Wall clock time and date at job start Tue Mar 31 2020 06:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.63023 * 2 1 4 4 C 1.53006 * 109.78765 * 120.49167 * 2 1 3 5 5 C 1.50094 * 110.19181 * 169.35843 * 4 2 1 6 6 C 1.31655 * 123.77716 * 343.31448 * 5 4 2 7 7 C 1.46951 * 118.10818 * 180.14651 * 6 5 4 8 8 O 1.21534 * 119.99923 * 359.73348 * 7 6 5 9 9 O 1.34793 * 119.99977 * 179.73836 * 7 6 5 10 10 C 1.45196 * 117.00180 * 179.97438 * 9 7 6 11 11 H 1.08997 * 109.47159 * 329.99903 * 10 9 7 12 12 C 1.50709 * 109.47282 * 210.00002 * 10 9 7 13 13 H 1.07998 * 119.99597 * 359.97438 * 12 10 9 14 14 C 1.37874 * 119.99915 * 180.02562 * 12 10 9 15 15 N 1.31510 * 120.00201 * 359.97438 * 14 12 10 16 16 Si 1.86801 * 119.99900 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47128 * 59.98972 * 16 14 12 18 18 H 1.48493 * 109.47314 * 179.97438 * 16 14 12 19 19 H 1.48509 * 109.46898 * 299.99317 * 16 14 12 20 20 C 1.50697 * 109.47529 * 89.99888 * 10 9 7 21 21 C 1.34511 * 125.79278 * 220.00341 * 20 10 9 22 22 C 1.41386 * 106.84141 * 180.02562 * 21 20 10 23 23 C 1.34507 * 106.84010 * 0.02562 * 22 21 20 24 24 O 1.34304 * 108.42311 * 359.97438 * 23 22 21 25 25 C 1.50086 * 123.77741 * 359.86315 * 6 5 4 26 26 C 1.53012 * 110.13864 * 343.10957 * 25 6 5 27 27 H 1.08996 * 109.47557 * 180.38986 * 1 2 3 28 28 H 1.09007 * 109.47299 * 300.39549 * 1 2 3 29 29 H 1.09004 * 109.47127 * 60.39022 * 1 2 3 30 30 H 1.08998 * 109.36116 * 289.76494 * 4 2 1 31 31 H 1.09004 * 109.36326 * 49.49470 * 4 2 1 32 32 H 1.08000 * 118.11275 * 163.03548 * 5 4 2 33 33 H 0.97001 * 119.99955 * 180.02562 * 15 14 12 34 34 H 1.07999 * 126.58024 * 359.97438 * 21 20 10 35 35 H 1.08004 * 126.57483 * 179.97438 * 22 21 20 36 36 H 1.08004 * 125.79019 * 180.26381 * 23 22 21 37 37 H 1.09001 * 109.35996 * 103.31379 * 25 6 5 38 38 H 1.09001 * 109.36402 * 222.90285 * 25 6 5 39 39 H 1.08998 * 109.62850 * 169.46542 * 26 25 6 40 40 H 1.08998 * 109.62710 * 290.05371 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8962 1.0266 0.0000 4 6 2.0480 -0.7305 1.2406 5 6 3.5261 -0.9642 1.1248 6 6 4.1939 -0.8810 -0.0068 7 6 5.6404 -1.1381 0.0224 8 8 6.1876 -1.4134 1.0721 9 8 6.3604 -1.0684 -1.1149 10 6 7.7842 -1.3337 -1.0112 11 1 8.1384 -1.0354 -0.0245 12 6 8.5197 -0.5494 -2.0672 13 1 7.9717 0.0847 -2.7485 14 6 9.8919 -0.6421 -2.1642 15 7 10.5590 -1.4146 -1.3349 16 14 10.8035 0.3306 -3.4727 17 1 10.5550 1.7811 -3.2743 18 1 12.2596 0.0592 -3.3666 19 1 10.3206 -0.0750 -4.8173 20 6 8.0369 -2.8057 -1.2116 21 6 8.9185 -3.5534 -0.5238 22 6 8.8277 -4.8683 -1.0356 23 6 7.8965 -4.8453 -2.0059 24 8 7.4207 -3.5935 -2.1080 25 6 3.5618 -0.5447 -1.3259 26 6 2.0452 -0.7308 -1.2460 27 1 -0.3634 -1.0276 0.0070 28 1 -0.3634 0.5200 0.8865 29 1 -0.3633 0.5078 -0.8935 30 1 1.8431 -0.1289 2.1261 31 1 1.5419 -1.6916 1.3317 32 1 4.0742 -1.2106 2.0222 33 1 11.5244 -1.4796 -1.4030 34 1 9.5711 -3.2143 0.2670 35 1 9.3974 -5.7262 -0.7104 36 1 7.5811 -5.6911 -2.5989 37 1 3.7858 0.4912 -1.5802 38 1 3.9661 -1.1997 -2.0977 39 1 1.5773 -0.3109 -2.1364 40 1 1.8100 -1.7925 -1.1713 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001518001432.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:35 Heat of formation + Delta-G solvation = -76.217642 kcal Electronic energy + Delta-G solvation = -23242.759844 eV Core-core repulsion = 19795.891655 eV Total energy + Delta-G solvation = -3446.868189 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.32869 -39.82004 -38.22422 -35.70598 -33.30080 -32.77685 -31.69463 -30.77744 -29.62186 -27.30423 -26.52558 -23.52155 -23.01824 -21.96489 -20.67183 -20.37367 -19.35772 -17.94459 -17.19716 -16.63103 -16.57913 -15.54393 -15.06498 -14.85122 -14.51761 -14.46507 -14.26638 -13.62392 -13.54282 -12.95566 -12.93639 -12.66123 -12.29653 -12.19105 -11.94839 -11.73699 -11.64737 -11.55010 -11.27150 -11.12489 -10.95032 -10.81327 -10.58414 -10.37511 -10.28245 -10.05885 -9.64683 -9.38446 -8.92582 -8.80339 -8.63336 -7.24406 -6.20004 -4.37934 1.56103 2.88837 3.24155 3.27345 3.29277 3.53183 3.57912 3.97157 4.21065 4.28926 4.58827 4.70417 4.80077 5.07966 5.09814 5.28609 5.40373 5.43397 5.47694 5.55284 5.60798 5.76848 5.82361 5.85679 5.92129 6.06402 6.07928 6.11946 6.14864 6.34754 6.37718 6.55171 6.72512 6.84046 7.00003 7.16236 7.24669 7.39619 7.70779 7.71330 7.87302 8.37332 8.53283 8.79929 9.28794 10.78902 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.018278 B = 0.004603 C = 0.004111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.540544 B = 6081.404185 C = 6808.557510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.098 4.098 3 H 0.075 0.925 4 C -0.086 4.086 5 C -0.085 4.085 6 C -0.138 4.138 7 C 0.487 3.513 8 O -0.520 6.520 9 O -0.341 6.341 10 C 0.297 3.703 11 H 0.078 0.922 12 C -0.531 4.531 13 H 0.077 0.923 14 C 0.070 3.930 15 N -0.868 5.868 16 Si 0.914 3.086 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.273 1.273 20 C 0.027 3.973 21 C -0.179 4.179 22 C -0.217 4.217 23 C -0.089 4.089 24 O -0.177 6.177 25 C -0.079 4.079 26 C -0.114 4.114 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.124 0.876 33 H 0.269 0.731 34 H 0.141 0.859 35 H 0.130 0.870 36 H 0.184 0.816 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.069 0.931 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.277 -0.169 1.795 15.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.116 4.116 3 H 0.094 0.906 4 C -0.123 4.123 5 C -0.104 4.104 6 C -0.139 4.139 7 C 0.332 3.668 8 O -0.412 6.412 9 O -0.257 6.257 10 C 0.244 3.756 11 H 0.095 0.905 12 C -0.568 4.568 13 H 0.095 0.905 14 C -0.136 4.136 15 N -0.503 5.503 16 Si 0.740 3.260 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.198 1.198 20 C -0.024 4.024 21 C -0.199 4.199 22 C -0.237 4.237 23 C -0.156 4.156 24 O -0.073 6.073 25 C -0.116 4.116 26 C -0.151 4.151 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.098 0.902 31 H 0.101 0.899 32 H 0.142 0.858 33 H 0.079 0.921 34 H 0.158 0.842 35 H 0.148 0.852 36 H 0.201 0.799 37 H 0.098 0.902 38 H 0.104 0.896 39 H 0.087 0.913 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -15.076 -0.221 1.925 15.200 hybrid contribution 1.236 0.002 -0.507 1.336 sum -13.840 -0.219 1.418 13.914 Atomic orbital electron populations 1.21818 0.95001 1.01797 1.01668 1.21257 0.95416 1.00012 0.94937 0.90643 1.20608 0.91861 1.01150 0.98652 1.22886 0.96088 0.93772 0.97606 1.20262 0.90472 1.06039 0.97108 1.21502 0.88774 0.73809 0.82740 1.90784 1.72696 1.45353 1.32324 1.86642 1.25413 1.79569 1.34092 1.19169 0.72192 0.83660 1.00573 0.90458 1.20849 0.91267 1.27149 1.17531 0.90477 1.24938 0.96987 0.95173 0.96507 1.70025 1.08420 1.35917 1.35897 0.86293 0.78198 0.80141 0.81342 1.19724 1.20940 1.19842 1.23550 0.96323 0.93342 0.89163 1.21207 1.02641 0.91384 1.04636 1.21684 1.02512 0.98446 1.01060 1.23596 1.01834 0.86485 1.03731 1.83990 1.54743 1.18243 1.50330 1.20336 0.94198 1.02916 0.94156 1.21694 0.95178 1.00712 0.97553 0.92662 0.92742 0.92547 0.90200 0.89938 0.85840 0.92120 0.84153 0.85157 0.79905 0.90166 0.89573 0.91270 0.91668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.20 37.16 0.34 -0.74 16 2 C -0.10 -0.92 2.76 -90.43 -0.25 -1.17 16 3 H 0.08 0.74 8.12 -51.93 -0.42 0.32 16 4 C -0.09 -0.86 5.43 -28.17 -0.15 -1.01 16 5 C -0.08 -1.18 9.42 -36.47 -0.34 -1.53 16 6 C -0.14 -2.27 5.79 -103.26 -0.60 -2.87 16 7 C 0.49 10.61 7.81 34.26 0.27 10.87 16 8 O -0.52 -12.55 15.22 -19.29 -0.29 -12.85 16 9 O -0.34 -8.28 9.16 -42.78 -0.39 -8.67 16 10 C 0.30 8.03 2.42 -29.03 -0.07 7.96 16 11 H 0.08 2.24 7.15 -51.93 -0.37 1.87 16 12 C -0.53 -14.81 8.89 -34.44 -0.31 -15.11 16 13 H 0.08 2.10 7.81 -52.49 -0.41 1.69 16 14 C 0.07 1.90 5.30 -17.82 -0.09 1.81 16 15 N -0.87 -24.24 10.95 55.43 0.61 -23.63 16 16 Si 0.91 21.03 29.54 -169.99 -5.02 16.01 16 17 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 20 C 0.03 0.72 5.53 -35.63 -0.20 0.53 16 21 C -0.18 -4.55 9.17 -39.70 -0.36 -4.91 16 22 C -0.22 -4.74 10.91 -39.70 -0.43 -5.18 16 23 C -0.09 -1.87 12.09 29.41 0.36 -1.52 16 24 O -0.18 -4.42 10.65 4.48 0.05 -4.37 16 25 C -0.08 -1.11 5.45 -28.17 -0.15 -1.26 16 26 C -0.11 -1.20 5.29 -26.54 -0.14 -1.34 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.36 8.14 -51.92 -0.42 -0.06 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.08 0.74 8.11 -51.93 -0.42 0.32 16 32 H 0.12 1.84 7.17 -52.49 -0.38 1.46 16 33 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 34 H 0.14 3.64 7.87 -52.49 -0.41 3.23 16 35 H 0.13 2.40 8.06 -52.48 -0.42 1.98 16 36 H 0.18 2.91 8.06 -52.48 -0.42 2.49 16 37 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.09 1.31 7.93 -51.93 -0.41 0.90 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.68 8.12 -51.93 -0.42 0.26 16 LS Contribution 337.85 15.07 5.09 5.09 Total: -1.00 -31.29 337.85 -7.86 -39.15 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -5.76 Total: 4.73 kcal Atomic # 6 Polarization: -13.33 SS G_CDS: -2.14 Total: -15.47 kcal Atomic # 7 Polarization: -24.24 SS G_CDS: 0.61 Total: -23.63 kcal Atomic # 8 Polarization: -25.25 SS G_CDS: -0.64 Total: -25.89 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.29 -7.86 -39.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001518001432.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.064 kcal (2) G-P(sol) polarization free energy of solvation -31.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds