Wall clock time and date at job start Tue Mar 31 2020 06:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09002 * 109.62918 * 2 1 4 4 C 1.53008 * 109.79189 * 239.50802 * 2 1 3 5 5 C 1.50103 * 110.07619 * 190.22308 * 4 2 1 6 6 C 1.31649 * 123.77301 * 17.66664 * 5 4 2 7 7 C 1.46950 * 118.10995 * 179.30323 * 6 5 4 8 8 O 1.21533 * 120.00040 * 359.72354 * 7 6 5 9 9 O 1.34803 * 119.99890 * 179.73255 * 7 6 5 10 10 C 1.45196 * 116.99818 * 179.97438 * 9 7 6 11 11 H 1.09000 * 109.47314 * 329.99846 * 10 9 7 12 12 C 1.50701 * 109.47233 * 210.00096 * 10 9 7 13 13 H 1.08003 * 119.99877 * 359.97438 * 12 10 9 14 14 C 1.37878 * 120.00434 * 180.02562 * 12 10 9 15 15 N 1.31509 * 119.99431 * 0.02562 * 14 12 10 16 16 Si 1.86792 * 120.00151 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.47220 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.47130 * 119.99910 * 16 14 12 19 19 H 1.48502 * 109.47471 * 239.99980 * 16 14 12 20 20 C 1.50703 * 109.47189 * 89.99951 * 10 9 7 21 21 C 1.34507 * 125.78834 * 219.71216 * 20 10 9 22 22 C 1.41386 * 106.84010 * 180.26118 * 21 20 10 23 23 C 1.34511 * 106.84141 * 0.02562 * 22 21 20 24 24 O 1.34304 * 125.78797 * 40.02394 * 20 10 9 25 25 C 1.50098 * 123.77753 * 359.01443 * 6 5 4 26 26 C 1.53011 * 110.13315 * 17.45298 * 25 6 5 27 27 H 1.09005 * 109.47383 * 299.60835 * 1 2 3 28 28 H 1.08998 * 109.47701 * 59.60996 * 1 2 3 29 29 H 1.09003 * 109.47103 * 179.61099 * 1 2 3 30 30 H 1.09000 * 109.36536 * 310.64004 * 4 2 1 31 31 H 1.09007 * 109.36044 * 70.36698 * 4 2 1 32 32 H 1.07998 * 118.11617 * 197.37993 * 5 4 2 33 33 H 0.97007 * 119.99674 * 180.02562 * 15 14 12 34 34 H 1.08004 * 126.58507 * 0.26980 * 21 20 10 35 35 H 1.07999 * 126.57835 * 180.02562 * 22 21 20 36 36 H 1.08000 * 125.79478 * 179.97438 * 23 22 21 37 37 H 1.08992 * 109.35954 * 137.66034 * 25 6 5 38 38 H 1.09006 * 109.36074 * 257.38927 * 25 6 5 39 39 H 1.08996 * 109.62666 * 69.94533 * 26 25 6 40 40 H 1.08998 * 109.63085 * 190.52709 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 6 2.0480 -0.7305 -1.2406 5 6 3.5279 -0.9538 -1.1266 6 6 4.1939 -0.8810 0.0067 7 6 5.6405 -1.1379 -0.0225 8 8 6.1876 -1.4133 -1.0721 9 8 6.3605 -1.0682 1.1150 10 6 7.7840 -1.3345 1.0113 11 1 7.9643 -2.0350 0.1959 12 6 8.2791 -1.9303 2.3040 13 1 7.5926 -2.0923 3.1218 14 6 9.6087 -2.2678 2.4430 15 7 10.4450 -2.0691 1.4477 16 14 10.2224 -3.0057 4.0455 17 1 9.0915 -3.1255 5.0005 18 1 10.7936 -4.3513 3.7842 19 1 11.2700 -2.1275 4.6258 20 6 8.5174 -0.0465 0.7385 21 6 9.5590 0.1033 -0.0993 22 6 9.9365 1.4647 -0.0442 23 6 9.1033 2.0653 0.8245 24 8 8.2456 1.1452 1.2951 25 6 3.5618 -0.5446 1.3259 26 6 2.0452 -0.7307 1.2459 27 1 -0.3634 0.5077 0.8935 28 1 -0.3634 0.5199 -0.8864 29 1 -0.3633 -1.0277 -0.0070 30 1 1.5402 -1.6906 -1.3331 31 1 1.8452 -0.1278 -2.1259 32 1 4.0774 -1.1922 -2.0252 33 1 11.3804 -2.3069 1.5454 34 1 10.0187 -0.6682 -0.6992 35 1 10.7396 1.9327 -0.5940 36 1 9.1209 3.1101 1.0971 37 1 3.9660 -1.1996 2.0977 38 1 3.7838 0.4921 1.5791 39 1 1.8100 -1.7924 1.1712 40 1 1.5772 -0.3109 2.1364 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001518001429.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:28 Heat of formation + Delta-G solvation = -76.249179 kcal Electronic energy + Delta-G solvation = -23241.105962 eV Core-core repulsion = 19794.236406 eV Total energy + Delta-G solvation = -3446.869557 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.32736 -39.82019 -38.22465 -35.70661 -33.30376 -32.77782 -31.69286 -30.77885 -29.62154 -27.30484 -26.52747 -23.52260 -23.01626 -21.96490 -20.67234 -20.36361 -19.36583 -17.95570 -17.17687 -16.64943 -16.58126 -15.54704 -15.07383 -14.85228 -14.51097 -14.46089 -14.22776 -13.66468 -13.49260 -13.15171 -12.77736 -12.67781 -12.27665 -12.11549 -12.05217 -11.75819 -11.60589 -11.55296 -11.28054 -11.11689 -10.97271 -10.81391 -10.58198 -10.35500 -10.27366 -10.06697 -9.64762 -9.36299 -8.92890 -8.80923 -8.63930 -7.24321 -6.20545 -4.38289 1.56017 2.88810 3.21093 3.27466 3.32057 3.52986 3.58276 3.97143 4.21190 4.28678 4.58885 4.70595 4.80047 5.07774 5.09511 5.28842 5.40151 5.43287 5.47863 5.55255 5.60954 5.76816 5.82561 5.85589 5.92235 6.06478 6.08212 6.11960 6.14527 6.35107 6.37636 6.55074 6.72340 6.83999 7.00083 7.16322 7.24757 7.39705 7.70732 7.71264 7.87088 8.37394 8.53321 8.80135 9.28532 10.78327 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.018311 B = 0.004611 C = 0.004106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.733384 B = 6071.549320 C = 6816.856044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.098 4.098 3 H 0.075 0.925 4 C -0.086 4.086 5 C -0.085 4.085 6 C -0.138 4.138 7 C 0.487 3.513 8 O -0.520 6.520 9 O -0.341 6.341 10 C 0.297 3.703 11 H 0.078 0.922 12 C -0.529 4.529 13 H 0.078 0.922 14 C 0.069 3.931 15 N -0.868 5.868 16 Si 0.913 3.087 17 H -0.268 1.268 18 H -0.280 1.280 19 H -0.281 1.281 20 C 0.027 3.973 21 C -0.179 4.179 22 C -0.217 4.217 23 C -0.089 4.089 24 O -0.177 6.177 25 C -0.079 4.079 26 C -0.114 4.114 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.124 0.876 33 H 0.268 0.732 34 H 0.141 0.859 35 H 0.130 0.870 36 H 0.184 0.816 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.065 0.935 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.474 4.534 -2.588 15.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.117 4.117 3 H 0.093 0.907 4 C -0.123 4.123 5 C -0.104 4.104 6 C -0.139 4.139 7 C 0.332 3.668 8 O -0.412 6.412 9 O -0.257 6.257 10 C 0.244 3.756 11 H 0.095 0.905 12 C -0.567 4.567 13 H 0.096 0.904 14 C -0.137 4.137 15 N -0.502 5.502 16 Si 0.740 3.260 17 H -0.193 1.193 18 H -0.206 1.206 19 H -0.207 1.207 20 C -0.024 4.024 21 C -0.198 4.198 22 C -0.237 4.237 23 C -0.157 4.157 24 O -0.073 6.073 25 C -0.116 4.116 26 C -0.151 4.151 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.102 0.898 31 H 0.097 0.903 32 H 0.142 0.858 33 H 0.078 0.922 34 H 0.159 0.841 35 H 0.148 0.852 36 H 0.201 0.799 37 H 0.105 0.895 38 H 0.097 0.903 39 H 0.084 0.916 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.283 4.471 -2.711 15.210 hybrid contribution 1.219 -0.212 0.530 1.346 sum -13.064 4.259 -2.182 13.913 Atomic orbital electron populations 1.21815 0.94996 1.01807 1.01661 1.21258 0.95424 0.99999 0.94971 0.90702 1.20612 0.91815 1.01207 0.98625 1.22887 0.96116 0.93765 0.97589 1.20266 0.90489 1.06024 0.97086 1.21504 0.88735 0.73826 0.82760 1.90783 1.72842 1.45337 1.32190 1.86645 1.25250 1.79852 1.33963 1.19181 0.69873 0.86094 1.00500 0.90460 1.20930 0.94802 1.42140 0.98790 0.90373 1.24945 0.96006 0.94992 0.97721 1.70048 1.04439 1.44731 1.31007 0.86186 0.78902 0.78616 0.82308 1.19262 1.20560 1.20680 1.23547 1.00302 0.84893 0.93688 1.21205 0.99531 0.95187 1.03893 1.21684 1.02786 0.95437 1.03797 1.23598 0.95474 0.94492 1.02089 1.83990 1.49211 1.17544 1.56560 1.20341 0.94208 1.02870 0.94181 1.21695 0.95170 1.00738 0.97532 0.92555 0.92754 0.92639 0.89823 0.90302 0.85845 0.92237 0.84146 0.85162 0.79906 0.89485 0.90264 0.91607 0.91283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.20 37.15 0.34 -0.74 16 2 C -0.10 -0.93 2.76 -90.44 -0.25 -1.18 16 3 H 0.07 0.75 8.12 -51.93 -0.42 0.32 16 4 C -0.09 -0.85 5.44 -28.17 -0.15 -1.01 16 5 C -0.09 -1.19 9.42 -36.46 -0.34 -1.53 16 6 C -0.14 -2.27 5.79 -103.26 -0.60 -2.87 16 7 C 0.49 10.60 7.81 34.26 0.27 10.87 16 8 O -0.52 -12.55 15.22 -19.29 -0.29 -12.84 16 9 O -0.34 -8.28 9.16 -42.81 -0.39 -8.67 16 10 C 0.30 8.01 2.42 -29.03 -0.07 7.94 16 11 H 0.08 2.24 7.15 -51.93 -0.37 1.86 16 12 C -0.53 -14.76 8.89 -34.44 -0.31 -15.07 16 13 H 0.08 2.14 7.81 -52.48 -0.41 1.73 16 14 C 0.07 1.88 5.30 -17.82 -0.09 1.79 16 15 N -0.87 -24.21 10.92 55.43 0.61 -23.60 16 16 Si 0.91 21.02 29.54 -169.99 -5.02 16.00 16 17 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 18 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 20 C 0.03 0.71 5.54 -35.63 -0.20 0.51 16 21 C -0.18 -4.54 9.16 -39.70 -0.36 -4.90 16 22 C -0.22 -4.75 10.91 -39.70 -0.43 -5.18 16 23 C -0.09 -1.87 12.09 29.41 0.36 -1.52 16 24 O -0.18 -4.42 10.65 4.47 0.05 -4.38 16 25 C -0.08 -1.10 5.45 -28.17 -0.15 -1.26 16 26 C -0.11 -1.20 5.29 -26.54 -0.14 -1.34 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.08 0.74 8.11 -51.93 -0.42 0.32 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.12 1.84 7.17 -52.49 -0.38 1.46 16 33 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 34 H 0.14 3.65 7.86 -52.48 -0.41 3.23 16 35 H 0.13 2.40 8.06 -52.49 -0.42 1.98 16 36 H 0.18 2.92 8.06 -52.49 -0.42 2.49 16 37 H 0.09 1.30 7.93 -51.93 -0.41 0.89 16 38 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.07 0.68 8.12 -51.93 -0.42 0.26 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 337.81 15.07 5.09 5.09 Total: -1.00 -31.33 337.81 -7.86 -39.19 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -5.76 Total: 4.68 kcal Atomic # 6 Polarization: -13.34 SS G_CDS: -2.14 Total: -15.48 kcal Atomic # 7 Polarization: -24.21 SS G_CDS: 0.61 Total: -23.60 kcal Atomic # 8 Polarization: -25.25 SS G_CDS: -0.64 Total: -25.89 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.33 -7.86 -39.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001518001429.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.055 kcal (2) G-P(sol) polarization free energy of solvation -31.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds