Wall clock time and date at job start Tue Mar 31 2020 05:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30992 * 1 3 3 C 1.50706 * 119.99853 * 2 1 4 4 C 1.52994 * 109.47420 * 124.18133 * 3 2 1 5 5 C 1.53001 * 109.47289 * 173.88740 * 4 3 2 6 6 C 1.50699 * 109.47232 * 294.51382 * 5 4 3 7 7 C 1.30998 * 119.99946 * 125.00194 * 6 5 4 8 8 C 1.50696 * 109.47596 * 293.89301 * 4 3 2 9 9 O 1.20831 * 120.00195 * 240.00300 * 8 4 3 10 10 O 1.34224 * 120.00124 * 60.26706 * 8 4 3 11 11 C 1.45200 * 117.00181 * 179.72709 * 10 8 4 12 12 H 1.08999 * 109.46931 * 30.00563 * 11 10 8 13 13 C 1.50703 * 109.46983 * 150.00301 * 11 10 8 14 14 H 1.08001 * 120.00445 * 63.23666 * 13 11 10 15 15 C 1.37878 * 120.00066 * 243.23818 * 13 11 10 16 16 N 1.31512 * 120.00164 * 178.85311 * 15 13 11 17 17 Si 1.86799 * 119.99980 * 358.85249 * 15 13 11 18 18 H 1.48505 * 109.47112 * 84.46532 * 17 15 13 19 19 H 1.48494 * 109.47520 * 204.46553 * 17 15 13 20 20 H 1.48500 * 109.47130 * 324.46860 * 17 15 13 21 21 C 1.50696 * 109.47240 * 270.00116 * 11 10 8 22 22 C 1.34522 * 125.78884 * 144.38754 * 21 11 10 23 23 C 1.41377 * 106.83685 * 180.02562 * 22 21 11 24 24 C 1.34507 * 106.84761 * 359.97438 * 23 22 21 25 25 O 1.34303 * 125.79104 * 324.08129 * 21 11 10 26 26 H 1.08002 * 120.00352 * 359.97438 * 1 2 3 27 27 H 1.08003 * 120.00052 * 180.02562 * 1 2 3 28 28 H 1.07989 * 120.00674 * 180.02562 * 2 1 3 29 29 H 1.09006 * 109.46953 * 4.18737 * 3 2 1 30 30 H 1.09003 * 109.47022 * 244.18516 * 3 2 1 31 31 H 1.09009 * 109.46872 * 53.88923 * 4 3 2 32 32 H 1.08990 * 109.46976 * 54.51628 * 5 4 3 33 33 H 1.09007 * 109.46778 * 174.51531 * 5 4 3 34 34 H 1.08002 * 120.00254 * 305.00238 * 6 5 4 35 35 H 1.08004 * 120.00323 * 180.02562 * 7 6 5 36 36 H 1.07997 * 119.99919 * 359.97438 * 7 6 5 37 37 H 0.97006 * 119.99874 * 179.97438 * 16 15 13 38 38 H 1.08000 * 126.57616 * 0.03213 * 22 21 11 39 39 H 1.08002 * 126.57468 * 179.97438 * 23 22 21 40 40 H 1.08001 * 125.79110 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0202 1.3417 1.1933 5 6 3.8927 2.5958 1.1092 6 6 4.7853 2.5065 -0.1017 7 6 4.7782 3.4666 -0.9929 8 6 2.2259 1.3673 2.4736 9 8 2.3452 2.2936 3.2403 10 8 1.3898 0.3585 2.7650 11 6 0.6616 0.4468 4.0181 12 1 0.4924 1.4944 4.2669 13 6 -0.6637 -0.2570 3.8795 14 1 -0.6936 -1.3190 3.6855 15 6 -1.8383 0.4549 4.0004 16 7 -2.9946 -0.1550 3.8571 17 14 -1.7872 2.2857 4.3678 18 1 -1.6136 3.0402 3.1005 19 1 -3.0577 2.6958 5.0179 20 1 -0.6496 2.5766 5.2768 21 6 1.4650 -0.2062 5.1131 22 6 1.5271 0.2017 6.3934 23 6 2.3908 -0.6925 7.0667 24 6 2.8044 -1.5936 6.1578 25 8 2.2360 -1.2976 4.9775 26 1 -0.5401 0.9353 0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 1.8500 -0.9352 -0.0004 29 1 1.3574 2.1323 0.0750 30 1 2.6326 1.3961 -0.9251 31 1 3.6551 0.4557 1.1772 32 1 3.2559 3.4765 1.0271 33 1 4.5055 2.6729 2.0074 34 1 5.4309 1.6510 -0.2348 35 1 5.4176 3.4025 -1.8609 36 1 4.1324 4.3219 -0.8600 37 1 -3.8210 0.3459 3.9425 38 1 1.0153 1.0495 6.8243 39 1 2.6658 -0.6584 8.1106 40 1 3.4760 -2.4182 6.3463 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347949349.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:15 Heat of formation + Delta-G solvation = -57.025574 kcal Electronic energy + Delta-G solvation = -23662.197205 eV Core-core repulsion = 20216.161246 eV Total energy + Delta-G solvation = -3446.035959 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.40423 -41.46303 -38.14971 -37.18847 -35.27937 -34.97535 -33.88832 -32.44213 -31.75305 -28.89346 -27.32364 -25.69415 -24.18530 -22.65734 -21.69167 -21.01406 -20.73954 -20.52757 -19.46679 -18.66480 -18.19034 -17.62442 -16.88996 -16.77217 -16.38006 -16.08143 -15.65102 -15.11666 -14.91173 -14.82737 -14.33514 -14.11071 -13.80614 -13.73400 -13.62475 -13.39403 -13.33825 -13.15316 -12.98426 -12.58787 -12.07534 -12.00600 -11.89212 -11.74826 -11.66067 -11.59085 -11.30579 -11.06435 -10.78995 -10.32156 -9.91971 -9.32519 -8.59857 -6.71507 0.85528 1.17202 1.19594 1.25954 1.28670 1.40074 1.61249 1.72787 1.97779 2.07335 2.25087 2.90560 3.63221 3.72538 3.89791 4.06310 4.14618 4.16576 4.20903 4.28177 4.34308 4.43146 4.48686 4.50536 4.74321 4.84611 4.92346 4.97662 5.01741 5.05503 5.06819 5.15955 5.23179 5.24413 5.62822 5.69639 5.78767 5.86122 5.94673 6.03038 6.03326 6.30913 6.40014 6.89660 6.98757 8.54115 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.012655 B = 0.006729 C = 0.005403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2211.948905 B = 4160.049509 C = 5180.972388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.152 4.152 3 C -0.072 4.072 4 C -0.067 4.067 5 C -0.075 4.075 6 C -0.154 4.154 7 C -0.185 4.185 8 C 0.443 3.557 9 O -0.556 6.556 10 O -0.344 6.344 11 C 0.254 3.746 12 H 0.071 0.929 13 C -0.509 4.509 14 H 0.049 0.951 15 C 0.054 3.946 16 N -0.899 5.899 17 Si 0.914 3.086 18 H -0.263 1.263 19 H -0.257 1.257 20 H -0.257 1.257 21 C -0.012 4.012 22 C -0.242 4.242 23 C -0.214 4.214 24 C -0.059 4.059 25 O -0.189 6.189 26 H 0.079 0.921 27 H 0.088 0.912 28 H 0.120 0.880 29 H 0.055 0.945 30 H 0.118 0.882 31 H 0.128 0.872 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.129 0.871 35 H 0.118 0.882 36 H 0.092 0.908 37 H 0.281 0.719 38 H 0.138 0.862 39 H 0.179 0.821 40 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.482 3.004 -5.847 15.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.169 4.169 3 C -0.109 4.109 4 C -0.086 4.086 5 C -0.113 4.113 6 C -0.172 4.172 7 C -0.222 4.222 8 C 0.289 3.711 9 O -0.448 6.448 10 O -0.259 6.259 11 C 0.201 3.799 12 H 0.088 0.912 13 C -0.546 4.546 14 H 0.068 0.932 15 C -0.151 4.151 16 N -0.535 5.535 17 Si 0.737 3.263 18 H -0.188 1.188 19 H -0.181 1.181 20 H -0.182 1.182 21 C -0.063 4.063 22 C -0.262 4.262 23 C -0.233 4.233 24 C -0.125 4.125 25 O -0.085 6.085 26 H 0.097 0.903 27 H 0.106 0.894 28 H 0.138 0.862 29 H 0.074 0.926 30 H 0.136 0.864 31 H 0.145 0.855 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.147 0.853 35 H 0.136 0.864 36 H 0.111 0.889 37 H 0.091 0.909 38 H 0.156 0.844 39 H 0.196 0.804 40 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 14.288 3.099 -5.863 15.752 hybrid contribution -0.855 0.721 0.899 1.435 sum 13.433 3.820 -4.963 14.821 Atomic orbital electron populations 1.23638 0.96637 1.00922 1.00767 1.22826 0.95550 0.98605 0.99965 1.20715 0.97253 0.95485 0.97480 1.21213 0.96153 1.02775 0.88464 1.20594 0.96622 0.95535 0.98521 1.22834 0.99071 1.00540 0.94767 1.24044 1.01269 0.98127 0.98738 1.24739 0.77837 0.79760 0.88802 1.90552 1.65289 1.36857 1.52148 1.86957 1.51581 1.45533 1.41860 1.19198 0.87580 0.95839 0.77303 0.91174 1.20602 0.87589 0.95792 1.50569 0.93248 1.25643 0.94596 1.02198 0.92651 1.69919 0.98407 1.38755 1.46407 0.86232 0.79178 0.80616 0.80323 1.18765 1.18130 1.18213 1.23394 0.95849 0.88692 0.98385 1.21682 1.06154 1.04751 0.93595 1.22059 1.01897 0.97150 1.02146 1.24912 1.02214 1.03343 0.82058 1.84034 1.49476 1.39124 1.35890 0.90279 0.89391 0.86193 0.92597 0.86377 0.85467 0.91744 0.91018 0.85315 0.86378 0.88925 0.90914 0.84410 0.80411 0.73826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.54 14.14 67.79 0.96 -5.59 16 2 C -0.15 -4.68 7.87 25.66 0.20 -4.47 16 3 C -0.07 -1.93 5.02 29.85 0.15 -1.78 16 4 C -0.07 -1.93 2.29 -11.54 -0.03 -1.96 16 5 C -0.08 -1.88 4.48 29.85 0.13 -1.74 16 6 C -0.15 -2.74 8.43 25.65 0.22 -2.52 16 7 C -0.19 -2.89 14.32 67.78 0.97 -1.92 16 8 C 0.44 18.31 7.20 71.23 0.51 18.82 16 9 O -0.56 -25.75 15.13 21.95 0.33 -25.42 16 10 O -0.34 -16.24 8.11 -48.82 -0.40 -16.64 16 11 C 0.25 13.20 2.37 29.10 0.07 13.27 16 12 H 0.07 3.77 3.56 -2.39 -0.01 3.76 16 13 C -0.51 -29.53 9.23 25.60 0.24 -29.29 16 14 H 0.05 3.18 8.06 -2.91 -0.02 3.15 16 15 C 0.05 3.06 5.47 84.66 0.46 3.52 16 16 N -0.90 -52.84 13.96 21.45 0.30 -52.54 16 17 Si 0.91 43.74 27.17 68.60 1.86 45.60 16 18 H -0.26 -12.34 7.11 99.48 0.71 -11.64 16 19 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 20 H -0.26 -12.22 6.48 99.48 0.64 -11.58 16 21 C -0.01 -0.60 6.17 24.83 0.15 -0.44 16 22 C -0.24 -10.59 10.81 22.19 0.24 -10.35 16 23 C -0.21 -7.34 10.91 22.19 0.24 -7.10 16 24 C -0.06 -1.95 12.09 66.97 0.81 -1.14 16 25 O -0.19 -8.31 10.64 0.52 0.01 -8.31 16 26 H 0.08 2.92 7.84 -2.91 -0.02 2.89 16 27 H 0.09 3.25 8.06 -2.91 -0.02 3.22 16 28 H 0.12 3.37 8.06 -2.92 -0.02 3.34 16 29 H 0.06 1.64 7.79 -2.38 -0.02 1.62 16 30 H 0.12 2.34 7.22 -2.39 -0.02 2.32 16 31 H 0.13 3.13 8.14 -2.38 -0.02 3.11 16 32 H 0.06 1.72 7.79 -2.39 -0.02 1.70 16 33 H 0.07 1.93 7.94 -2.38 -0.02 1.91 16 34 H 0.13 1.83 8.06 -2.91 -0.02 1.80 16 35 H 0.12 1.37 8.06 -2.91 -0.02 1.34 16 36 H 0.09 1.52 7.84 -2.91 -0.02 1.49 16 37 H 0.28 15.18 8.31 -92.70 -0.77 14.41 16 38 H 0.14 5.86 8.06 -2.91 -0.02 5.84 16 39 H 0.18 4.57 8.06 -2.91 -0.02 4.55 16 40 H 0.25 5.10 8.06 -2.91 -0.02 5.08 16 Total: -1.00 -70.76 347.39 8.39 -62.37 By element: Atomic # 1 Polarization: 26.66 SS G_CDS: 0.95 Total: 27.62 kcal Atomic # 6 Polarization: -38.02 SS G_CDS: 5.33 Total: -32.69 kcal Atomic # 7 Polarization: -52.84 SS G_CDS: 0.30 Total: -52.54 kcal Atomic # 8 Polarization: -50.31 SS G_CDS: -0.06 Total: -50.37 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 1.86 Total: 45.60 kcal Total: -70.76 8.39 -62.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347949349.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.345 kcal (2) G-P(sol) polarization free energy of solvation -70.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds