Wall clock time and date at job start Tue Mar 31 2020 06:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46929 * 2 1 4 4 H 1.08994 * 109.47384 * 305.25281 * 3 2 1 5 5 C 1.50701 * 109.47130 * 185.25465 * 3 2 1 6 6 H 1.08007 * 120.00180 * 244.97324 * 5 3 2 7 7 C 1.37874 * 120.00249 * 64.96792 * 5 3 2 8 8 N 1.31512 * 120.00192 * 185.93920 * 7 5 3 9 9 Si 1.86803 * 119.99608 * 5.94054 * 7 5 3 10 10 H 1.48501 * 109.46928 * 269.99644 * 9 7 5 11 11 H 1.48495 * 109.47565 * 29.99713 * 9 7 5 12 12 H 1.48503 * 109.46881 * 150.00211 * 9 7 5 13 13 O 1.45205 * 109.47179 * 65.25834 * 3 2 1 14 14 C 1.34236 * 116.99608 * 263.15801 * 13 3 2 15 15 O 1.20830 * 119.99960 * 0.86595 * 14 13 3 16 16 C 1.50696 * 119.99886 * 180.87089 * 14 13 3 17 17 O 1.42902 * 115.55084 * 11.01045 * 16 14 13 18 18 C 1.35895 * 117.00214 * 65.37079 * 17 16 14 19 19 C 1.38731 * 120.05447 * 4.89209 * 18 17 16 20 20 C 1.38152 * 119.94063 * 179.74602 * 19 18 17 21 21 C 1.38263 * 120.05947 * 0.50439 * 20 19 18 22 22 C 1.38265 * 120.10793 * 359.76760 * 21 20 19 23 23 C 1.38143 * 120.05609 * 359.97438 * 22 21 20 24 24 C 1.52995 * 117.49951 * 225.29839 * 16 14 13 25 25 C 1.52996 * 60.00165 * 252.51246 * 24 16 14 26 26 H 1.09002 * 109.47733 * 299.99987 * 1 2 3 27 27 H 1.09003 * 109.46775 * 60.00080 * 1 2 3 28 28 H 1.08998 * 109.47133 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47280 * 240.00224 * 2 1 3 30 30 H 1.08997 * 109.47103 * 119.99657 * 2 1 3 31 31 H 0.96993 * 120.00193 * 354.98225 * 8 7 5 32 32 H 1.07996 * 120.03038 * 359.97438 * 19 18 17 33 33 H 1.07998 * 119.96994 * 180.27926 * 20 19 18 34 34 H 1.07997 * 119.94529 * 179.75126 * 21 20 19 35 35 H 1.08004 * 119.97347 * 179.97438 * 22 21 20 36 36 H 1.08008 * 120.02640 * 180.02562 * 23 22 21 37 37 H 1.08999 * 117.49803 * 0.02562 * 24 16 14 38 38 H 1.09000 * 117.50170 * 145.01831 * 24 16 14 39 39 H 1.09001 * 117.49778 * 252.50868 * 25 24 16 40 40 H 1.09001 * 117.50440 * 107.49163 * 25 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6018 1.9828 -0.8391 5 6 3.5413 1.4446 -0.1301 6 1 4.1530 1.8149 0.6793 7 6 4.1341 0.9736 -1.2824 8 7 5.4429 0.8659 -1.3519 9 14 3.0780 0.4884 -2.7448 10 1 2.7168 -0.9482 -2.6396 11 1 1.8412 1.3102 -2.7567 12 1 3.8366 0.7173 -4.0008 13 8 1.6611 2.0898 1.2433 14 6 0.5487 2.8410 1.2249 15 8 -0.0959 2.9412 0.2078 16 6 0.1039 3.5594 2.4727 17 8 1.0508 3.5800 3.5427 18 6 2.2055 4.2648 3.3317 19 6 2.3804 4.9877 2.1606 20 6 3.5531 5.6873 1.9508 21 6 4.5561 5.6590 2.9021 22 6 4.3864 4.9346 4.0675 23 6 3.2135 4.2377 4.2845 24 6 -1.3787 3.4815 2.8422 25 6 -0.7932 4.7866 2.2995 26 1 -0.3635 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 5.9953 1.1853 -0.6214 32 1 1.5991 5.0066 1.4153 33 1 3.6880 6.2539 1.0413 34 1 5.4737 6.2033 2.7343 35 1 5.1715 4.9137 4.8089 36 1 3.0813 3.6724 5.1952 37 1 -2.0323 2.9103 2.1830 38 1 -1.6322 3.4457 3.9017 39 1 -0.6614 5.6096 3.0020 40 1 -1.0616 5.0745 1.2831 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348231472.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:34 Heat of formation + Delta-G solvation = -67.811318 kcal Electronic energy + Delta-G solvation = -24122.102172 eV Core-core repulsion = 20675.598509 eV Total energy + Delta-G solvation = -3446.503664 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.81318 -39.31047 -37.76687 -36.34685 -34.82101 -33.58476 -31.94410 -30.73889 -29.54677 -27.73216 -25.12917 -23.08094 -22.68481 -22.31738 -22.04651 -20.53559 -19.65957 -18.55343 -17.54475 -16.92685 -16.28039 -15.91407 -15.59115 -15.50573 -14.43957 -14.29792 -14.06215 -13.78980 -13.38932 -13.25003 -13.17033 -12.79604 -12.62127 -12.46200 -11.85452 -11.77813 -11.69224 -11.54509 -11.34330 -11.15035 -10.95967 -10.84310 -10.61648 -10.22849 -10.02454 -9.96085 -9.74036 -9.58987 -8.76609 -8.71977 -8.56462 -8.00794 -6.60822 -4.25057 1.58309 1.66183 2.37432 2.92350 3.12433 3.27576 3.37288 3.49903 3.72677 4.02016 4.34312 4.50774 4.61896 4.99034 5.06287 5.11159 5.12693 5.29229 5.35177 5.36505 5.59070 5.60432 5.68882 5.79820 5.84489 5.85725 5.90242 5.97959 6.20402 6.40923 6.49575 6.53159 6.62862 6.67247 6.68660 6.75266 6.93977 7.04367 7.32544 7.49314 7.74690 8.23331 8.38535 8.83345 9.44129 10.81684 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.013914 B = 0.007261 C = 0.005369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.909657 B = 3855.357094 C = 5214.068392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.144 4.144 3 C 0.192 3.808 4 H 0.047 0.953 5 C -0.596 4.596 6 H 0.069 0.931 7 C 0.037 3.963 8 N -0.900 5.900 9 Si 1.042 2.958 10 H -0.278 1.278 11 H -0.274 1.274 12 H -0.283 1.283 13 O -0.325 6.325 14 C 0.475 3.525 15 O -0.511 6.511 16 C 0.022 3.978 17 O -0.265 6.265 18 C 0.133 3.867 19 C -0.184 4.184 20 C -0.076 4.076 21 C -0.155 4.155 22 C -0.085 4.085 23 C -0.148 4.148 24 C -0.116 4.116 25 C -0.162 4.162 26 H 0.041 0.959 27 H 0.054 0.946 28 H 0.046 0.954 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.271 0.729 32 H 0.120 0.880 33 H 0.123 0.877 34 H 0.121 0.879 35 H 0.126 0.874 36 H 0.127 0.873 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.116 0.884 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.745 8.157 9.490 15.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.182 4.182 3 C 0.139 3.861 4 H 0.065 0.935 5 C -0.634 4.634 6 H 0.087 0.913 7 C -0.169 4.169 8 N -0.534 5.534 9 Si 0.871 3.129 10 H -0.205 1.205 11 H -0.200 1.200 12 H -0.209 1.209 13 O -0.239 6.239 14 C 0.317 3.683 15 O -0.402 6.402 16 C -0.019 4.019 17 O -0.178 6.178 18 C 0.088 3.912 19 C -0.202 4.202 20 C -0.094 4.094 21 C -0.173 4.173 22 C -0.103 4.103 23 C -0.167 4.167 24 C -0.153 4.153 25 C -0.199 4.199 26 H 0.060 0.940 27 H 0.073 0.927 28 H 0.065 0.935 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.138 0.862 33 H 0.141 0.859 34 H 0.139 0.861 35 H 0.144 0.856 36 H 0.145 0.855 37 H 0.138 0.862 38 H 0.136 0.864 39 H 0.134 0.866 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -9.856 7.385 7.816 14.587 hybrid contribution 0.075 0.499 1.231 1.331 sum -9.782 7.884 9.047 15.482 Atomic orbital electron populations 1.21874 0.97407 1.00289 1.01314 1.22290 0.93883 0.99443 1.02558 1.21210 0.96766 0.88127 0.80031 0.93493 1.22013 0.88634 1.48022 1.04707 0.91260 1.25643 0.97543 0.94025 0.99674 1.70802 1.04042 1.42329 1.36214 0.84050 0.75433 0.77230 0.76236 1.20460 1.19967 1.20895 1.86592 1.38566 1.56781 1.41997 1.22376 0.80441 0.77642 0.87830 1.90625 1.55125 1.61891 1.32532 1.21538 0.88442 1.04382 0.87535 1.86071 1.25797 1.69270 1.36678 1.18939 0.86042 0.91630 0.94557 1.21184 1.00190 1.01597 0.97277 1.20917 0.92586 0.97482 0.98414 1.21012 0.99347 1.02119 0.94858 1.20877 0.96092 0.95967 0.97391 1.20324 0.92606 1.03815 0.99919 1.23377 0.88546 0.99542 1.03835 1.23711 0.99846 0.91669 1.04718 0.93956 0.92720 0.93537 0.91153 0.91481 0.91850 0.86243 0.85949 0.86106 0.85592 0.85457 0.86240 0.86394 0.86604 0.86356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 8.80 37.16 0.33 -2.62 16 2 C -0.14 -3.30 5.24 -26.73 -0.14 -3.44 16 3 C 0.19 4.92 1.79 -27.88 -0.05 4.87 16 4 H 0.05 1.26 5.46 -51.93 -0.28 0.98 16 5 C -0.60 -17.27 9.25 -34.44 -0.32 -17.59 16 6 H 0.07 2.19 8.05 -52.48 -0.42 1.77 16 7 C 0.04 1.06 5.43 -17.82 -0.10 0.97 16 8 N -0.90 -27.51 13.70 55.43 0.76 -26.75 16 9 Si 1.04 25.50 25.34 -169.99 -4.31 21.19 16 10 H -0.28 -6.36 6.75 56.52 0.38 -5.98 16 11 H -0.27 -6.44 6.37 56.52 0.36 -6.08 16 12 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 13 O -0.32 -7.78 8.91 -43.78 -0.39 -8.17 16 14 C 0.47 9.74 4.49 36.00 0.16 9.90 16 15 O -0.51 -10.99 14.41 -18.75 -0.27 -11.26 16 16 C 0.02 0.36 1.78 -91.78 -0.16 0.19 16 17 O -0.26 -4.57 10.16 -30.46 -0.31 -4.88 16 18 C 0.13 2.32 6.17 -39.22 -0.24 2.08 16 19 C -0.18 -3.25 8.33 -39.43 -0.33 -3.58 16 20 C -0.08 -1.23 10.04 -39.60 -0.40 -1.63 16 21 C -0.16 -2.28 10.04 -39.56 -0.40 -2.68 16 22 C -0.09 -1.21 10.04 -39.61 -0.40 -1.61 16 23 C -0.15 -2.32 9.99 -39.43 -0.39 -2.72 16 24 C -0.12 -1.36 10.10 -26.74 -0.27 -1.63 16 25 C -0.16 -1.97 9.05 -26.73 -0.24 -2.22 16 26 H 0.04 0.80 6.57 -51.93 -0.34 0.46 16 27 H 0.05 1.07 8.08 -51.93 -0.42 0.65 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.07 1.63 4.36 -51.93 -0.23 1.40 16 30 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 31 H 0.27 8.27 8.72 -40.82 -0.36 7.91 16 32 H 0.12 2.15 5.37 -52.49 -0.28 1.86 16 33 H 0.12 1.76 8.06 -52.49 -0.42 1.34 16 34 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 35 H 0.13 1.40 8.06 -52.48 -0.42 0.98 16 36 H 0.13 1.74 8.06 -52.48 -0.42 1.32 16 37 H 0.12 1.33 8.14 -51.93 -0.42 0.91 16 38 H 0.12 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.12 1.19 8.14 -51.93 -0.42 0.76 16 40 H 0.12 1.44 7.86 -51.93 -0.41 1.03 16 LS Contribution 330.68 15.07 4.98 4.98 Total: -1.00 -32.63 330.68 -7.88 -40.51 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -5.40 Total: 6.07 kcal Atomic # 6 Polarization: -18.75 SS G_CDS: -2.95 Total: -21.70 kcal Atomic # 7 Polarization: -27.51 SS G_CDS: 0.76 Total: -26.75 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: -0.97 Total: -24.31 kcal Atomic # 14 Polarization: 25.50 SS G_CDS: -4.31 Total: 21.19 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.63 -7.88 -40.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348231472.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.297 kcal (2) G-P(sol) polarization free energy of solvation -32.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds