = -23156.693202 eV Core-core repulsion = 19710.715343 eV Total energy + Delta-G solvation = -3445.977859 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.93363 -39.50137 -38.26898 -35.63689 -32.94103 -32.58869 -32.35504 -30.52718 -29.75634 -27.46435 -26.72295 -24.23346 -22.87097 -21.42709 -20.81110 -20.16471 -19.78450 -18.31199 -17.51457 -17.07598 -16.35454 -15.78330 -15.59434 -15.10703 -14.83991 -14.44816 -14.00578 -13.65645 -13.44335 -13.37758 -13.04442 -12.79918 -12.42867 -12.20301 -11.90355 -11.88715 -11.69374 -11.50700 -11.21246 -11.08577 -10.92566 -10.78332 -10.59902 -10.58492 -10.10361 -9.61829 -9.30897 -9.18783 -9.02051 -8.89385 -8.62051 -7.68278 -6.31558 -4.45150 1.62111 2.42980 3.13322 3.25017 3.43233 3.53252 3.75561 3.83299 4.19022 4.42533 4.46326 4.59750 4.79023 5.05723 5.10854 5.26515 5.35919 5.41924 5.45579 5.55125 5.56404 5.65191 5.66502 5.72694 5.78514 5.91591 5.98802 6.09265 6.11381 6.28577 6.30620 6.35486 6.47468 6.54723 6.61304 6.73298 6.87732 7.13677 7.26592 7.54488 7.87768 8.18597 8.65712 8.81440 9.28383 10.75572 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.021841 B = 0.004391 C = 0.004165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.685747 B = 6375.672015 C = 6720.976645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.098 4.098 3 H 0.079 0.921 4 C -0.124 4.124 5 C -0.095 4.095 6 C -0.042 4.042 7 C -0.185 4.185 8 C 0.492 3.508 9 O -0.519 6.519 10 O -0.355 6.355 11 C 0.250 3.750 12 H 0.090 0.910 13 C -0.536 4.536 14 H 0.089 0.911 15 C 0.087 3.913 16 N -0.869 5.869 17 Si 0.890 3.110 18 H -0.270 1.270 19 H -0.221 1.221 20 H -0.299 1.299 21 C 0.035 3.965 22 C -0.231 4.231 23 C -0.206 4.206 24 C -0.076 4.076 25 O -0.163 6.163 26 C -0.094 4.094 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.134 0.866 35 H 0.270 0.730 36 H 0.142 0.858 37 H 0.140 0.860 38 H 0.187 0.813 39 H 0.088 0.912 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.061 12.576 0.898 15.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.116 4.116 3 H 0.097 0.903 4 C -0.161 4.161 5 C -0.132 4.132 6 C -0.043 4.043 7 C -0.204 4.204 8 C 0.339 3.661 9 O -0.411 6.411 10 O -0.272 6.272 11 C 0.198 3.802 12 H 0.108 0.892 13 C -0.571 4.571 14 H 0.107 0.893 15 C -0.121 4.121 16 N -0.503 5.503 17 Si 0.723 3.277 18 H -0.199 1.199 19 H -0.146 1.146 20 H -0.228 1.228 21 C -0.016 4.016 22 C -0.251 4.251 23 C -0.225 4.225 24 C -0.142 4.142 25 O -0.060 6.060 26 C -0.130 4.130 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.104 0.896 33 H 0.107 0.893 34 H 0.152 0.848 35 H 0.080 0.920 36 H 0.160 0.840 37 H 0.158 0.842 38 H 0.204 0.796 39 H 0.106 0.894 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.206 12.255 0.770 15.347 hybrid contribution 0.504 -0.029 0.920 1.049 sum -8.702 12.227 1.690 15.102 Atomic orbital electron populations 1.21763 0.94749 1.01940 1.01611 1.22174 0.95428 0.99191 0.94809 0.90290 1.22544 0.96406 0.99677 0.97503 1.21327 0.96640 1.03618 0.91590 1.22871 0.93838 0.91274 0.96318 1.21470 0.91166 1.07506 1.00293 1.21117 0.85591 0.74007 0.85395 1.90729 1.84027 1.50288 1.16023 1.87043 1.22361 1.76357 1.41463 1.19228 0.75123 0.96896 0.89000 0.89212 1.21105 1.52824 0.86663 0.96502 0.89257 1.25197 0.91594 0.94642 1.00676 1.69935 1.45314 1.02547 1.32549 0.86472 0.78792 0.79919 0.82507 1.19907 1.14635 1.22826 1.23094 0.99115 0.98442 0.80913 1.21234 0.94765 1.09350 0.99705 1.21614 1.01026 1.07445 0.92394 1.23776 0.86239 1.04629 0.99574 1.84563 1.34562 1.64491 1.22422 1.21680 0.92764 1.00155 0.98443 0.92484 0.92690 0.92559 0.91386 0.91345 0.89574 0.89286 0.84840 0.92017 0.84010 0.84244 0.79567 0.89377 0.90509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 9.29 37.15 0.35 -0.75 16 2 C -0.10 -0.92 3.54 -88.45 -0.31 -1.23 16 3 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 4 C -0.12 -1.31 6.32 -25.01 -0.16 -1.47 16 5 C -0.10 -1.36 4.82 -26.85 -0.13 -1.49 16 6 C -0.04 -0.62 6.15 -100.21 -0.62 -1.23 16 7 C -0.19 -3.21 10.06 -37.85 -0.38 -3.59 16 8 C 0.49 10.84 7.87 34.26 0.27 11.11 16 9 O -0.52 -12.10 13.37 -19.29 -0.26 -12.36 16 10 O -0.35 -8.63 6.70 -42.87 -0.29 -8.92 16 11 C 0.25 6.30 2.56 -29.04 -0.07 6.22 16 12 H 0.09 2.19 7.15 -51.92 -0.37 1.82 16 13 C -0.54 -15.52 9.52 -34.44 -0.33 -15.85 16 14 H 0.09 2.78 8.06 -52.49 -0.42 2.36 16 15 C 0.09 2.55 5.45 -17.82 -0.10 2.45 16 16 N -0.87 -26.54 13.96 55.43 0.77 -25.76 16 17 Si 0.89 22.80 22.88 -169.99 -3.89 18.91 16 18 H -0.27 -6.77 5.87 56.52 0.33 -6.44 16 19 H -0.22 -5.50 4.98 56.52 0.28 -5.22 16 20 H -0.30 -7.62 7.11 56.52 0.40 -7.22 16 21 C 0.03 0.82 5.46 -35.63 -0.19 0.63 16 22 C -0.23 -4.77 10.80 -39.70 -0.43 -5.20 16 23 C -0.21 -3.73 10.91 -39.70 -0.43 -4.17 16 24 C -0.08 -1.44 11.71 29.42 0.34 -1.09 16 25 O -0.16 -3.76 4.54 4.34 0.02 -3.74 16 26 C -0.09 -1.00 6.10 -26.19 -0.16 -1.16 16 27 H 0.06 0.43 8.08 -51.93 -0.42 0.01 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.69 8.04 -51.93 -0.42 0.27 16 32 H 0.09 1.32 7.66 -51.93 -0.40 0.92 16 33 H 0.09 1.45 7.69 -51.93 -0.40 1.05 16 34 H 0.13 2.05 8.06 -52.49 -0.42 1.63 16 35 H 0.27 7.70 8.31 -40.82 -0.34 7.36 16 36 H 0.14 2.61 8.06 -52.49 -0.42 2.18 16 37 H 0.14 2.02 8.06 -52.48 -0.42 1.59 16 38 H 0.19 2.72 8.06 -52.49 -0.42 2.29 16 39 H 0.09 0.88 8.01 -51.93 -0.42 0.47 16 40 H 0.08 0.73 8.14 -51.92 -0.42 0.31 16 LS Contribution 325.91 15.07 4.91 4.91 Total: -1.00 -32.86 325.91 -7.06 -39.92 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -5.97 Total: 3.86 kcal Atomic # 6 Polarization: -14.47 SS G_CDS: -2.35 Total: -16.82 kcal Atomic # 7 Polarization: -26.54 SS G_CDS: 0.77 Total: -25.76 kcal Atomic # 8 Polarization: -24.49 SS G_CDS: -0.53 Total: -25.01 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -3.89 Total: 18.91 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.86 -7.06 -39.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347949047.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.769 kcal (2) G-P(sol) polarization free energy of solvation -32.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds