Wall clock time and date at job start Tue Mar 31 2020 05:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30992 * 1 3 3 C 1.50706 * 119.99853 * 2 1 4 4 C 1.52994 * 109.47420 * 124.18133 * 3 2 1 5 5 C 1.53001 * 109.47289 * 173.88740 * 4 3 2 6 6 C 1.50699 * 109.47232 * 294.51382 * 5 4 3 7 7 C 1.30998 * 119.99946 * 125.00194 * 6 5 4 8 8 C 1.50696 * 109.47596 * 293.89301 * 4 3 2 9 9 O 1.20831 * 120.00195 * 240.00300 * 8 4 3 10 10 O 1.34224 * 120.00124 * 60.26706 * 8 4 3 11 11 C 1.45200 * 117.00181 * 179.72709 * 10 8 4 12 12 H 1.08999 * 109.46931 * 30.00563 * 11 10 8 13 13 C 1.50703 * 109.46983 * 150.00301 * 11 10 8 14 14 H 1.08001 * 120.00445 * 63.23666 * 13 11 10 15 15 C 1.37878 * 120.00066 * 243.23818 * 13 11 10 16 16 N 1.31512 * 120.00164 * 178.85311 * 15 13 11 17 17 Si 1.86799 * 119.99980 * 358.85249 * 15 13 11 18 18 H 1.48505 * 109.47112 * 84.46532 * 17 15 13 19 19 H 1.48494 * 109.47520 * 204.46553 * 17 15 13 20 20 H 1.48500 * 109.47130 * 324.46860 * 17 15 13 21 21 C 1.50696 * 109.47240 * 270.00116 * 11 10 8 22 22 C 1.34522 * 125.78884 * 144.38754 * 21 11 10 23 23 C 1.41377 * 106.83685 * 180.02562 * 22 21 11 24 24 C 1.34507 * 106.84761 * 359.97438 * 23 22 21 25 25 O 1.34303 * 125.79104 * 324.08129 * 21 11 10 26 26 H 1.08002 * 120.00352 * 359.97438 * 1 2 3 27 27 H 1.08003 * 120.00052 * 180.02562 * 1 2 3 28 28 H 1.07989 * 120.00674 * 180.02562 * 2 1 3 29 29 H 1.09006 * 109.46953 * 4.18737 * 3 2 1 30 30 H 1.09003 * 109.47022 * 244.18516 * 3 2 1 31 31 H 1.09009 * 109.46872 * 53.88923 * 4 3 2 32 32 H 1.08990 * 109.46976 * 54.51628 * 5 4 3 33 33 H 1.09007 * 109.46778 * 174.51531 * 5 4 3 34 34 H 1.08002 * 120.00254 * 305.00238 * 6 5 4 35 35 H 1.08004 * 120.00323 * 180.02562 * 7 6 5 36 36 H 1.07997 * 119.99919 * 359.97438 * 7 6 5 37 37 H 0.97006 * 119.99874 * 179.97438 * 16 15 13 38 38 H 1.08000 * 126.57616 * 0.03213 * 22 21 11 39 39 H 1.08002 * 126.57468 * 179.97438 * 23 22 21 40 40 H 1.08001 * 125.79110 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0202 1.3417 1.1933 5 6 3.8927 2.5958 1.1092 6 6 4.7853 2.5065 -0.1017 7 6 4.7782 3.4666 -0.9929 8 6 2.2259 1.3673 2.4736 9 8 2.3452 2.2936 3.2403 10 8 1.3898 0.3585 2.7650 11 6 0.6616 0.4468 4.0181 12 1 0.4924 1.4944 4.2669 13 6 -0.6637 -0.2570 3.8795 14 1 -0.6936 -1.3190 3.6855 15 6 -1.8383 0.4549 4.0004 16 7 -2.9946 -0.1550 3.8571 17 14 -1.7872 2.2857 4.3678 18 1 -1.6136 3.0402 3.1005 19 1 -3.0577 2.6958 5.0179 20 1 -0.6496 2.5766 5.2768 21 6 1.4650 -0.2062 5.1131 22 6 1.5271 0.2017 6.3934 23 6 2.3908 -0.6925 7.0667 24 6 2.8044 -1.5936 6.1578 25 8 2.2360 -1.2976 4.9775 26 1 -0.5401 0.9353 0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 1.8500 -0.9352 -0.0004 29 1 1.3574 2.1323 0.0750 30 1 2.6326 1.3961 -0.9251 31 1 3.6551 0.4557 1.1772 32 1 3.2559 3.4765 1.0271 33 1 4.5055 2.6729 2.0074 34 1 5.4309 1.6510 -0.2348 35 1 5.4176 3.4025 -1.8609 36 1 4.1324 4.3219 -0.8600 37 1 -3.8210 0.3459 3.9425 38 1 1.0153 1.0495 6.8243 39 1 2.6658 -0.6584 8.1106 40 1 3.4760 -2.4182 6.3463 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347949349.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:16 Heat of formation + Delta-G solvation = -40.734519 kcal Electronic energy + Delta-G solvation = -23661.490771 eV Core-core repulsion = 20216.161246 eV Total energy + Delta-G solvation = -3445.329525 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.77364 -39.81041 -36.76406 -35.54336 -33.99970 -33.14262 -32.22797 -30.94572 -30.29594 -27.09887 -26.19595 -24.08931 -22.49858 -21.06933 -20.24314 -19.69139 -19.36491 -19.29480 -17.50195 -17.00206 -16.50868 -15.95540 -15.42985 -15.13030 -14.97883 -14.53511 -14.41423 -13.62946 -13.43493 -13.17824 -12.89641 -12.67720 -12.34979 -12.20527 -12.05814 -11.99265 -11.63943 -11.43267 -11.36613 -11.11432 -11.02070 -10.82599 -10.46488 -10.10095 -9.83181 -9.63127 -9.58834 -9.40744 -9.19404 -8.99117 -8.66332 -7.68308 -6.49707 -4.56446 2.20426 2.48820 2.83562 3.01504 3.07876 3.16311 3.21930 3.32100 3.59841 3.82062 4.08090 4.81397 4.86580 5.02386 5.07763 5.20081 5.34964 5.47362 5.58736 5.64928 5.68779 5.70389 5.79487 5.88170 5.96193 6.05556 6.14629 6.18409 6.27744 6.50218 6.54730 6.56913 6.60887 6.72380 6.80696 7.09081 7.18964 7.19336 7.35709 7.43733 7.92302 8.07285 8.60714 8.68478 9.07354 10.59415 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.012655 B = 0.006729 C = 0.005403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2211.948905 B = 4160.049509 C = 5180.972388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.165 4.165 3 C -0.077 4.077 4 C -0.077 4.077 5 C -0.082 4.082 6 C -0.144 4.144 7 C -0.198 4.198 8 C 0.453 3.547 9 O -0.530 6.530 10 O -0.336 6.336 11 C 0.246 3.754 12 H 0.083 0.917 13 C -0.499 4.499 14 H 0.090 0.910 15 C 0.092 3.908 16 N -0.859 5.859 17 Si 0.864 3.136 18 H -0.266 1.266 19 H -0.276 1.276 20 H -0.257 1.257 21 C 0.033 3.967 22 C -0.235 4.235 23 C -0.208 4.208 24 C -0.076 4.076 25 O -0.169 6.169 26 H 0.088 0.912 27 H 0.098 0.902 28 H 0.106 0.894 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.104 0.896 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.110 0.890 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.275 0.725 38 H 0.138 0.862 39 H 0.139 0.861 40 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.633 2.565 -5.648 13.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.183 4.183 3 C -0.114 4.114 4 C -0.096 4.096 5 C -0.119 4.119 6 C -0.162 4.162 7 C -0.234 4.234 8 C 0.296 3.704 9 O -0.421 6.421 10 O -0.251 6.251 11 C 0.194 3.806 12 H 0.101 0.899 13 C -0.534 4.534 14 H 0.108 0.892 15 C -0.116 4.116 16 N -0.493 5.493 17 Si 0.690 3.310 18 H -0.191 1.191 19 H -0.201 1.201 20 H -0.182 1.182 21 C -0.018 4.018 22 C -0.255 4.255 23 C -0.228 4.228 24 C -0.143 4.143 25 O -0.065 6.065 26 H 0.106 0.894 27 H 0.116 0.884 28 H 0.124 0.876 29 H 0.085 0.915 30 H 0.099 0.901 31 H 0.122 0.878 32 H 0.093 0.907 33 H 0.101 0.899 34 H 0.127 0.873 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.085 0.915 38 H 0.156 0.844 39 H 0.157 0.843 40 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 11.437 2.657 -5.656 13.033 hybrid contribution -0.135 0.919 0.817 1.237 sum 11.302 3.576 -4.839 12.804 Atomic orbital electron populations 1.23681 0.95705 1.01691 0.97918 1.22553 0.96028 0.97161 1.02605 1.20676 0.97453 0.96942 0.96364 1.21061 0.96401 1.00564 0.91588 1.20661 0.96833 0.97185 0.97212 1.22928 0.98578 0.98996 0.95746 1.23832 1.01955 0.98974 0.98679 1.23612 0.78409 0.81045 0.87326 1.90576 1.64574 1.36154 1.50840 1.87047 1.50848 1.44426 1.42785 1.19580 0.87812 0.96785 0.76412 0.89934 1.20669 0.85599 0.97448 1.49732 0.89213 1.25052 0.95103 0.98535 0.92909 1.69842 0.97722 1.37086 1.44682 0.87006 0.78530 0.85173 0.80317 1.19076 1.20107 1.18183 1.23668 0.93204 0.86804 0.98132 1.21335 1.06073 1.04311 0.93747 1.21642 1.02774 0.98141 1.00193 1.23791 1.03623 1.03024 0.83892 1.84075 1.49158 1.39572 1.33653 0.89365 0.88411 0.87558 0.91476 0.90147 0.87773 0.90678 0.89931 0.87252 0.88604 0.88592 0.91472 0.84364 0.84332 0.79116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 14.14 29.02 0.41 -2.23 16 2 C -0.17 -2.60 7.87 -36.02 -0.28 -2.89 16 3 C -0.08 -1.10 5.02 -27.88 -0.14 -1.24 16 4 C -0.08 -1.17 2.29 -91.78 -0.21 -1.38 16 5 C -0.08 -1.09 4.48 -27.88 -0.13 -1.22 16 6 C -0.14 -1.53 8.43 -36.03 -0.30 -1.83 16 7 C -0.20 -1.90 14.32 29.02 0.42 -1.48 16 8 C 0.45 9.33 7.20 36.00 0.26 9.59 16 9 O -0.53 -12.15 15.13 -18.75 -0.28 -12.44 16 10 O -0.34 -7.74 8.11 -41.91 -0.34 -8.08 16 11 C 0.25 6.20 2.37 -29.04 -0.07 6.13 16 12 H 0.08 2.15 3.56 -51.93 -0.19 1.96 16 13 C -0.50 -13.74 9.23 -34.44 -0.32 -14.06 16 14 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 15 C 0.09 2.52 5.47 -17.82 -0.10 2.43 16 16 N -0.86 -24.28 13.96 55.43 0.77 -23.50 16 17 Si 0.86 20.74 27.17 -169.99 -4.62 16.12 16 18 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 19 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 20 H -0.26 -6.12 6.48 56.52 0.37 -5.75 16 21 C 0.03 0.80 6.17 -35.62 -0.22 0.58 16 22 C -0.24 -5.19 10.81 -39.70 -0.43 -5.61 16 23 C -0.21 -3.85 10.91 -39.71 -0.43 -4.29 16 24 C -0.08 -1.37 12.09 29.41 0.36 -1.01 16 25 O -0.17 -3.77 10.64 2.51 0.03 -3.74 16 26 H 0.09 1.54 7.84 -52.49 -0.41 1.13 16 27 H 0.10 1.69 8.06 -52.48 -0.42 1.27 16 28 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 29 H 0.07 1.01 7.79 -51.93 -0.40 0.61 16 30 H 0.08 0.94 7.22 -51.93 -0.37 0.57 16 31 H 0.10 1.42 8.14 -51.92 -0.42 1.00 16 32 H 0.07 1.04 7.79 -51.93 -0.40 0.64 16 33 H 0.08 1.16 7.94 -51.92 -0.41 0.75 16 34 H 0.11 1.01 8.06 -52.49 -0.42 0.59 16 35 H 0.10 0.77 8.06 -52.48 -0.42 0.34 16 36 H 0.10 0.92 7.84 -52.49 -0.41 0.51 16 37 H 0.28 7.20 8.31 -40.82 -0.34 6.86 16 38 H 0.14 2.93 8.06 -52.49 -0.42 2.50 16 39 H 0.14 2.07 8.06 -52.49 -0.42 1.65 16 40 H 0.19 2.48 8.06 -52.49 -0.42 2.06 16 LS Contribution 347.39 15.07 5.24 5.24 Total: -1.00 -30.70 347.39 -5.97 -36.67 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -5.58 Total: 8.25 kcal Atomic # 6 Polarization: -17.32 SS G_CDS: -1.19 Total: -18.51 kcal Atomic # 7 Polarization: -24.28 SS G_CDS: 0.77 Total: -23.50 kcal Atomic # 8 Polarization: -23.66 SS G_CDS: -0.60 Total: -24.26 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.62 Total: 16.12 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.70 -5.97 -36.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347949349.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.062 kcal (2) G-P(sol) polarization free energy of solvation -30.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds