Wall clock time and date at job start Tue Mar 31 2020 05:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50700 * 119.99671 * 2 1 4 4 C 1.52999 * 109.47186 * 124.99660 * 3 2 1 5 5 C 1.52997 * 109.47033 * 65.00088 * 4 3 2 6 6 C 1.50705 * 109.47031 * 185.00285 * 5 4 3 7 7 C 1.30996 * 120.00290 * 124.99805 * 6 5 4 8 8 C 1.50702 * 109.47227 * 184.99939 * 4 3 2 9 9 O 1.20825 * 119.99847 * 0.02562 * 8 4 3 10 10 O 1.34227 * 120.00042 * 179.97438 * 8 4 3 11 11 C 1.45198 * 116.99867 * 180.02562 * 10 8 4 12 12 H 1.08999 * 109.47001 * 330.00064 * 11 10 8 13 13 C 1.50703 * 109.47009 * 210.00372 * 11 10 8 14 14 H 1.08000 * 119.99884 * 273.49750 * 13 11 10 15 15 C 1.37873 * 120.00247 * 93.76876 * 13 11 10 16 16 N 1.31518 * 120.00529 * 181.34848 * 15 13 11 17 17 Si 1.86805 * 119.99623 * 1.34620 * 15 13 11 18 18 H 1.48502 * 109.46971 * 84.88667 * 17 15 13 19 19 H 1.48507 * 109.46917 * 204.88253 * 17 15 13 20 20 H 1.48496 * 109.47422 * 324.88129 * 17 15 13 21 21 C 1.50697 * 109.47261 * 90.00656 * 11 10 8 22 22 C 1.34516 * 125.78818 * 216.36369 * 21 11 10 23 23 C 1.41386 * 106.83972 * 179.88511 * 22 21 11 24 24 C 1.34507 * 106.83941 * 0.36962 * 23 22 21 25 25 O 1.34299 * 125.79244 * 36.66327 * 21 11 10 26 26 H 1.07993 * 120.00475 * 0.02562 * 1 2 3 27 27 H 1.08006 * 119.99566 * 179.97438 * 1 2 3 28 28 H 1.07993 * 120.00475 * 179.97438 * 2 1 3 29 29 H 1.09005 * 109.47011 * 4.99945 * 3 2 1 30 30 H 1.09000 * 109.47092 * 244.99695 * 3 2 1 31 31 H 1.09002 * 109.47256 * 304.99688 * 4 3 2 32 32 H 1.08997 * 109.46884 * 304.99561 * 5 4 3 33 33 H 1.08993 * 109.47138 * 65.00220 * 5 4 3 34 34 H 1.08002 * 119.99870 * 304.99394 * 6 5 4 35 35 H 1.08001 * 120.00260 * 179.97438 * 7 6 5 36 36 H 1.08004 * 119.99708 * 0.02562 * 7 6 5 37 37 H 0.96994 * 120.00140 * 179.97438 * 16 15 13 38 38 H 1.08004 * 126.58213 * 0.02562 * 22 21 11 39 39 H 1.08000 * 126.57391 * 180.16706 * 23 22 21 40 40 H 1.08001 * 125.78505 * 179.74384 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0349 1.3332 1.1817 5 6 4.0998 0.2512 0.9922 6 6 4.9829 0.1964 2.2122 7 6 5.1436 -0.9340 2.8543 8 6 3.6989 2.6842 1.2542 9 8 3.4230 3.5371 0.4441 10 8 4.5960 2.9402 2.2192 11 6 5.1950 4.2628 2.2283 12 1 5.2414 4.6476 1.2096 13 6 6.5879 4.1795 2.7977 14 1 6.7395 4.2420 3.8652 15 6 7.6691 4.0290 1.9556 16 7 8.8821 3.9297 2.4539 17 14 7.4110 3.9663 0.1065 18 1 7.3605 5.3487 -0.4334 19 1 8.5346 3.2288 -0.5254 20 1 6.1330 3.2714 -0.1917 21 6 4.3600 5.1867 3.0769 22 6 4.1314 6.4892 2.8308 23 6 3.3010 6.9633 3.8722 24 6 3.0785 5.9241 4.6968 25 8 3.7223 4.8507 4.2101 26 1 -0.5400 0.9352 -0.0004 27 1 -0.5400 -0.9354 -0.0004 28 1 1.8501 -0.9352 0.0004 29 1 1.3584 2.1317 0.0896 30 1 2.6213 1.4026 -0.9314 31 1 2.4882 1.1471 2.1061 32 1 3.6151 -0.7148 0.8510 33 1 4.7045 0.4859 0.1162 34 1 5.4834 1.0891 2.5570 35 1 5.7768 -0.9734 3.7283 36 1 4.6434 -1.8269 2.5092 37 1 9.6427 3.8235 1.8614 38 1 4.5079 7.0624 1.9964 39 1 2.9212 7.9679 3.9857 40 1 2.4834 5.9490 5.5977 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347949350.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:18 Heat of formation + Delta-G solvation = -42.822342 kcal Electronic energy + Delta-G solvation = -23606.126301 eV Core-core repulsion = 20160.706241 eV Total energy + Delta-G solvation = -3445.420060 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.83965 -39.84839 -36.77595 -35.59206 -34.06539 -33.12727 -32.29446 -31.05513 -30.36092 -27.15876 -26.14325 -24.16821 -22.63562 -21.11631 -20.26570 -19.85746 -19.43388 -19.02833 -17.45981 -17.14808 -16.56164 -16.21726 -15.38499 -15.16189 -15.03355 -14.69837 -14.26730 -13.64283 -13.40564 -13.16354 -12.91807 -12.69741 -12.46779 -12.29648 -12.12493 -12.08393 -11.75815 -11.43476 -11.25417 -11.10461 -11.06054 -10.75181 -10.46124 -10.17552 -9.77237 -9.76396 -9.61062 -9.37941 -9.24844 -8.99243 -8.95644 -7.74844 -6.52910 -4.62012 2.19781 2.43321 2.66000 2.97178 3.05638 3.17513 3.23558 3.27375 3.58267 3.77439 4.07970 4.78793 4.88168 4.97414 5.07364 5.22337 5.28744 5.39180 5.51113 5.61325 5.64924 5.67195 5.75467 5.87843 5.89938 5.97452 6.10318 6.19184 6.24431 6.43085 6.43749 6.55459 6.56951 6.71883 6.74255 7.05041 7.12874 7.18026 7.22364 7.45704 7.87758 8.03991 8.58227 8.64764 9.03644 10.55647 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.011497 B = 0.007075 C = 0.005464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2434.827282 B = 3956.890112 C = 5123.073628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.148 4.148 3 C -0.081 4.081 4 C -0.078 4.078 5 C -0.084 4.084 6 C -0.148 4.148 7 C -0.208 4.208 8 C 0.453 3.547 9 O -0.527 6.527 10 O -0.346 6.346 11 C 0.251 3.749 12 H 0.078 0.922 13 C -0.506 4.506 14 H 0.090 0.910 15 C 0.093 3.907 16 N -0.856 5.856 17 Si 0.867 3.133 18 H -0.266 1.266 19 H -0.277 1.277 20 H -0.257 1.257 21 C 0.032 3.968 22 C -0.230 4.230 23 C -0.210 4.210 24 C -0.072 4.072 25 O -0.168 6.168 26 H 0.096 0.904 27 H 0.096 0.904 28 H 0.111 0.889 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.105 0.895 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.142 0.858 35 H 0.096 0.904 36 H 0.086 0.914 37 H 0.276 0.724 38 H 0.141 0.859 39 H 0.140 0.860 40 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.704 -5.596 -2.025 13.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.165 4.165 3 C -0.118 4.118 4 C -0.097 4.097 5 C -0.122 4.122 6 C -0.166 4.166 7 C -0.244 4.244 8 C 0.297 3.703 9 O -0.418 6.418 10 O -0.262 6.262 11 C 0.200 3.800 12 H 0.096 0.904 13 C -0.541 4.541 14 H 0.108 0.892 15 C -0.116 4.116 16 N -0.490 5.490 17 Si 0.692 3.308 18 H -0.191 1.191 19 H -0.202 1.202 20 H -0.181 1.181 21 C -0.019 4.019 22 C -0.249 4.249 23 C -0.229 4.229 24 C -0.139 4.139 25 O -0.063 6.063 26 H 0.114 0.886 27 H 0.114 0.886 28 H 0.129 0.871 29 H 0.096 0.904 30 H 0.099 0.901 31 H 0.123 0.877 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.160 0.840 35 H 0.115 0.885 36 H 0.104 0.896 37 H 0.086 0.914 38 H 0.159 0.841 39 H 0.158 0.842 40 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -11.533 -5.613 -2.134 13.002 hybrid contribution -0.015 0.406 -0.902 0.989 sum -11.548 -5.207 -3.036 13.026 Atomic orbital electron populations 1.23851 0.95929 1.01749 1.01831 1.22986 0.95965 0.98348 0.99242 1.20643 0.97697 0.95607 0.97841 1.21073 0.96392 0.91150 1.01104 1.20760 0.95546 0.97817 0.98033 1.23510 0.97421 1.00298 0.95371 1.23708 1.02859 0.96854 1.01004 1.23571 0.77784 0.89428 0.79538 1.90561 1.61763 1.48466 1.40967 1.87128 1.50415 1.39471 1.49225 1.19545 0.89476 0.76898 0.94111 0.90426 1.20772 0.85405 1.51191 0.96718 0.89231 1.25093 0.94859 0.92233 0.99400 1.69854 0.98751 1.43866 1.36549 0.86957 0.79252 0.79848 0.84745 1.19076 1.20177 1.18106 1.23312 0.95687 0.96166 0.86731 1.21374 1.05617 0.94872 1.03019 1.21665 1.04101 0.99912 0.97257 1.23824 1.02799 0.85688 1.01628 1.84073 1.51421 1.36688 1.34131 0.88575 0.88578 0.87136 0.90408 0.90139 0.87727 0.90448 0.90697 0.84044 0.88534 0.89586 0.91400 0.84084 0.84225 0.79012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.97 14.32 29.01 0.42 -1.55 16 2 C -0.15 -1.63 9.03 -36.03 -0.33 -1.95 16 3 C -0.08 -1.11 4.48 -27.88 -0.12 -1.23 16 4 C -0.08 -1.22 2.30 -91.77 -0.21 -1.44 16 5 C -0.08 -1.24 5.02 -27.88 -0.14 -1.38 16 6 C -0.15 -2.47 8.90 -36.02 -0.32 -2.79 16 7 C -0.21 -2.98 14.32 29.02 0.42 -2.57 16 8 C 0.45 9.41 7.16 36.01 0.26 9.67 16 9 O -0.53 -12.03 15.14 -18.75 -0.28 -12.32 16 10 O -0.35 -7.97 7.15 -41.81 -0.30 -8.27 16 11 C 0.25 6.21 1.97 -29.04 -0.06 6.16 16 12 H 0.08 1.97 4.54 -51.93 -0.24 1.74 16 13 C -0.51 -13.80 9.23 -34.44 -0.32 -14.12 16 14 H 0.09 2.67 8.06 -52.49 -0.42 2.24 16 15 C 0.09 2.53 5.47 -17.82 -0.10 2.43 16 16 N -0.86 -24.10 13.96 55.43 0.77 -23.33 16 17 Si 0.87 20.58 26.90 -169.99 -4.57 16.00 16 18 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 19 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 20 H -0.26 -6.14 6.93 56.52 0.39 -5.74 16 21 C 0.03 0.75 6.17 -35.63 -0.22 0.53 16 22 C -0.23 -4.85 10.81 -39.70 -0.43 -5.28 16 23 C -0.21 -3.75 10.91 -39.70 -0.43 -4.18 16 24 C -0.07 -1.26 12.09 29.41 0.36 -0.91 16 25 O -0.17 -3.67 10.64 2.92 0.03 -3.64 16 26 H 0.10 0.95 7.84 -52.49 -0.41 0.54 16 27 H 0.10 0.80 8.06 -52.48 -0.42 0.38 16 28 H 0.11 1.07 6.86 -52.49 -0.36 0.71 16 29 H 0.08 1.12 7.61 -51.93 -0.39 0.72 16 30 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 32 H 0.08 0.91 6.19 -51.93 -0.32 0.58 16 33 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 34 H 0.14 2.87 5.88 -52.49 -0.31 2.56 16 35 H 0.10 1.37 8.06 -52.49 -0.42 0.95 16 36 H 0.09 1.04 7.84 -52.48 -0.41 0.63 16 37 H 0.28 7.19 8.31 -40.82 -0.34 6.85 16 38 H 0.14 2.79 8.06 -52.48 -0.42 2.37 16 39 H 0.14 2.00 8.06 -52.49 -0.42 1.58 16 40 H 0.19 2.42 8.06 -52.49 -0.42 2.00 16 LS Contribution 344.95 15.07 5.20 5.20 Total: -1.00 -30.24 344.95 -5.78 -36.02 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: -5.39 Total: 8.92 kcal Atomic # 6 Polarization: -17.36 SS G_CDS: -1.23 Total: -18.60 kcal Atomic # 7 Polarization: -24.10 SS G_CDS: 0.77 Total: -23.33 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: -0.55 Total: -24.22 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -4.57 Total: 16.00 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.24 -5.78 -36.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347949350.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.801 kcal (2) G-P(sol) polarization free energy of solvation -30.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds