Wall clock time and date at job start Tue Mar 31 2020 06:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09006 * 109.62552 * 2 1 4 4 C 1.53009 * 109.62782 * 120.38410 * 2 1 3 5 5 C 1.50096 * 110.13125 * 169.67037 * 4 2 1 6 6 C 1.31645 * 123.77883 * 342.80499 * 5 4 2 7 7 C 1.46956 * 118.10689 * 180.42141 * 6 5 4 8 8 O 1.21529 * 119.99986 * 0.02562 * 7 6 5 9 9 O 1.34799 * 119.99652 * 179.97438 * 7 6 5 10 10 C 1.45198 * 117.00102 * 180.02562 * 9 7 6 11 11 H 1.09008 * 109.46823 * 330.00168 * 10 9 7 12 12 C 1.50700 * 109.47264 * 90.00002 * 10 9 7 13 13 H 1.08001 * 120.00327 * 240.00648 * 12 10 9 14 14 C 1.37877 * 119.99673 * 59.99855 * 12 10 9 15 15 N 1.31513 * 120.00298 * 0.02562 * 14 12 10 16 16 Si 1.86798 * 119.99915 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47188 * 0.02562 * 16 14 12 18 18 H 1.48507 * 109.47050 * 120.00527 * 16 14 12 19 19 H 1.48498 * 109.47286 * 240.00587 * 16 14 12 20 20 C 1.50697 * 109.47183 * 210.00367 * 10 9 7 21 21 C 1.34516 * 125.78915 * 144.99944 * 20 10 9 22 22 C 1.41380 * 106.84150 * 179.97438 * 21 20 10 23 23 C 1.34518 * 106.84211 * 359.97438 * 22 21 20 24 24 O 1.34302 * 108.41721 * 359.73897 * 23 22 21 25 25 C 1.50088 * 123.77982 * 0.70432 * 6 5 4 26 26 C 1.53157 * 110.04991 * 342.39567 * 25 6 5 27 27 H 1.09001 * 109.47269 * 299.61680 * 1 2 3 28 28 H 1.08998 * 109.46814 * 59.61425 * 1 2 3 29 29 H 1.08998 * 109.46814 * 179.61259 * 1 2 3 30 30 H 1.09001 * 109.36031 * 49.46486 * 4 2 1 31 31 H 1.09003 * 109.35886 * 289.86686 * 4 2 1 32 32 H 1.08004 * 118.10641 * 162.83108 * 5 4 2 33 33 H 0.96997 * 120.00027 * 179.97438 * 15 14 12 34 34 H 1.08000 * 126.57789 * 359.96690 * 21 20 10 35 35 H 1.08002 * 126.58497 * 179.97438 * 22 21 20 36 36 H 1.07994 * 125.79340 * 180.02562 * 23 22 21 37 37 H 1.09003 * 109.36098 * 102.77243 * 25 6 5 38 38 H 1.08999 * 109.36254 * 222.36512 * 25 6 5 39 39 H 1.09004 * 109.80736 * 290.35239 * 26 25 6 40 40 H 1.09004 * 109.73857 * 169.79009 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8962 1.0267 0.0000 4 6 2.0440 -0.7289 1.2432 5 6 3.5234 -0.9575 1.1334 6 6 4.1939 -0.8813 0.0031 7 6 5.6404 -1.1381 0.0374 8 8 6.1841 -1.4121 1.0892 9 8 6.3640 -1.0708 -1.0979 10 6 7.7873 -1.3368 -0.9892 11 1 8.1385 -1.0371 -0.0018 12 6 8.0396 -2.8094 -1.1865 13 1 8.5050 -3.3874 -0.4019 14 6 7.6761 -3.4187 -2.3687 15 7 7.1096 -2.7148 -3.3244 16 14 7.9895 -5.2438 -2.6136 17 1 8.6338 -5.8030 -1.3981 18 1 6.6997 -5.9396 -2.8543 19 1 8.8835 -5.4401 -3.7830 20 6 8.5264 -0.5547 -2.0442 21 6 9.7459 -0.0042 -1.9053 22 6 10.0514 0.6294 -3.1317 23 6 9.0005 0.4279 -3.9469 24 8 8.0825 -0.2951 -3.2849 25 6 3.5672 -0.5412 -1.3176 26 6 2.0494 -0.7322 -1.2433 27 1 -0.3634 0.5079 0.8934 28 1 -0.3633 0.5198 -0.8865 29 1 -0.3633 -1.0276 -0.0069 30 1 1.5359 -1.6889 1.3352 31 1 1.8362 -0.1261 2.1273 32 1 4.0692 -1.1988 2.0336 33 1 6.8543 -3.1434 -4.1562 34 1 10.3716 -0.0395 -1.0257 35 1 10.9550 1.1714 -3.3687 36 1 8.9121 0.7829 -4.9630 37 1 3.7924 0.4955 -1.5682 38 1 3.9743 -1.1941 -2.0896 39 1 1.8139 -1.7939 -1.1681 40 1 1.5818 -0.3159 -2.1356 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001518001430.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:30 Heat of formation + Delta-G solvation = -71.664650 kcal Electronic energy + Delta-G solvation = -23472.009909 eV Core-core repulsion = 20025.339153 eV Total energy + Delta-G solvation = -3446.670757 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.29462 -39.52787 -37.99053 -35.40355 -32.98144 -32.55943 -31.81481 -30.58118 -29.78655 -27.14781 -26.39619 -23.51055 -22.86261 -21.83583 -20.64638 -20.15702 -19.42955 -17.68456 -17.04396 -16.52812 -16.47424 -15.33537 -14.96963 -14.56610 -14.42373 -14.33513 -14.04416 -13.71419 -13.30110 -13.04530 -12.63810 -12.58130 -12.20038 -11.99254 -11.83768 -11.74720 -11.57430 -11.45251 -11.30633 -11.05131 -10.99543 -10.65890 -10.40559 -10.33521 -10.11565 -9.79919 -9.42840 -9.03887 -8.81513 -8.76147 -8.69062 -7.32399 -6.20792 -4.42311 1.80630 2.93055 3.19724 3.27831 3.33134 3.60080 3.83196 3.98082 4.27053 4.28447 4.73754 4.83833 4.92823 5.12630 5.28494 5.47177 5.52683 5.54867 5.60659 5.68378 5.76108 5.86329 5.91204 5.96902 5.99595 6.03506 6.20214 6.22370 6.38705 6.43861 6.50090 6.52092 6.74890 6.82387 6.89714 7.08500 7.23125 7.50168 7.64173 7.78339 7.83611 8.42899 8.60861 9.00472 9.31509 10.78337 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.015494 B = 0.005257 C = 0.004667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.704157 B = 5324.909565 C = 5998.642332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.097 4.097 3 H 0.073 0.927 4 C -0.084 4.084 5 C -0.097 4.097 6 C -0.130 4.130 7 C 0.491 3.509 8 O -0.534 6.534 9 O -0.326 6.326 10 C 0.278 3.722 11 H 0.070 0.930 12 C -0.548 4.548 13 H 0.074 0.926 14 C 0.081 3.919 15 N -0.826 5.826 16 Si 0.896 3.104 17 H -0.269 1.269 18 H -0.280 1.280 19 H -0.280 1.280 20 C 0.083 3.917 21 C -0.265 4.265 22 C -0.221 4.221 23 C -0.082 4.082 24 O -0.116 6.116 25 C -0.078 4.078 26 C -0.113 4.113 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.122 0.878 33 H 0.266 0.734 34 H 0.132 0.868 35 H 0.130 0.870 36 H 0.183 0.817 37 H 0.075 0.925 38 H 0.092 0.908 39 H 0.064 0.936 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.277 6.024 2.038 11.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.116 4.116 3 H 0.092 0.908 4 C -0.121 4.121 5 C -0.115 4.115 6 C -0.132 4.132 7 C 0.336 3.664 8 O -0.428 6.428 9 O -0.241 6.241 10 C 0.225 3.775 11 H 0.088 0.912 12 C -0.584 4.584 13 H 0.092 0.908 14 C -0.130 4.130 15 N -0.459 5.459 16 Si 0.722 3.278 17 H -0.193 1.193 18 H -0.205 1.205 19 H -0.206 1.206 20 C 0.029 3.971 21 C -0.285 4.285 22 C -0.240 4.240 23 C -0.152 4.152 24 O -0.008 6.008 25 C -0.115 4.115 26 C -0.151 4.151 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.098 0.902 31 H 0.094 0.906 32 H 0.140 0.860 33 H 0.076 0.924 34 H 0.150 0.850 35 H 0.148 0.852 36 H 0.199 0.801 37 H 0.094 0.906 38 H 0.110 0.890 39 H 0.083 0.917 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.428 5.858 1.978 11.275 hybrid contribution 0.777 -1.045 -0.262 1.328 sum -8.651 4.813 1.716 10.047 Atomic orbital electron populations 1.21819 0.95184 1.01749 1.01506 1.21255 0.95242 0.99912 0.95160 0.90831 1.20576 0.92150 1.00987 0.98369 1.22802 0.95857 0.95133 0.97728 1.20376 0.91187 1.04847 0.96747 1.21280 0.88530 0.73824 0.82741 1.90711 1.73057 1.46479 1.32549 1.86821 1.25118 1.78682 1.33480 1.18789 0.74861 0.93651 0.90151 0.91229 1.21285 1.43081 0.91923 1.02093 0.90792 1.25147 0.93549 0.98824 0.95438 1.70056 1.35375 1.35522 1.04940 0.86464 0.78257 0.84504 0.78537 1.19289 1.20532 1.20559 1.22818 0.94788 0.95148 0.84332 1.21162 0.98498 1.08646 1.00155 1.21489 1.00357 1.07132 0.95068 1.23782 0.91134 1.01363 0.98879 1.84415 1.40475 1.53351 1.22527 1.20346 0.93906 1.02667 0.94607 1.21705 0.95458 1.00619 0.97279 0.92840 0.92646 0.92691 0.90153 0.90570 0.86048 0.92382 0.84969 0.85189 0.80051 0.90619 0.88959 0.91732 0.91510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.20 37.16 0.34 -0.93 16 2 C -0.10 -1.07 2.76 -90.43 -0.25 -1.31 16 3 H 0.07 0.82 8.12 -51.93 -0.42 0.40 16 4 C -0.08 -0.96 5.43 -28.17 -0.15 -1.12 16 5 C -0.10 -1.50 9.42 -36.47 -0.34 -1.85 16 6 C -0.13 -2.40 5.78 -103.26 -0.60 -2.99 16 7 C 0.49 11.42 7.81 34.26 0.27 11.68 16 8 O -0.53 -13.38 15.22 -19.29 -0.29 -13.68 16 9 O -0.33 -8.34 8.56 -43.52 -0.37 -8.72 16 10 C 0.28 7.32 2.58 -29.04 -0.07 7.24 16 11 H 0.07 1.81 7.16 -51.92 -0.37 1.44 16 12 C -0.55 -15.26 8.91 -34.44 -0.31 -15.57 16 13 H 0.07 2.06 7.81 -52.49 -0.41 1.65 16 14 C 0.08 2.20 5.24 -17.82 -0.09 2.11 16 15 N -0.83 -22.70 10.62 55.43 0.59 -22.11 16 16 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 17 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 C 0.08 2.08 5.59 -35.63 -0.20 1.88 16 21 C -0.27 -5.96 10.81 -39.70 -0.43 -6.39 16 22 C -0.22 -4.42 10.91 -39.70 -0.43 -4.85 16 23 C -0.08 -1.69 12.09 29.42 0.36 -1.33 16 24 O -0.12 -2.89 8.87 2.24 0.02 -2.87 16 25 C -0.08 -1.28 5.45 -28.10 -0.15 -1.43 16 26 C -0.11 -1.43 5.31 -26.47 -0.14 -1.57 16 27 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.85 8.11 -51.93 -0.42 0.43 16 31 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.12 1.99 7.17 -52.48 -0.38 1.61 16 33 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 34 H 0.13 2.71 8.06 -52.49 -0.42 2.28 16 35 H 0.13 2.15 8.06 -52.49 -0.42 1.72 16 36 H 0.18 2.92 8.06 -52.49 -0.42 2.49 16 37 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.09 1.75 7.92 -51.93 -0.41 1.34 16 39 H 0.06 0.83 8.12 -51.93 -0.42 0.41 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 337.15 15.07 5.08 5.08 Total: -1.00 -30.93 337.15 -7.98 -38.91 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -5.77 Total: 3.84 kcal Atomic # 6 Polarization: -14.23 SS G_CDS: -2.21 Total: -16.44 kcal Atomic # 7 Polarization: -22.70 SS G_CDS: 0.59 Total: -22.11 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: -0.65 Total: -25.26 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.93 -7.98 -38.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001518001430.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.754 kcal (2) G-P(sol) polarization free energy of solvation -30.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds