Wall clock time and date at job start Tue Mar 31 2020 05:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50700 * 119.99671 * 2 1 4 4 C 1.52999 * 109.47186 * 124.99660 * 3 2 1 5 5 C 1.52997 * 109.47033 * 65.00088 * 4 3 2 6 6 C 1.50705 * 109.47031 * 185.00285 * 5 4 3 7 7 C 1.30996 * 120.00290 * 124.99805 * 6 5 4 8 8 C 1.50702 * 109.47227 * 184.99939 * 4 3 2 9 9 O 1.20825 * 119.99847 * 0.02562 * 8 4 3 10 10 O 1.34227 * 120.00042 * 179.97438 * 8 4 3 11 11 C 1.45198 * 116.99867 * 180.02562 * 10 8 4 12 12 H 1.08999 * 109.47001 * 330.00064 * 11 10 8 13 13 C 1.50703 * 109.47009 * 210.00372 * 11 10 8 14 14 H 1.08000 * 119.99884 * 273.49750 * 13 11 10 15 15 C 1.37873 * 120.00247 * 93.76876 * 13 11 10 16 16 N 1.31518 * 120.00529 * 181.34848 * 15 13 11 17 17 Si 1.86805 * 119.99623 * 1.34620 * 15 13 11 18 18 H 1.48502 * 109.46971 * 84.88667 * 17 15 13 19 19 H 1.48507 * 109.46917 * 204.88253 * 17 15 13 20 20 H 1.48496 * 109.47422 * 324.88129 * 17 15 13 21 21 C 1.50697 * 109.47261 * 90.00656 * 11 10 8 22 22 C 1.34516 * 125.78818 * 216.36369 * 21 11 10 23 23 C 1.41386 * 106.83972 * 179.88511 * 22 21 11 24 24 C 1.34507 * 106.83941 * 0.36962 * 23 22 21 25 25 O 1.34299 * 125.79244 * 36.66327 * 21 11 10 26 26 H 1.07993 * 120.00475 * 0.02562 * 1 2 3 27 27 H 1.08006 * 119.99566 * 179.97438 * 1 2 3 28 28 H 1.07993 * 120.00475 * 179.97438 * 2 1 3 29 29 H 1.09005 * 109.47011 * 4.99945 * 3 2 1 30 30 H 1.09000 * 109.47092 * 244.99695 * 3 2 1 31 31 H 1.09002 * 109.47256 * 304.99688 * 4 3 2 32 32 H 1.08997 * 109.46884 * 304.99561 * 5 4 3 33 33 H 1.08993 * 109.47138 * 65.00220 * 5 4 3 34 34 H 1.08002 * 119.99870 * 304.99394 * 6 5 4 35 35 H 1.08001 * 120.00260 * 179.97438 * 7 6 5 36 36 H 1.08004 * 119.99708 * 0.02562 * 7 6 5 37 37 H 0.96994 * 120.00140 * 179.97438 * 16 15 13 38 38 H 1.08004 * 126.58213 * 0.02562 * 22 21 11 39 39 H 1.08000 * 126.57391 * 180.16706 * 23 22 21 40 40 H 1.08001 * 125.78505 * 179.74384 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0349 1.3332 1.1817 5 6 4.0998 0.2512 0.9922 6 6 4.9829 0.1964 2.2122 7 6 5.1436 -0.9340 2.8543 8 6 3.6989 2.6842 1.2542 9 8 3.4230 3.5371 0.4441 10 8 4.5960 2.9402 2.2192 11 6 5.1950 4.2628 2.2283 12 1 5.2414 4.6476 1.2096 13 6 6.5879 4.1795 2.7977 14 1 6.7395 4.2420 3.8652 15 6 7.6691 4.0290 1.9556 16 7 8.8821 3.9297 2.4539 17 14 7.4110 3.9663 0.1065 18 1 7.3605 5.3487 -0.4334 19 1 8.5346 3.2288 -0.5254 20 1 6.1330 3.2714 -0.1917 21 6 4.3600 5.1867 3.0769 22 6 4.1314 6.4892 2.8308 23 6 3.3010 6.9633 3.8722 24 6 3.0785 5.9241 4.6968 25 8 3.7223 4.8507 4.2101 26 1 -0.5400 0.9352 -0.0004 27 1 -0.5400 -0.9354 -0.0004 28 1 1.8501 -0.9352 0.0004 29 1 1.3584 2.1317 0.0896 30 1 2.6213 1.4026 -0.9314 31 1 2.4882 1.1471 2.1061 32 1 3.6151 -0.7148 0.8510 33 1 4.7045 0.4859 0.1162 34 1 5.4834 1.0891 2.5570 35 1 5.7768 -0.9734 3.7283 36 1 4.6434 -1.8269 2.5092 37 1 9.6427 3.8235 1.8614 38 1 4.5079 7.0624 1.9964 39 1 2.9212 7.9679 3.9857 40 1 2.4834 5.9490 5.5977 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347949350.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:18 Heat of formation + Delta-G solvation = -59.055587 kcal Electronic energy + Delta-G solvation = -23606.830227 eV Core-core repulsion = 20160.706241 eV Total energy + Delta-G solvation = -3446.123987 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.43748 -41.50152 -38.16218 -37.22763 -35.27845 -34.98888 -33.92026 -32.49465 -31.82050 -28.93679 -27.22970 -25.72949 -24.31689 -22.66829 -21.73374 -21.04542 -20.94077 -20.20891 -19.44164 -18.75603 -18.22723 -17.76936 -16.93175 -16.74705 -16.46806 -16.08545 -15.72273 -15.22134 -14.89661 -14.60337 -14.21440 -14.04574 -13.96997 -13.70511 -13.64895 -13.53508 -13.30426 -13.19316 -12.96662 -12.54540 -12.17447 -12.06126 -11.89098 -11.81457 -11.72104 -11.46496 -11.29432 -11.03870 -10.80578 -10.25794 -10.15391 -9.35420 -8.62660 -6.76938 0.83692 1.15513 1.20092 1.23628 1.31985 1.37877 1.52874 1.71010 1.96588 2.08033 2.23275 2.90163 3.61000 3.78177 3.85172 4.00940 4.10345 4.18377 4.19271 4.24700 4.29104 4.34886 4.50521 4.53430 4.70880 4.82222 4.90219 4.94958 5.00186 5.03892 5.07578 5.16336 5.20026 5.22019 5.62026 5.69835 5.75810 5.89541 5.91905 5.99577 6.02851 6.28965 6.35601 6.90580 6.93748 8.50981 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.011497 B = 0.007075 C = 0.005464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2434.827282 B = 3956.890112 C = 5123.073628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.158 4.158 3 C -0.074 4.074 4 C -0.069 4.069 5 C -0.075 4.075 6 C -0.181 4.181 7 C -0.181 4.181 8 C 0.444 3.556 9 O -0.552 6.552 10 O -0.352 6.352 11 C 0.259 3.741 12 H 0.067 0.933 13 C -0.518 4.518 14 H 0.048 0.952 15 C 0.055 3.945 16 N -0.897 5.897 17 Si 0.922 3.078 18 H -0.256 1.256 19 H -0.260 1.260 20 H -0.265 1.265 21 C -0.016 4.016 22 C -0.234 4.234 23 C -0.214 4.214 24 C -0.058 4.058 25 O -0.191 6.191 26 H 0.092 0.908 27 H 0.120 0.880 28 H 0.132 0.868 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.118 0.882 32 H 0.120 0.880 33 H 0.064 0.936 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.123 0.877 37 H 0.282 0.718 38 H 0.146 0.854 39 H 0.180 0.820 40 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.302 -6.954 -2.513 16.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.176 4.176 3 C -0.112 4.112 4 C -0.088 4.088 5 C -0.112 4.112 6 C -0.199 4.199 7 C -0.217 4.217 8 C 0.289 3.711 9 O -0.444 6.444 10 O -0.269 6.269 11 C 0.207 3.793 12 H 0.084 0.916 13 C -0.554 4.554 14 H 0.066 0.934 15 C -0.151 4.151 16 N -0.533 5.533 17 Si 0.745 3.255 18 H -0.181 1.181 19 H -0.184 1.184 20 H -0.190 1.190 21 C -0.067 4.067 22 C -0.253 4.253 23 C -0.233 4.233 24 C -0.124 4.124 25 O -0.087 6.087 26 H 0.110 0.890 27 H 0.138 0.862 28 H 0.149 0.851 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.136 0.864 32 H 0.138 0.862 33 H 0.082 0.918 34 H 0.112 0.888 35 H 0.110 0.890 36 H 0.141 0.859 37 H 0.092 0.908 38 H 0.164 0.836 39 H 0.198 0.802 40 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -14.129 -6.971 -2.621 15.972 hybrid contribution 0.642 0.850 -0.600 1.222 sum -13.488 -6.122 -3.220 15.158 Atomic orbital electron populations 1.24071 0.95692 1.02754 0.99663 1.22904 0.96218 0.97348 1.01085 1.20582 0.97025 0.97215 0.96354 1.21217 0.96804 0.88026 1.02761 1.20760 0.94800 0.99174 0.96489 1.23308 0.99548 0.99504 0.97580 1.23931 1.01067 0.97131 0.99588 1.24655 0.76972 0.91243 0.78241 1.90531 1.62447 1.49774 1.41639 1.87056 1.51384 1.38231 1.50207 1.19124 0.88921 0.77575 0.93714 0.91573 1.20723 0.87633 1.52205 0.94870 0.93386 1.25715 0.94400 0.91711 1.03257 1.69933 0.99560 1.45695 1.38153 0.86104 0.79104 0.80322 0.80012 1.18075 1.18390 1.18956 1.23099 0.98421 0.96852 0.88323 1.21758 1.05387 0.94233 1.03920 1.22090 1.03367 1.01898 0.95897 1.24937 1.00984 0.84218 1.02305 1.84032 1.52072 1.38720 1.33885 0.88953 0.86229 0.85070 0.91652 0.90985 0.86445 0.86223 0.91790 0.88757 0.88979 0.85886 0.90812 0.83624 0.80224 0.73880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.08 14.32 67.78 0.97 -2.11 16 2 C -0.16 -2.97 9.03 25.64 0.23 -2.74 16 3 C -0.07 -1.95 4.48 29.85 0.13 -1.81 16 4 C -0.07 -2.12 2.30 -11.54 -0.03 -2.15 16 5 C -0.08 -2.10 5.02 29.85 0.15 -1.95 16 6 C -0.18 -6.00 8.90 25.65 0.23 -5.77 16 7 C -0.18 -4.85 14.32 67.78 0.97 -3.88 16 8 C 0.44 18.92 7.16 71.24 0.51 19.43 16 9 O -0.55 -25.92 15.14 21.97 0.33 -25.59 16 10 O -0.35 -17.08 7.15 -48.94 -0.35 -17.43 16 11 C 0.26 13.51 1.97 29.10 0.06 13.57 16 12 H 0.07 3.53 4.54 -2.39 -0.01 3.52 16 13 C -0.52 -30.27 9.23 25.60 0.24 -30.03 16 14 H 0.05 3.11 8.06 -2.91 -0.02 3.09 16 15 C 0.05 3.11 5.47 84.65 0.46 3.57 16 16 N -0.90 -52.93 13.96 21.45 0.30 -52.64 16 17 Si 0.92 44.02 26.90 68.60 1.85 45.87 16 18 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 19 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 20 H -0.27 -12.87 6.93 99.48 0.69 -12.18 16 21 C -0.02 -0.79 6.17 24.83 0.15 -0.63 16 22 C -0.23 -9.94 10.81 22.19 0.24 -9.70 16 23 C -0.21 -7.19 10.91 22.19 0.24 -6.95 16 24 C -0.06 -1.92 12.09 66.97 0.81 -1.11 16 25 O -0.19 -8.45 10.64 0.24 0.00 -8.45 16 26 H 0.09 1.60 7.84 -2.91 -0.02 1.58 16 27 H 0.12 1.46 8.06 -2.91 -0.02 1.44 16 28 H 0.13 1.94 6.86 -2.91 -0.02 1.92 16 29 H 0.06 1.84 7.61 -2.38 -0.02 1.83 16 30 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.12 3.31 8.14 -2.39 -0.02 3.29 16 32 H 0.12 2.32 6.19 -2.39 -0.01 2.30 16 33 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.09 4.07 5.88 -2.91 -0.02 4.06 16 35 H 0.09 2.53 8.06 -2.91 -0.02 2.50 16 36 H 0.12 2.42 7.84 -2.91 -0.02 2.39 16 37 H 0.28 15.24 8.31 -92.71 -0.77 14.47 16 38 H 0.15 5.86 8.06 -2.91 -0.02 5.84 16 39 H 0.18 4.47 8.06 -2.91 -0.02 4.45 16 40 H 0.25 5.12 8.06 -2.91 -0.02 5.09 16 Total: -1.00 -71.45 344.95 8.51 -62.95 By element: Atomic # 1 Polarization: 26.54 SS G_CDS: 1.01 Total: 27.55 kcal Atomic # 6 Polarization: -37.64 SS G_CDS: 5.37 Total: -32.27 kcal Atomic # 7 Polarization: -52.93 SS G_CDS: 0.30 Total: -52.64 kcal Atomic # 8 Polarization: -51.45 SS G_CDS: -0.01 Total: -51.47 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 1.85 Total: 45.87 kcal Total: -71.45 8.51 -62.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347949350.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.891 kcal (2) G-P(sol) polarization free energy of solvation -71.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds