Wall clock time and date at job start Tue Mar 31 2020 06:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09006 * 109.62552 * 2 1 4 4 C 1.53009 * 109.62782 * 120.38410 * 2 1 3 5 5 C 1.50096 * 110.13125 * 169.67037 * 4 2 1 6 6 C 1.31645 * 123.77883 * 342.80499 * 5 4 2 7 7 C 1.46956 * 118.10689 * 180.42141 * 6 5 4 8 8 O 1.21529 * 119.99986 * 0.02562 * 7 6 5 9 9 O 1.34799 * 119.99652 * 179.97438 * 7 6 5 10 10 C 1.45198 * 117.00102 * 180.02562 * 9 7 6 11 11 H 1.09008 * 109.46823 * 330.00168 * 10 9 7 12 12 C 1.50700 * 109.47264 * 90.00002 * 10 9 7 13 13 H 1.08001 * 120.00327 * 240.00648 * 12 10 9 14 14 C 1.37877 * 119.99673 * 59.99855 * 12 10 9 15 15 N 1.31513 * 120.00298 * 0.02562 * 14 12 10 16 16 Si 1.86798 * 119.99915 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47188 * 0.02562 * 16 14 12 18 18 H 1.48507 * 109.47050 * 120.00527 * 16 14 12 19 19 H 1.48498 * 109.47286 * 240.00587 * 16 14 12 20 20 C 1.50697 * 109.47183 * 210.00367 * 10 9 7 21 21 C 1.34516 * 125.78915 * 144.99944 * 20 10 9 22 22 C 1.41380 * 106.84150 * 179.97438 * 21 20 10 23 23 C 1.34518 * 106.84211 * 359.97438 * 22 21 20 24 24 O 1.34302 * 108.41721 * 359.73897 * 23 22 21 25 25 C 1.50088 * 123.77982 * 0.70432 * 6 5 4 26 26 C 1.53157 * 110.04991 * 342.39567 * 25 6 5 27 27 H 1.09001 * 109.47269 * 299.61680 * 1 2 3 28 28 H 1.08998 * 109.46814 * 59.61425 * 1 2 3 29 29 H 1.08998 * 109.46814 * 179.61259 * 1 2 3 30 30 H 1.09001 * 109.36031 * 49.46486 * 4 2 1 31 31 H 1.09003 * 109.35886 * 289.86686 * 4 2 1 32 32 H 1.08004 * 118.10641 * 162.83108 * 5 4 2 33 33 H 0.96997 * 120.00027 * 179.97438 * 15 14 12 34 34 H 1.08000 * 126.57789 * 359.96690 * 21 20 10 35 35 H 1.08002 * 126.58497 * 179.97438 * 22 21 20 36 36 H 1.07994 * 125.79340 * 180.02562 * 23 22 21 37 37 H 1.09003 * 109.36098 * 102.77243 * 25 6 5 38 38 H 1.08999 * 109.36254 * 222.36512 * 25 6 5 39 39 H 1.09004 * 109.80736 * 290.35239 * 26 25 6 40 40 H 1.09004 * 109.73857 * 169.79009 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8962 1.0267 0.0000 4 6 2.0440 -0.7289 1.2432 5 6 3.5234 -0.9575 1.1334 6 6 4.1939 -0.8813 0.0031 7 6 5.6404 -1.1381 0.0374 8 8 6.1841 -1.4121 1.0892 9 8 6.3640 -1.0708 -1.0979 10 6 7.7873 -1.3368 -0.9892 11 1 8.1385 -1.0371 -0.0018 12 6 8.0396 -2.8094 -1.1865 13 1 8.5050 -3.3874 -0.4019 14 6 7.6761 -3.4187 -2.3687 15 7 7.1096 -2.7148 -3.3244 16 14 7.9895 -5.2438 -2.6136 17 1 8.6338 -5.8030 -1.3981 18 1 6.6997 -5.9396 -2.8543 19 1 8.8835 -5.4401 -3.7830 20 6 8.5264 -0.5547 -2.0442 21 6 9.7459 -0.0042 -1.9053 22 6 10.0514 0.6294 -3.1317 23 6 9.0005 0.4279 -3.9469 24 8 8.0825 -0.2951 -3.2849 25 6 3.5672 -0.5412 -1.3176 26 6 2.0494 -0.7322 -1.2433 27 1 -0.3634 0.5079 0.8934 28 1 -0.3633 0.5198 -0.8865 29 1 -0.3633 -1.0276 -0.0069 30 1 1.5359 -1.6889 1.3352 31 1 1.8362 -0.1261 2.1273 32 1 4.0692 -1.1988 2.0336 33 1 6.8543 -3.1434 -4.1562 34 1 10.3716 -0.0395 -1.0257 35 1 10.9550 1.1714 -3.3687 36 1 8.9121 0.7829 -4.9630 37 1 3.7924 0.4955 -1.5682 38 1 3.9743 -1.1941 -2.0896 39 1 1.8139 -1.7939 -1.1681 40 1 1.5818 -0.3159 -2.1356 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001518001430.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:30 Heat of formation + Delta-G solvation = -87.496010 kcal Electronic energy + Delta-G solvation = -23472.696409 eV Core-core repulsion = 20025.339153 eV Total energy + Delta-G solvation = -3447.357256 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.05730 -41.21034 -39.30635 -37.29948 -34.95996 -33.79641 -33.56680 -31.83335 -31.54362 -28.54163 -27.95436 -25.33508 -24.03619 -23.34740 -22.27701 -21.43625 -21.21991 -19.25478 -18.79213 -18.25797 -18.13336 -17.14955 -16.90377 -16.33176 -16.26380 -15.35264 -15.30867 -15.13534 -14.64860 -14.51018 -14.09145 -13.78897 -13.57034 -13.49357 -13.38980 -13.22121 -13.06787 -13.01259 -12.85136 -12.83534 -12.42677 -12.22634 -11.88803 -11.77672 -11.43980 -11.14223 -11.13464 -10.98583 -10.80805 -10.51017 -10.05224 -9.09716 -8.24417 -6.55396 0.31576 1.16851 1.33607 1.35362 1.46654 1.90013 2.10339 2.27056 2.31306 2.57702 3.05985 3.68961 3.75383 3.95540 4.07952 4.22819 4.27373 4.34810 4.38971 4.45777 4.58079 4.62355 4.65462 4.79781 4.86437 4.98692 5.03714 5.09335 5.11891 5.15579 5.21226 5.28093 5.35713 5.41558 5.54142 5.54358 5.58175 5.71808 5.78232 5.87462 5.94099 6.48195 6.69649 7.08860 7.23629 8.73541 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.015494 B = 0.005257 C = 0.004667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.704157 B = 5324.909565 C = 5998.642332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.093 4.093 3 H 0.073 0.927 4 C -0.083 4.083 5 C -0.058 4.058 6 C -0.168 4.168 7 C 0.478 3.522 8 O -0.566 6.566 9 O -0.339 6.339 10 C 0.276 3.724 11 H 0.053 0.947 12 C -0.578 4.578 13 H 0.058 0.942 14 C 0.042 3.958 15 N -0.843 5.843 16 Si 0.956 3.044 17 H -0.271 1.271 18 H -0.272 1.272 19 H -0.270 1.270 20 C 0.042 3.958 21 C -0.266 4.266 22 C -0.218 4.218 23 C -0.081 4.081 24 O -0.145 6.145 25 C -0.069 4.069 26 C -0.107 4.107 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.101 0.899 31 H 0.106 0.894 32 H 0.111 0.889 33 H 0.269 0.731 34 H 0.144 0.856 35 H 0.171 0.829 36 H 0.226 0.774 37 H 0.073 0.927 38 H 0.054 0.946 39 H 0.063 0.937 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.867 6.594 1.553 12.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.112 4.112 3 H 0.091 0.909 4 C -0.120 4.120 5 C -0.077 4.077 6 C -0.169 4.169 7 C 0.326 3.674 8 O -0.462 6.462 9 O -0.254 6.254 10 C 0.223 3.777 11 H 0.071 0.929 12 C -0.614 4.614 13 H 0.076 0.924 14 C -0.166 4.166 15 N -0.476 5.476 16 Si 0.780 3.220 17 H -0.195 1.195 18 H -0.197 1.197 19 H -0.195 1.195 20 C -0.011 4.011 21 C -0.285 4.285 22 C -0.237 4.237 23 C -0.150 4.150 24 O -0.038 6.038 25 C -0.106 4.106 26 C -0.144 4.144 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.119 0.881 31 H 0.124 0.876 32 H 0.129 0.871 33 H 0.078 0.922 34 H 0.162 0.838 35 H 0.189 0.811 36 H 0.242 0.758 37 H 0.091 0.909 38 H 0.073 0.927 39 H 0.082 0.918 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -11.026 6.441 1.491 12.856 hybrid contribution 1.286 -1.128 -0.034 1.711 sum -9.740 5.313 1.457 11.190 Atomic orbital electron populations 1.21767 0.92804 1.02469 1.02633 1.21246 0.97054 0.99362 0.93532 0.90876 1.20775 0.88498 1.02681 1.00011 1.23216 0.98256 0.90254 0.95939 1.20378 0.88423 1.09151 0.98945 1.22302 0.90456 0.72831 0.81807 1.90665 1.74095 1.48263 1.33167 1.86802 1.24881 1.78994 1.34680 1.18627 0.75312 0.93540 0.90189 0.92872 1.21398 1.44491 0.93103 1.02451 0.92370 1.25798 0.93180 1.02732 0.94912 1.70163 1.35490 1.36868 1.05070 0.85544 0.78428 0.79583 0.78431 1.19523 1.19721 1.19493 1.22682 0.95918 0.97665 0.84822 1.21550 0.97540 1.07682 1.01728 1.21897 1.01666 1.06653 0.93458 1.24738 0.90211 0.99685 1.00325 1.84351 1.42226 1.54553 1.22658 1.20234 0.96540 1.01500 0.92341 1.21691 0.92332 1.01087 0.99305 0.91339 0.92013 0.92169 0.88079 0.87589 0.87071 0.92189 0.83811 0.81139 0.75769 0.90863 0.92723 0.91831 0.89879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.20 71.98 0.66 -1.22 16 2 C -0.09 -1.77 2.76 -10.67 -0.03 -1.80 16 3 H 0.07 1.43 8.12 -2.38 -0.02 1.41 16 4 C -0.08 -1.64 5.43 29.66 0.16 -1.48 16 5 C -0.06 -1.77 9.42 24.85 0.23 -1.53 16 6 C -0.17 -6.38 5.78 -18.41 -0.11 -6.48 16 7 C 0.48 23.68 7.81 70.11 0.55 24.23 16 8 O -0.57 -30.22 15.22 19.74 0.30 -29.92 16 9 O -0.34 -18.52 8.56 -54.47 -0.47 -18.98 16 10 C 0.28 15.48 2.58 29.10 0.08 15.56 16 11 H 0.05 3.02 7.16 -2.38 -0.02 3.00 16 12 C -0.58 -33.98 8.91 25.60 0.23 -33.75 16 13 H 0.06 3.46 7.81 -2.91 -0.02 3.44 16 14 C 0.04 2.38 5.24 84.65 0.44 2.82 16 15 N -0.84 -47.71 10.62 21.45 0.23 -47.48 16 16 Si 0.96 44.01 29.54 68.60 2.03 46.04 16 17 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 18 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 19 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 20 C 0.04 2.19 5.59 24.83 0.14 2.33 16 21 C -0.27 -12.04 10.81 22.19 0.24 -11.81 16 22 C -0.22 -8.31 10.91 22.19 0.24 -8.06 16 23 C -0.08 -3.22 12.09 66.97 0.81 -2.41 16 24 O -0.14 -7.35 8.87 0.83 0.01 -7.35 16 25 C -0.07 -2.33 5.45 29.71 0.16 -2.16 16 26 C -0.11 -2.55 5.31 30.76 0.16 -2.39 16 27 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.10 1.73 8.11 -2.39 -0.02 1.72 16 31 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.11 3.63 7.17 -2.91 -0.02 3.61 16 33 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 34 H 0.14 5.97 8.06 -2.91 -0.02 5.95 16 35 H 0.17 5.00 8.06 -2.91 -0.02 4.97 16 36 H 0.23 6.53 8.06 -2.91 -0.02 6.50 16 37 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 38 H 0.05 2.21 7.92 -2.39 -0.02 2.19 16 39 H 0.06 1.53 8.12 -2.38 -0.02 1.51 16 40 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -71.53 337.15 7.09 -64.44 By element: Atomic # 1 Polarization: 20.39 SS G_CDS: 1.03 Total: 21.42 kcal Atomic # 6 Polarization: -32.14 SS G_CDS: 3.97 Total: -28.16 kcal Atomic # 7 Polarization: -47.71 SS G_CDS: 0.23 Total: -47.48 kcal Atomic # 8 Polarization: -56.09 SS G_CDS: -0.16 Total: -56.25 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -71.53 7.09 -64.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001518001430.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.057 kcal (2) G-P(sol) polarization free energy of solvation -71.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds