Wall clock time and date at job start Tue Mar 31 2020 06:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 110.73587 * 2 1 4 4 C 1.54982 * 110.83560 * 236.56154 * 2 1 3 5 5 C 1.54282 * 103.74867 * 204.70531 * 4 2 1 6 6 C 1.51441 * 106.85298 * 23.12529 * 5 4 2 7 7 C 1.33086 * 126.34498 * 180.33765 * 6 5 4 8 8 C 1.46948 * 119.99305 * 0.02562 * 7 6 5 9 9 O 1.21536 * 120.00616 * 0.02562 * 8 7 6 10 10 O 1.34804 * 119.99377 * 180.02562 * 8 7 6 11 11 C 1.45206 * 117.00009 * 179.97438 * 10 8 7 12 12 H 1.09008 * 109.46824 * 30.00082 * 11 10 8 13 13 C 1.50696 * 109.47124 * 270.00628 * 11 10 8 14 14 H 1.07999 * 120.00319 * 120.00027 * 13 11 10 15 15 C 1.37885 * 119.99717 * 299.99411 * 13 11 10 16 16 N 1.31516 * 119.99913 * 180.02562 * 15 13 11 17 17 Si 1.86798 * 119.99766 * 0.02562 * 15 13 11 18 18 H 1.48500 * 109.47353 * 269.99586 * 17 15 13 19 19 H 1.48501 * 109.47293 * 30.00037 * 17 15 13 20 20 H 1.48504 * 109.46680 * 149.99835 * 17 15 13 21 21 C 1.50692 * 109.47182 * 149.99887 * 11 10 8 22 22 C 1.34515 * 125.79160 * 220.00487 * 21 11 10 23 23 C 1.41381 * 106.84187 * 180.02562 * 22 21 11 24 24 C 1.34512 * 106.84191 * 359.97438 * 23 22 21 25 25 O 1.34301 * 108.41756 * 359.73974 * 24 23 22 26 26 C 1.51846 * 107.31524 * 0.59603 * 6 5 4 27 27 H 1.08997 * 109.47148 * 183.43240 * 1 2 3 28 28 H 1.09001 * 109.47835 * 303.44097 * 1 2 3 29 29 H 1.09005 * 109.46862 * 63.44127 * 1 2 3 30 30 H 1.09005 * 110.56836 * 86.14260 * 4 2 1 31 31 H 1.08992 * 110.57122 * 323.27299 * 4 2 1 32 32 H 1.08999 * 109.98188 * 263.77515 * 5 4 2 33 33 H 1.09000 * 110.01742 * 142.49099 * 5 4 2 34 34 H 1.07993 * 119.99920 * 180.02562 * 7 6 5 35 35 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 36 36 H 1.08001 * 126.57914 * 359.95760 * 22 21 11 37 37 H 1.08003 * 126.58157 * 180.02562 * 23 22 21 38 38 H 1.07999 * 125.78842 * 180.02562 * 24 23 22 39 39 H 1.08997 * 110.44108 * 94.71277 * 26 6 5 40 40 H 1.09008 * 110.44036 * 217.23073 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9159 1.0194 0.0000 4 6 2.0812 -0.7982 -1.2087 5 6 3.4840 -1.2428 -0.7454 6 6 3.4693 -1.2348 0.7689 7 6 4.4852 -1.5492 1.5692 8 6 5.7761 -1.9517 0.9940 9 8 5.9164 -1.9971 -0.2124 10 8 6.8049 -2.2706 1.8046 11 6 8.0503 -2.6596 1.1673 12 1 8.1413 -2.1514 0.2072 13 6 8.0586 -4.1506 0.9491 14 1 8.1463 -4.5497 -0.0506 15 6 7.9544 -5.0055 2.0260 16 7 7.9621 -6.3068 1.8357 17 14 7.8022 -4.3152 3.7551 18 1 9.1561 -4.1426 4.3402 19 1 7.1135 -3.0005 3.7044 20 1 7.0159 -5.2538 4.5953 21 6 9.2085 -2.2746 2.0511 22 6 10.3799 -1.7614 1.6338 23 6 11.1694 -1.5518 2.7877 24 6 10.4332 -1.9488 3.8412 25 8 9.2442 -2.3800 3.3895 26 6 2.0790 -0.8080 1.2051 27 1 -0.3633 -1.0258 0.0615 28 1 -0.3635 0.5663 0.8575 29 1 -0.3633 0.4595 -0.9193 30 1 2.1532 -0.1591 -2.0889 31 1 1.4530 -1.6649 -1.4139 32 1 4.2365 -0.5458 -1.1144 33 1 3.6965 -2.2476 -1.1106 34 1 4.3607 -1.5084 2.6411 35 1 7.8892 -6.9081 2.5933 36 1 10.6632 -1.5510 0.6131 37 1 12.1712 -1.1492 2.8178 38 1 10.7437 -1.9209 4.8752 39 1 1.4554 -1.6811 1.3971 40 1 2.1353 -0.1768 2.0921 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347949047.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:44 Heat of formation + Delta-G solvation = -75.190136 kcal Electronic energy + Delta-G solvation = -23157.538976 eV Core-core repulsion = 19710.715343 eV Total energy + Delta-G solvation = -3446.823633 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.55976 -41.16671 -39.43218 -37.42915 -35.05677 -33.99779 -33.74142 -32.32463 -30.78249 -28.82403 -28.22702 -25.51584 -24.57121 -23.00249 -22.34742 -21.48746 -21.00639 -19.87262 -19.22968 -18.79538 -18.06300 -17.50603 -16.94395 -16.76676 -16.35341 -15.86046 -15.64309 -15.13615 -15.00567 -14.56059 -14.24180 -14.03812 -13.85551 -13.58389 -13.44878 -13.37901 -13.18337 -12.75478 -12.70874 -12.60874 -12.26697 -12.06766 -11.82451 -11.66998 -11.50940 -11.41958 -11.17732 -11.06068 -10.84957 -10.51246 -10.20014 -9.33013 -8.55365 -6.74665 0.22680 0.78372 1.23931 1.36861 1.55217 1.75485 2.06616 2.14726 2.33032 2.49941 2.90005 3.41936 3.64811 3.88355 4.04113 4.06497 4.18625 4.21837 4.30779 4.39360 4.42300 4.50433 4.59877 4.70512 4.79712 4.91187 4.93610 5.00699 5.04062 5.08240 5.10331 5.12525 5.21520 5.26144 5.34574 5.38084 5.45577 5.55904 5.69306 5.75712 5.98550 6.25950 6.34907 6.95951 7.08086 8.56227 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.021841 B = 0.004391 C = 0.004165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.685747 B = 6375.672015 C = 6720.976645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.091 4.091 3 H 0.085 0.915 4 C -0.117 4.117 5 C -0.104 4.104 6 C -0.016 4.016 7 C -0.219 4.219 8 C 0.479 3.521 9 O -0.547 6.547 10 O -0.362 6.362 11 C 0.260 3.740 12 H 0.081 0.919 13 C -0.552 4.552 14 H 0.043 0.957 15 C 0.041 3.959 16 N -0.917 5.917 17 Si 0.953 3.047 18 H -0.258 1.258 19 H -0.215 1.215 20 H -0.300 1.300 21 C -0.012 4.012 22 C -0.222 4.222 23 C -0.202 4.202 24 C -0.073 4.073 25 O -0.186 6.186 26 C -0.091 4.091 27 H 0.058 0.942 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.061 0.939 34 H 0.155 0.845 35 H 0.275 0.725 36 H 0.156 0.844 37 H 0.183 0.817 38 H 0.234 0.766 39 H 0.104 0.896 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.968 15.153 3.016 18.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.109 4.109 3 H 0.103 0.897 4 C -0.154 4.154 5 C -0.141 4.141 6 C -0.017 4.017 7 C -0.237 4.237 8 C 0.328 3.672 9 O -0.440 6.440 10 O -0.279 6.279 11 C 0.207 3.793 12 H 0.099 0.901 13 C -0.588 4.588 14 H 0.061 0.939 15 C -0.162 4.162 16 N -0.553 5.553 17 Si 0.784 3.216 18 H -0.185 1.185 19 H -0.140 1.140 20 H -0.230 1.230 21 C -0.061 4.061 22 C -0.241 4.241 23 C -0.221 4.221 24 C -0.138 4.138 25 O -0.085 6.085 26 C -0.127 4.127 27 H 0.077 0.923 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.098 0.902 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.173 0.827 35 H 0.084 0.916 36 H 0.174 0.826 37 H 0.200 0.800 38 H 0.250 0.750 39 H 0.122 0.878 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -10.115 14.849 2.872 18.195 hybrid contribution 0.806 -0.717 0.087 1.082 sum -9.309 14.132 2.959 17.180 Atomic orbital electron populations 1.21736 0.92812 1.02465 1.02667 1.22184 0.96902 0.98882 0.92980 0.89709 1.22534 0.93722 1.00468 0.98706 1.21411 0.99037 1.01792 0.91872 1.23389 0.95019 0.87023 0.96224 1.21445 0.89474 1.11189 1.01634 1.22095 0.86530 0.73295 0.85257 1.90708 1.84468 1.51751 1.17106 1.86980 1.22540 1.76830 1.41594 1.18809 0.76194 0.94297 0.89991 0.90104 1.21179 1.53561 0.89427 0.94673 0.93853 1.25985 0.91024 0.94665 1.04566 1.70038 1.47567 1.03875 1.33830 0.85508 0.79367 0.79195 0.77579 1.18539 1.14039 1.22964 1.22721 0.99338 1.02492 0.81570 1.21687 0.93938 1.06995 1.01509 1.22067 1.02497 1.06830 0.90693 1.24818 0.84486 1.02584 1.01916 1.84416 1.36722 1.65426 1.21936 1.21852 0.89746 1.01271 0.99876 0.92274 0.91477 0.91727 0.90166 0.90552 0.91039 0.92029 0.82726 0.91642 0.82623 0.79981 0.75014 0.87785 0.88326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.29 71.98 0.67 -0.92 16 2 C -0.09 -1.43 3.54 -9.39 -0.03 -1.46 16 3 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 4 C -0.12 -2.27 6.32 31.71 0.20 -2.07 16 5 C -0.10 -3.02 4.82 30.52 0.15 -2.87 16 6 C -0.02 -0.45 6.15 -17.00 -0.10 -0.55 16 7 C -0.22 -7.57 10.06 23.40 0.24 -7.34 16 8 C 0.48 21.99 7.87 70.10 0.55 22.55 16 9 O -0.55 -27.18 13.37 19.72 0.26 -26.92 16 10 O -0.36 -18.15 6.70 -55.16 -0.37 -18.52 16 11 C 0.26 13.69 2.56 29.10 0.07 13.77 16 12 H 0.08 4.23 7.15 -2.38 -0.02 4.21 16 13 C -0.55 -34.01 9.52 25.60 0.24 -33.77 16 14 H 0.04 2.95 8.06 -2.91 -0.02 2.93 16 15 C 0.04 2.48 5.45 84.66 0.46 2.95 16 16 N -0.92 -58.52 13.96 21.45 0.30 -58.22 16 17 Si 0.95 48.16 22.88 68.60 1.57 49.73 16 18 H -0.26 -12.25 5.87 99.48 0.58 -11.67 16 19 H -0.22 -10.53 4.98 99.48 0.50 -10.03 16 20 H -0.30 -14.87 7.11 99.48 0.71 -14.16 16 21 C -0.01 -0.55 5.46 24.83 0.14 -0.41 16 22 C -0.22 -8.86 10.80 22.19 0.24 -8.62 16 23 C -0.20 -6.58 10.91 22.19 0.24 -6.34 16 24 C -0.07 -2.48 11.71 66.97 0.78 -1.69 16 25 O -0.19 -8.26 4.54 -1.15 -0.01 -8.26 16 26 C -0.09 -1.66 6.10 30.94 0.19 -1.47 16 27 H 0.06 0.67 8.08 -2.39 -0.02 0.65 16 28 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 30 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 31 H 0.08 1.39 8.04 -2.39 -0.02 1.37 16 32 H 0.07 2.28 7.66 -2.39 -0.02 2.26 16 33 H 0.06 2.13 7.69 -2.39 -0.02 2.11 16 34 H 0.16 4.59 8.06 -2.91 -0.02 4.57 16 35 H 0.27 16.23 8.31 -92.71 -0.77 15.46 16 36 H 0.16 5.58 8.06 -2.91 -0.02 5.56 16 37 H 0.18 4.27 8.06 -2.91 -0.02 4.25 16 38 H 0.23 5.46 8.06 -2.91 -0.02 5.43 16 39 H 0.10 1.70 8.01 -2.39 -0.02 1.69 16 40 H 0.10 1.48 8.14 -2.38 -0.02 1.46 16 Total: -1.00 -76.96 325.91 6.48 -70.48 By element: Atomic # 1 Polarization: 19.28 SS G_CDS: 0.69 Total: 19.97 kcal Atomic # 6 Polarization: -32.29 SS G_CDS: 4.04 Total: -28.26 kcal Atomic # 7 Polarization: -58.52 SS G_CDS: 0.30 Total: -58.22 kcal Atomic # 8 Polarization: -53.59 SS G_CDS: -0.11 Total: -53.70 kcal Atomic # 14 Polarization: 48.16 SS G_CDS: 1.57 Total: 49.73 kcal Total: -76.96 6.48 -70.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347949047.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.715 kcal (2) G-P(sol) polarization free energy of solvation -76.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds