Wall clock time and date at job start Tue Mar 31 2020 06:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46929 * 2 1 4 4 H 1.08994 * 109.47384 * 305.25281 * 3 2 1 5 5 C 1.50701 * 109.47130 * 185.25465 * 3 2 1 6 6 H 1.08007 * 120.00180 * 244.97324 * 5 3 2 7 7 C 1.37874 * 120.00249 * 64.96792 * 5 3 2 8 8 N 1.31512 * 120.00192 * 185.93920 * 7 5 3 9 9 Si 1.86803 * 119.99608 * 5.94054 * 7 5 3 10 10 H 1.48501 * 109.46928 * 269.99644 * 9 7 5 11 11 H 1.48495 * 109.47565 * 29.99713 * 9 7 5 12 12 H 1.48503 * 109.46881 * 150.00211 * 9 7 5 13 13 O 1.45205 * 109.47179 * 65.25834 * 3 2 1 14 14 C 1.34236 * 116.99608 * 263.15801 * 13 3 2 15 15 O 1.20830 * 119.99960 * 0.86595 * 14 13 3 16 16 C 1.50696 * 119.99886 * 180.87089 * 14 13 3 17 17 O 1.42902 * 115.55084 * 11.01045 * 16 14 13 18 18 C 1.35895 * 117.00214 * 65.37079 * 17 16 14 19 19 C 1.38731 * 120.05447 * 4.89209 * 18 17 16 20 20 C 1.38152 * 119.94063 * 179.74602 * 19 18 17 21 21 C 1.38263 * 120.05947 * 0.50439 * 20 19 18 22 22 C 1.38265 * 120.10793 * 359.76760 * 21 20 19 23 23 C 1.38143 * 120.05609 * 359.97438 * 22 21 20 24 24 C 1.52995 * 117.49951 * 225.29839 * 16 14 13 25 25 C 1.52996 * 60.00165 * 252.51246 * 24 16 14 26 26 H 1.09002 * 109.47733 * 299.99987 * 1 2 3 27 27 H 1.09003 * 109.46775 * 60.00080 * 1 2 3 28 28 H 1.08998 * 109.47133 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47280 * 240.00224 * 2 1 3 30 30 H 1.08997 * 109.47103 * 119.99657 * 2 1 3 31 31 H 0.96993 * 120.00193 * 354.98225 * 8 7 5 32 32 H 1.07996 * 120.03038 * 359.97438 * 19 18 17 33 33 H 1.07998 * 119.96994 * 180.27926 * 20 19 18 34 34 H 1.07997 * 119.94529 * 179.75126 * 21 20 19 35 35 H 1.08004 * 119.97347 * 179.97438 * 22 21 20 36 36 H 1.08008 * 120.02640 * 180.02562 * 23 22 21 37 37 H 1.08999 * 117.49803 * 0.02562 * 24 16 14 38 38 H 1.09000 * 117.50170 * 145.01831 * 24 16 14 39 39 H 1.09001 * 117.49778 * 252.50868 * 25 24 16 40 40 H 1.09001 * 117.50440 * 107.49163 * 25 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6018 1.9828 -0.8391 5 6 3.5413 1.4446 -0.1301 6 1 4.1530 1.8149 0.6793 7 6 4.1341 0.9736 -1.2824 8 7 5.4429 0.8659 -1.3519 9 14 3.0780 0.4884 -2.7448 10 1 2.7168 -0.9482 -2.6396 11 1 1.8412 1.3102 -2.7567 12 1 3.8366 0.7173 -4.0008 13 8 1.6611 2.0898 1.2433 14 6 0.5487 2.8410 1.2249 15 8 -0.0959 2.9412 0.2078 16 6 0.1039 3.5594 2.4727 17 8 1.0508 3.5800 3.5427 18 6 2.2055 4.2648 3.3317 19 6 2.3804 4.9877 2.1606 20 6 3.5531 5.6873 1.9508 21 6 4.5561 5.6590 2.9021 22 6 4.3864 4.9346 4.0675 23 6 3.2135 4.2377 4.2845 24 6 -1.3787 3.4815 2.8422 25 6 -0.7932 4.7866 2.2995 26 1 -0.3635 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 5.9953 1.1853 -0.6214 32 1 1.5991 5.0066 1.4153 33 1 3.6880 6.2539 1.0413 34 1 5.4737 6.2033 2.7343 35 1 5.1715 4.9137 4.8089 36 1 3.0813 3.6724 5.1952 37 1 -2.0323 2.9103 2.1830 38 1 -1.6322 3.4457 3.9017 39 1 -0.6614 5.6096 3.0020 40 1 -1.0616 5.0745 1.2831 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001348231472.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:34 Heat of formation + Delta-G solvation = -86.690640 kcal Electronic energy + Delta-G solvation = -24122.920841 eV Core-core repulsion = 20675.598509 eV Total energy + Delta-G solvation = -3447.322332 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.21950 -40.76489 -39.05255 -37.95429 -36.08777 -35.56103 -33.94775 -31.95487 -30.76132 -29.66406 -26.60721 -24.46969 -24.10362 -23.80466 -23.17618 -22.26926 -21.19028 -20.18656 -19.56326 -18.37424 -17.75194 -17.25298 -17.07753 -16.82691 -16.03282 -15.58889 -15.40168 -15.15812 -15.01609 -14.82117 -14.69529 -14.40892 -14.33033 -14.15411 -13.50320 -13.07853 -12.99094 -12.80707 -12.70972 -12.63154 -12.49071 -12.37370 -12.01929 -11.90982 -11.71557 -11.53459 -11.37072 -11.32015 -10.85970 -10.78893 -9.98839 -9.25748 -8.94729 -6.60312 0.34479 0.42149 0.91950 1.31286 1.42259 1.58821 1.64914 1.73601 2.30076 2.58963 2.79321 2.89066 3.35586 3.51509 3.59710 3.86466 3.89701 4.08323 4.14950 4.15054 4.20878 4.25053 4.43745 4.46611 4.49899 4.52954 4.69861 4.71515 4.92860 4.94872 4.95573 4.98649 5.00632 5.27398 5.28629 5.39051 5.41689 5.53284 5.72704 5.75257 5.88058 6.22093 6.34080 6.76561 7.18391 8.46510 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.013914 B = 0.007261 C = 0.005369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.909657 B = 3855.357094 C = 5214.068392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.143 4.143 3 C 0.196 3.804 4 H 0.034 0.966 5 C -0.604 4.604 6 H 0.025 0.975 7 C -0.007 4.007 8 N -0.924 5.924 9 Si 1.077 2.923 10 H -0.247 1.247 11 H -0.262 1.262 12 H -0.277 1.277 13 O -0.346 6.346 14 C 0.471 3.529 15 O -0.527 6.527 16 C -0.016 4.016 17 O -0.269 6.269 18 C 0.112 3.888 19 C -0.206 4.206 20 C -0.096 4.096 21 C -0.160 4.160 22 C -0.083 4.083 23 C -0.161 4.161 24 C -0.087 4.087 25 C -0.142 4.142 26 H 0.041 0.959 27 H 0.052 0.948 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.257 0.743 32 H 0.108 0.892 33 H 0.131 0.869 34 H 0.147 0.853 35 H 0.161 0.839 36 H 0.145 0.855 37 H 0.128 0.872 38 H 0.149 0.851 39 H 0.138 0.862 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.787 8.060 10.148 17.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.180 4.180 3 C 0.141 3.859 4 H 0.052 0.948 5 C -0.641 4.641 6 H 0.043 0.957 7 C -0.206 4.206 8 N -0.559 5.559 9 Si 0.897 3.103 10 H -0.171 1.171 11 H -0.186 1.186 12 H -0.203 1.203 13 O -0.262 6.262 14 C 0.315 3.685 15 O -0.418 6.418 16 C -0.057 4.057 17 O -0.183 6.183 18 C 0.068 3.932 19 C -0.224 4.224 20 C -0.114 4.114 21 C -0.178 4.178 22 C -0.101 4.101 23 C -0.179 4.179 24 C -0.123 4.123 25 C -0.179 4.179 26 H 0.060 0.940 27 H 0.071 0.929 28 H 0.099 0.901 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.066 0.934 32 H 0.126 0.874 33 H 0.149 0.851 34 H 0.165 0.835 35 H 0.179 0.821 36 H 0.163 0.837 37 H 0.146 0.854 38 H 0.167 0.833 39 H 0.156 0.844 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -11.911 7.296 8.506 16.354 hybrid contribution 0.759 0.637 1.126 1.500 sum -11.152 7.933 9.632 16.735 Atomic orbital electron populations 1.21788 0.94401 1.02540 1.01192 1.22190 0.96560 0.97016 1.02280 1.20904 0.94321 0.89968 0.80666 0.94808 1.22100 0.90750 1.47661 1.03614 0.95694 1.27052 0.97817 0.93443 1.02316 1.70916 1.05003 1.44090 1.35881 0.83650 0.74460 0.79051 0.73131 1.17125 1.18640 1.20263 1.86571 1.40777 1.57911 1.40911 1.23223 0.79055 0.76762 0.89440 1.90591 1.55283 1.62377 1.33575 1.21763 0.90061 1.07516 0.86349 1.86061 1.25956 1.69414 1.36821 1.19243 0.86874 0.92092 0.95038 1.21225 1.00671 1.02936 0.97607 1.21215 0.92869 0.97882 0.99461 1.21401 0.99805 1.02051 0.94586 1.21343 0.96350 0.94580 0.97823 1.20720 0.92721 1.04158 1.00330 1.23686 0.84575 0.98184 1.05854 1.23860 0.96867 0.91755 1.05382 0.93992 0.92926 0.90054 0.91231 0.91967 0.93415 0.87429 0.85099 0.83481 0.82118 0.83744 0.85429 0.83330 0.84419 0.86512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.21 8.80 71.98 0.63 -4.57 16 2 C -0.14 -6.42 5.24 30.59 0.16 -6.26 16 3 C 0.20 10.17 1.79 29.85 0.05 10.22 16 4 H 0.03 1.84 5.46 -2.39 -0.01 1.83 16 5 C -0.60 -36.38 9.25 25.60 0.24 -36.14 16 6 H 0.02 1.67 8.05 -2.91 -0.02 1.65 16 7 C -0.01 -0.41 5.43 84.65 0.46 0.04 16 8 N -0.92 -58.15 13.70 21.45 0.29 -57.85 16 9 Si 1.08 50.86 25.34 68.60 1.74 52.60 16 10 H -0.25 -10.41 6.75 99.48 0.67 -9.74 16 11 H -0.26 -11.76 6.37 99.48 0.63 -11.13 16 12 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 13 O -0.35 -17.01 8.91 -47.16 -0.42 -17.43 16 14 C 0.47 19.39 4.49 71.23 0.32 19.71 16 15 O -0.53 -22.56 14.41 21.95 0.32 -22.24 16 16 C -0.02 -0.51 1.78 -11.54 -0.02 -0.53 16 17 O -0.27 -9.18 10.16 -81.81 -0.83 -10.01 16 18 C 0.11 3.96 6.17 22.51 0.14 4.09 16 19 C -0.21 -7.50 8.33 22.37 0.19 -7.31 16 20 C -0.10 -3.20 10.04 22.26 0.22 -2.98 16 21 C -0.16 -4.64 10.04 22.28 0.22 -4.42 16 22 C -0.08 -2.28 10.04 22.25 0.22 -2.05 16 23 C -0.16 -4.98 9.99 22.37 0.22 -4.76 16 24 C -0.09 -1.77 10.10 30.59 0.31 -1.46 16 25 C -0.14 -3.16 9.05 30.59 0.28 -2.89 16 26 H 0.04 1.52 6.57 -2.39 -0.02 1.50 16 27 H 0.05 1.94 8.08 -2.39 -0.02 1.92 16 28 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 29 H 0.07 3.11 4.36 -2.39 -0.01 3.10 16 30 H 0.06 2.81 8.14 -2.39 -0.02 2.79 16 31 H 0.26 16.42 8.72 -92.71 -0.81 15.61 16 32 H 0.11 4.04 5.37 -2.91 -0.02 4.03 16 33 H 0.13 3.92 8.06 -2.91 -0.02 3.90 16 34 H 0.15 3.36 8.06 -2.91 -0.02 3.34 16 35 H 0.16 3.17 8.06 -2.91 -0.02 3.15 16 36 H 0.14 3.82 8.06 -2.91 -0.02 3.80 16 37 H 0.13 2.44 8.14 -2.39 -0.02 2.42 16 38 H 0.15 2.15 8.14 -2.39 -0.02 2.13 16 39 H 0.14 2.47 8.14 -2.39 -0.02 2.45 16 40 H 0.12 2.66 7.86 -2.39 -0.02 2.64 16 Total: -1.00 -74.18 330.68 5.64 -68.54 By element: Atomic # 1 Polarization: 24.80 SS G_CDS: 0.90 Total: 25.70 kcal Atomic # 6 Polarization: -42.95 SS G_CDS: 3.65 Total: -39.30 kcal Atomic # 7 Polarization: -58.15 SS G_CDS: 0.29 Total: -57.85 kcal Atomic # 8 Polarization: -48.75 SS G_CDS: -0.93 Total: -49.68 kcal Atomic # 14 Polarization: 50.86 SS G_CDS: 1.74 Total: 52.60 kcal Total: -74.18 5.64 -68.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348231472.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.154 kcal (2) G-P(sol) polarization free energy of solvation -74.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds