Wall clock time and date at job start Tue Mar 31 2020 06:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09002 * 109.62918 * 2 1 4 4 C 1.53008 * 109.79189 * 239.50802 * 2 1 3 5 5 C 1.50103 * 110.07619 * 190.22308 * 4 2 1 6 6 C 1.31649 * 123.77301 * 17.66664 * 5 4 2 7 7 C 1.46950 * 118.10995 * 179.30323 * 6 5 4 8 8 O 1.21533 * 120.00040 * 359.72354 * 7 6 5 9 9 O 1.34803 * 119.99890 * 179.73255 * 7 6 5 10 10 C 1.45196 * 116.99818 * 179.97438 * 9 7 6 11 11 H 1.09000 * 109.47314 * 329.99846 * 10 9 7 12 12 C 1.50701 * 109.47233 * 210.00096 * 10 9 7 13 13 H 1.08003 * 119.99877 * 359.97438 * 12 10 9 14 14 C 1.37878 * 120.00434 * 180.02562 * 12 10 9 15 15 N 1.31509 * 119.99431 * 0.02562 * 14 12 10 16 16 Si 1.86792 * 120.00151 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.47220 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.47130 * 119.99910 * 16 14 12 19 19 H 1.48502 * 109.47471 * 239.99980 * 16 14 12 20 20 C 1.50703 * 109.47189 * 89.99951 * 10 9 7 21 21 C 1.34507 * 125.78834 * 219.71216 * 20 10 9 22 22 C 1.41386 * 106.84010 * 180.26118 * 21 20 10 23 23 C 1.34511 * 106.84141 * 0.02562 * 22 21 20 24 24 O 1.34304 * 125.78797 * 40.02394 * 20 10 9 25 25 C 1.50098 * 123.77753 * 359.01443 * 6 5 4 26 26 C 1.53011 * 110.13315 * 17.45298 * 25 6 5 27 27 H 1.09005 * 109.47383 * 299.60835 * 1 2 3 28 28 H 1.08998 * 109.47701 * 59.60996 * 1 2 3 29 29 H 1.09003 * 109.47103 * 179.61099 * 1 2 3 30 30 H 1.09000 * 109.36536 * 310.64004 * 4 2 1 31 31 H 1.09007 * 109.36044 * 70.36698 * 4 2 1 32 32 H 1.07998 * 118.11617 * 197.37993 * 5 4 2 33 33 H 0.97007 * 119.99674 * 180.02562 * 15 14 12 34 34 H 1.08004 * 126.58507 * 0.26980 * 21 20 10 35 35 H 1.07999 * 126.57835 * 180.02562 * 22 21 20 36 36 H 1.08000 * 125.79478 * 179.97438 * 23 22 21 37 37 H 1.08992 * 109.35954 * 137.66034 * 25 6 5 38 38 H 1.09006 * 109.36074 * 257.38927 * 25 6 5 39 39 H 1.08996 * 109.62666 * 69.94533 * 26 25 6 40 40 H 1.08998 * 109.63085 * 190.52709 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 6 2.0480 -0.7305 -1.2406 5 6 3.5279 -0.9538 -1.1266 6 6 4.1939 -0.8810 0.0067 7 6 5.6405 -1.1379 -0.0225 8 8 6.1876 -1.4133 -1.0721 9 8 6.3605 -1.0682 1.1150 10 6 7.7840 -1.3345 1.0113 11 1 7.9643 -2.0350 0.1959 12 6 8.2791 -1.9303 2.3040 13 1 7.5926 -2.0923 3.1218 14 6 9.6087 -2.2678 2.4430 15 7 10.4450 -2.0691 1.4477 16 14 10.2224 -3.0057 4.0455 17 1 9.0915 -3.1255 5.0005 18 1 10.7936 -4.3513 3.7842 19 1 11.2700 -2.1275 4.6258 20 6 8.5174 -0.0465 0.7385 21 6 9.5590 0.1033 -0.0993 22 6 9.9365 1.4647 -0.0442 23 6 9.1033 2.0653 0.8245 24 8 8.2456 1.1452 1.2951 25 6 3.5618 -0.5446 1.3259 26 6 2.0452 -0.7307 1.2459 27 1 -0.3634 0.5077 0.8935 28 1 -0.3634 0.5199 -0.8864 29 1 -0.3633 -1.0277 -0.0070 30 1 1.5402 -1.6906 -1.3331 31 1 1.8452 -0.1278 -2.1259 32 1 4.0774 -1.1922 -2.0252 33 1 11.3804 -2.3069 1.5454 34 1 10.0187 -0.6682 -0.6992 35 1 10.7396 1.9327 -0.5940 36 1 9.1209 3.1101 1.0971 37 1 3.9660 -1.1996 2.0977 38 1 3.7838 0.4921 1.5791 39 1 1.8100 -1.7924 1.1712 40 1 1.5772 -0.3109 2.1364 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001518001429.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:27 Heat of formation + Delta-G solvation = -92.860719 kcal Electronic energy + Delta-G solvation = -23241.826293 eV Core-core repulsion = 19794.236406 eV Total energy + Delta-G solvation = -3447.589887 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.20867 -41.44535 -39.39649 -37.54849 -35.32200 -33.85942 -33.57957 -31.84538 -31.49308 -28.73330 -28.01719 -25.31628 -24.04668 -23.47031 -22.39489 -21.65302 -21.15655 -19.51122 -18.70467 -18.48346 -18.26311 -17.39992 -16.81910 -16.73563 -16.35671 -15.38856 -15.18204 -15.14182 -14.76984 -14.60816 -14.13030 -13.88274 -13.69641 -13.54015 -13.48349 -13.37413 -13.11811 -13.05924 -12.86202 -12.83345 -12.42190 -12.22667 -12.05862 -11.86782 -11.43893 -11.39118 -11.15836 -11.14164 -10.83998 -10.55077 -10.12422 -9.15178 -8.26694 -6.55641 0.17375 1.06691 1.37700 1.39173 1.52440 1.86213 1.92916 2.10058 2.38375 2.40767 2.98482 3.61640 3.70322 3.95673 4.02186 4.15649 4.22940 4.30907 4.36880 4.52762 4.58828 4.61469 4.63973 4.78493 4.85366 4.97718 5.02104 5.08344 5.11511 5.14026 5.25344 5.29863 5.35140 5.38518 5.41941 5.52142 5.58748 5.63799 5.66185 5.79455 5.91567 6.45825 6.54237 6.86195 7.16288 8.70946 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.018311 B = 0.004611 C = 0.004106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.733384 B = 6071.549320 C = 6816.856044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.096 4.096 3 H 0.070 0.930 4 C -0.084 4.084 5 C -0.049 4.049 6 C -0.169 4.169 7 C 0.476 3.524 8 O -0.557 6.557 9 O -0.349 6.349 10 C 0.300 3.700 11 H 0.039 0.961 12 C -0.556 4.556 13 H 0.074 0.926 14 C 0.024 3.976 15 N -0.892 5.892 16 Si 0.983 3.017 17 H -0.262 1.262 18 H -0.270 1.270 19 H -0.276 1.276 20 C -0.005 4.005 21 C -0.193 4.193 22 C -0.227 4.227 23 C -0.070 4.070 24 O -0.195 6.195 25 C -0.074 4.074 26 C -0.107 4.107 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.107 0.893 31 H 0.103 0.897 32 H 0.110 0.890 33 H 0.271 0.729 34 H 0.121 0.879 35 H 0.167 0.833 36 H 0.241 0.759 37 H 0.066 0.934 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.208 5.958 -2.035 17.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.114 4.114 3 H 0.089 0.911 4 C -0.121 4.121 5 C -0.068 4.068 6 C -0.170 4.170 7 C 0.325 3.675 8 O -0.451 6.451 9 O -0.265 6.265 10 C 0.246 3.754 11 H 0.057 0.943 12 C -0.593 4.593 13 H 0.092 0.908 14 C -0.179 4.179 15 N -0.526 5.526 16 Si 0.805 3.195 17 H -0.185 1.185 18 H -0.195 1.195 19 H -0.201 1.201 20 C -0.055 4.055 21 C -0.212 4.212 22 C -0.246 4.246 23 C -0.137 4.137 24 O -0.092 6.092 25 C -0.111 4.111 26 C -0.145 4.145 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.125 0.875 31 H 0.122 0.878 32 H 0.128 0.872 33 H 0.080 0.920 34 H 0.139 0.861 35 H 0.185 0.815 36 H 0.257 0.743 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.089 0.911 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -16.041 5.898 -2.166 17.228 hybrid contribution 1.737 -0.602 0.203 1.849 sum -14.304 5.296 -1.964 15.379 Atomic orbital electron populations 1.21766 0.92821 1.02587 1.02548 1.21260 0.97078 0.99362 0.93745 0.91139 1.20804 0.88236 1.02938 1.00086 1.23286 0.98474 0.89220 0.95834 1.20302 0.87273 1.09926 0.99473 1.22612 0.90685 0.72657 0.81578 1.90743 1.73975 1.47368 1.33002 1.86632 1.24235 1.80222 1.35456 1.18763 0.71460 0.86346 0.98871 0.94329 1.21170 0.95558 1.43553 0.99036 0.90825 1.25853 0.95795 0.94976 1.01271 1.70180 1.04669 1.44991 1.32785 0.85136 0.78345 0.78038 0.77939 1.18543 1.19486 1.20111 1.23319 1.01302 0.85459 0.95423 1.21284 0.99465 0.96869 1.03627 1.22043 1.04185 0.93643 1.04687 1.24705 0.93118 0.95856 0.99982 1.83960 1.50539 1.17628 1.57106 1.20315 0.96753 1.01974 0.92087 1.21691 0.92139 1.01467 0.99154 0.91974 0.91669 0.91912 0.87480 0.87846 0.87173 0.91994 0.86052 0.81534 0.74278 0.91505 0.90777 0.91124 0.89553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.20 71.98 0.66 -0.87 16 2 C -0.10 -1.53 2.76 -10.67 -0.03 -1.56 16 3 H 0.07 1.22 8.12 -2.39 -0.02 1.20 16 4 C -0.08 -1.42 5.44 29.66 0.16 -1.26 16 5 C -0.05 -1.35 9.42 24.85 0.23 -1.12 16 6 C -0.17 -5.73 5.79 -18.42 -0.11 -5.84 16 7 C 0.48 22.22 7.81 70.10 0.55 22.77 16 8 O -0.56 -28.97 15.22 19.73 0.30 -28.67 16 9 O -0.35 -18.20 9.16 -55.19 -0.51 -18.71 16 10 C 0.30 17.32 2.42 29.10 0.07 17.40 16 11 H 0.04 2.47 7.15 -2.39 -0.02 2.46 16 12 C -0.56 -32.58 8.89 25.60 0.23 -32.35 16 13 H 0.07 4.23 7.81 -2.91 -0.02 4.21 16 14 C 0.02 1.36 5.30 84.66 0.45 1.81 16 15 N -0.89 -51.53 10.92 21.45 0.23 -51.30 16 16 Si 0.98 43.73 29.54 68.60 2.03 45.76 16 17 H -0.26 -11.24 7.11 99.48 0.71 -10.54 16 18 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 19 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 20 C 0.00 -0.25 5.54 24.83 0.14 -0.11 16 21 C -0.19 -10.16 9.16 22.19 0.20 -9.95 16 22 C -0.23 -9.66 10.91 22.19 0.24 -9.42 16 23 C -0.07 -2.82 12.09 66.97 0.81 -2.01 16 24 O -0.20 -9.89 10.65 -1.34 -0.01 -9.90 16 25 C -0.07 -2.10 5.45 29.66 0.16 -1.94 16 26 C -0.11 -2.05 5.29 30.72 0.16 -1.89 16 27 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 28 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.11 1.46 8.11 -2.39 -0.02 1.44 16 31 H 0.10 1.36 8.14 -2.38 -0.02 1.34 16 32 H 0.11 3.32 7.17 -2.91 -0.02 3.30 16 33 H 0.27 14.66 8.31 -92.70 -0.77 13.89 16 34 H 0.12 6.72 7.86 -2.91 -0.02 6.70 16 35 H 0.17 5.72 8.06 -2.91 -0.02 5.70 16 36 H 0.24 6.54 8.06 -2.91 -0.02 6.52 16 37 H 0.07 2.11 7.93 -2.39 -0.02 2.09 16 38 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 39 H 0.07 1.30 8.12 -2.39 -0.02 1.28 16 40 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -73.40 337.81 7.00 -66.40 By element: Atomic # 1 Polarization: 21.76 SS G_CDS: 1.03 Total: 22.79 kcal Atomic # 6 Polarization: -30.29 SS G_CDS: 3.93 Total: -26.36 kcal Atomic # 7 Polarization: -51.53 SS G_CDS: 0.23 Total: -51.30 kcal Atomic # 8 Polarization: -57.06 SS G_CDS: -0.22 Total: -57.28 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -73.40 7.00 -66.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001518001429.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.465 kcal (2) G-P(sol) polarization free energy of solvation -73.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds